File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/7f39af8764d85784b2065349cc7ad3/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (aih-tih-sc-24ecfe-R1_A23YTGFLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/1df1663baebbd37ee71760bb555a15/aih-tih-sc-24ecfe-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/7f39af8764d85784b2065349cc7ad3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/06bc43b7a8e03ba958f3ba94bebbb5/aih-tih-sc-24ecfe-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/db0390e137cf3062481f869034d2c8/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/7f39af8764d85784b2065349cc7ad3/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 20703331
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-24ecfe-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	20703331
Known Splicing Events:	20335384
Partial Novel Splicing Events:	86152
Novel Splicing Events:	267961
Filtered Splicing Events:	13834

Total splicing  Junctions:	153228
Known Splicing Junctions:	138129
Partial Novel Splicing Junctions:	7008
Novel Splicing Junctions:	8091

===================================================================
Create BED file ...
Create Interact file ...