File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/1da99bce9357534999ed802641c0a4/.command.log
Size
15.0 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-28eb14-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e543dae6-5fea-4720-bfb6-150bf1ff20d4/82/1bfcba5045fc10a52ca200a4890a9a/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/1da99bce9357534999ed802641c0a4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/6d0dd482813b988b4bc2174cf5a280/aih-tih-sc-28eb14-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/1da99bce9357534999ed802641c0a4/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/57d0af97b8fe117b206493530fd722/aih-tih-sc-28eb14-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
NUMA1--NSD3
starfusion
arriba
TMX2--MRPL48
starfusion
arriba
FGFR1--RAB11FIP1
starfusion
CTTN--PPP6R3
starfusion
arriba
AC069120.1--LETM2
starfusion
arriba
RNF169--TENM4
starfusion
arriba
PC--GINS4
starfusion
arriba
PIP4K2A--LRMDA
starfusion
arriba
PLPBP--GAB2
starfusion
DNAH14--VPS13B
starfusion
arriba
PI4KA--GGT3P
starfusion
arriba
SCAF8--SHROOM1
starfusion
arriba
FSIP1--AC013652.1
starfusion
arriba
TLK2--AC240565.1
starfusion
VPS13B--DNAH14
starfusion
arriba
AP000867.4--ADGRA2
starfusion
arriba
GRK5--MGMT
starfusion
arriba
POLE--SLC15A4
starfusion
arriba
PPFIA1--CLNS1A
starfusion
arriba
ESR1--GPR37L1
starfusion
OSCP1--CTPS1
starfusion
arriba
CR381653.1--AC007326.5
starfusion
AP000867.4--INTS4
starfusion
LRMDA--PIP4K2A
starfusion
arriba
PCDHA11--PCDHAC1
arriba
PCDHA11--PCDHAC2
arriba
PCDHA11--PCDHA13
arriba
SCAF8--SYNE1
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA10
arriba
CST9--CST9L
arriba
TVP23C--CDRT4
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHA13
arriba
INTS4--RNF5P1
arriba
INTS4--AC016813.1
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHA13
arriba
CTTN--TENM4
arriba
NUMA1--GAB2
arriba
PCDHGA4--PCDHGC5
arriba
PCDHGA4--PCDHGA8
arriba
PCDHGA4--PCDHGC4
arriba
PCDHGA4--PCDHGC3
arriba
PCDHGA4--PCDHGB6
arriba
PCDHGA4--PCDHGB7
arriba
PCDHGA4--PCDHGA11
arriba
PCDHGA4--PCDHGA9
arriba
PCDHGA4--PCDHGA12
arriba
PCDHGA4--PCDHGA10
arriba
STX16--NPEPL1
arriba
SCAF8--RNA5SP192
arriba
LRP5--RN7SKP297
arriba
LRP5--CHRDL2
arriba
TENM4--AP001992.1
arriba
TLK2P1--AC110079.1
arriba
LRRC75B--SEZ6L
arriba
NPEPPS--RNA5SP526
arriba
NPEPPS--TBC1D3
arriba
AC108704.1--SLC15A4
arriba
GLT1D1--SLC15A4
arriba

  0%|          | 0/71 [00:00<?, ?it/s]
Processing NUMA1--NSD3:   0%|          | 0/71 [00:00<?, ?it/s]
Processing NUMA1--NSD3:   1%|▏         | 1/71 [00:00<00:08,  8.69it/s]
Processing TMX2--MRPL48:   1%|▏         | 1/71 [00:00<00:08,  8.69it/s]
Processing TMX2--MRPL48:   3%|▎         | 2/71 [00:00<00:07,  9.07it/s]
