Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/52e4324aa8a56b7112cbab09c4e0d2/aih-tih-sc-184b05-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/0ee699d96c80aea156fa37bc52c759/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/0ee699d96c80aea156fa37bc52c759/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/8ad8b09b17fea376049af06d728e81/aih-tih-sc-184b05-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-184b05-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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