Processing FGFR1--RAB11FIP1:   3%|▎         | 2/71 [00:00<00:07,  9.07it/s]
Processing FGFR1--RAB11FIP1:   4%|▍         | 3/71 [00:00<00:07,  9.20it/s]
Processing CTTN--PPP6R3:   4%|▍         | 3/71 [00:00<00:07,  9.20it/s]    
Processing CTTN--PPP6R3:   6%|▌         | 4/71 [00:00<00:07,  9.26it/s]
Processing AC069120.1--LETM2:   6%|▌         | 4/71 [00:00<00:07,  9.26it/s]
Processing AC069120.1--LETM2:   7%|▋         | 5/71 [00:00<00:07,  9.29it/s]
Processing RNF169--TENM4:   7%|▋         | 5/71 [00:00<00:07,  9.29it/s]    
Processing RNF169--TENM4:   8%|▊         | 6/71 [00:00<00:06,  9.31it/s]
Processing PC--GINS4:   8%|▊         | 6/71 [00:00<00:06,  9.31it/s]    
Processing PC--GINS4:  10%|▉         | 7/71 [00:00<00:06,  9.33it/s]
Processing PIP4K2A--LRMDA:  10%|▉         | 7/71 [00:00<00:06,  9.33it/s]
Processing PIP4K2A--LRMDA:  11%|█▏        | 8/71 [00:00<00:06,  9.33it/s]
Processing PLPBP--GAB2:  11%|█▏        | 8/71 [00:00<00:06,  9.33it/s]   
Processing PLPBP--GAB2:  13%|█▎        | 9/71 [00:00<00:06,  9.34it/s]
Processing DNAH14--VPS13B:  13%|█▎        | 9/71 [00:00<00:06,  9.34it/s]
Processing DNAH14--VPS13B:  14%|█▍        | 10/71 [00:01<00:06,  9.28it/s]
Processing PI4KA--GGT3P:  14%|█▍        | 10/71 [00:01<00:06,  9.28it/s]  
Processing PI4KA--GGT3P:  15%|█▌        | 11/71 [00:01<00:06,  9.24it/s]
Processing SCAF8--SHROOM1:  15%|█▌        | 11/71 [00:01<00:06,  9.24it/s]
Processing SCAF8--SHROOM1:  17%|█▋        | 12/71 [00:01<00:06,  9.21it/s]
Processing FSIP1--AC013652.1:  17%|█▋        | 12/71 [00:01<00:06,  9.21it/s]
Processing FSIP1--AC013652.1:  18%|█▊        | 13/71 [00:01<00:06,  9.19it/s]
Processing TLK2--AC240565.1:  18%|█▊        | 13/71 [00:01<00:06,  9.19it/s] 
Processing TLK2--AC240565.1:  20%|█▉        | 14/71 [00:01<00:06,  9.18it/s]
Processing VPS13B--DNAH14:  20%|█▉        | 14/71 [00:01<00:06,  9.18it/s]  
Processing VPS13B--DNAH14:  21%|██        | 15/71 [00:01<00:06,  9.17it/s]
Processing AP000867.4--ADGRA2:  21%|██        | 15/71 [00:01<00:06,  9.17it/s]
Processing AP000867.4--ADGRA2:  23%|██▎       | 16/71 [00:01<00:05,  9.22it/s]
Processing GRK5--MGMT:  23%|██▎       | 16/71 [00:01<00:05,  9.22it/s]        
Processing GRK5--MGMT:  24%|██▍       | 17/71 [00:01<00:05,  9.26it/s]
Processing POLE--SLC15A4:  24%|██▍       | 17/71 [00:01<00:05,  9.26it/s]
Processing POLE--SLC15A4:  25%|██▌       | 18/71 [00:01<00:05,  9.29it/s]
Processing PPFIA1--CLNS1A:  25%|██▌       | 18/71 [00:01<00:05,  9.29it/s]
Processing PPFIA1--CLNS1A:  27%|██▋       | 19/71 [00:02<00:05,  9.31it/s]
Processing ESR1--GPR37L1:  27%|██▋       | 19/71 [00:02<00:05,  9.31it/s] 
Processing ESR1--GPR37L1:  28%|██▊       | 20/71 [00:02<00:05,  9.32it/s]
Processing OSCP1--CTPS1:  28%|██▊       | 20/71 [00:02<00:05,  9.32it/s] 
Processing OSCP1--CTPS1:  30%|██▉       | 21/71 [00:02<00:05,  9.33it/s]
Processing CR381653.1--AC007326.5:  30%|██▉       | 21/71 [00:02<00:05,  9.33it/s]
Processing CR381653.1--AC007326.5:  31%|███       | 22/71 [00:02<00:05,  9.34it/s]
Processing AP000867.4--INTS4:  31%|███       | 22/71 [00:02<00:05,  9.34it/s]     
Processing AP000867.4--INTS4:  32%|███▏      | 23/71 [00:02<00:05,  9.35it/s]
Processing LRMDA--PIP4K2A:  32%|███▏      | 23/71 [00:02<00:05,  9.35it/s]   
Processing LRMDA--PIP4K2A:  34%|███▍      | 24/71 [00:02<00:05,  9.35it/s]
Processing PCDHA11--PCDHAC1:  34%|███▍      | 24/71 [00:02<00:05,  9.35it/s]
Processing PCDHA11--PCDHAC1:  35%|███▌      | 25/71 [00:02<00:04,  9.36it/s]
Processing PCDHA11--PCDHAC2:  35%|███▌      | 25/71 [00:02<00:04,  9.36it/s]
Processing PCDHA11--PCDHAC2:  37%|███▋      | 26/71 [00:02<00:04,  9.36it/s]
Processing PCDHA11--PCDHA13:  37%|███▋      | 26/71 [00:02<00:04,  9.36it/s]
Processing PCDHA11--PCDHA13:  38%|███▊      | 27/71 [00:02<00:04,  9.36it/s]
Processing SCAF8--SYNE1:  38%|███▊      | 27/71 [00:02<00:04,  9.36it/s]    
Processing SCAF8--SYNE1:  39%|███▉      | 28/71 [00:03<00:04,  9.36it/s]
Processing PCDHGB2--PCDHGC5:  39%|███▉      | 28/71 [00:03<00:04,  9.36it/s]
Processing PCDHGB2--PCDHGC5:  41%|████      | 29/71 [00:03<00:04,  9.36it/s]
Processing PCDHGB2--PCDHGA8:  41%|████      | 29/71 [00:03<00:04,  9.36it/s]
Processing PCDHGB2--PCDHGA8:  42%|████▏     | 30/71 [00:03<00:04,  9.36it/s]
Processing PCDHGB2--PCDHGC4:  42%|████▏     | 30/71 [00:03<00:04,  9.36it/s]
Processing PCDHGB2--PCDHGC4:  44%|████▎     | 31/71 [00:03<00:04,  9.36it/s]
Processing PCDHGB2--PCDHGC3:  44%|████▎     | 31/71 [00:03<00:04,  9.36it/s]
Processing PCDHGB2--PCDHGC3:  45%|████▌     | 32/71 [00:03<00:04,  9.36it/s]
Processing PCDHGB2--PCDHGB6:  45%|████▌     | 32/71 [00:03<00:04,  9.36it/s]
Processing PCDHGB2--PCDHGB6:  46%|████▋     | 33/71 [00:03<00:04,  9.36it/s]
Processing PCDHGB2--PCDHGB7:  46%|████▋     | 33/71 [00:03<00:04,  9.36it/s]
Processing PCDHGB2--PCDHGB7:  48%|████▊     | 34/71 [00:03<00:03,  9.36it/s]
Processing PCDHGB2--PCDHGA11:  48%|████▊     | 34/71 [00:03<00:03,  9.36it/s]
Processing PCDHGB2--PCDHGA11:  49%|████▉     | 35/71 [00:03<00:03,  9.36it/s]
Processing PCDHGB2--PCDHGA9:  49%|████▉     | 35/71 [00:03<00:03,  9.36it/s] 
Processing PCDHGB2--PCDHGA9:  51%|█████     | 36/71 [00:03<00:03,  9.36it/s]
Processing PCDHGB2--PCDHGA12:  51%|█████     | 36/71 [00:03<00:03,  9.36it/s]
Processing PCDHGB2--PCDHGA12:  52%|█████▏    | 37/71 [00:03<00:03,  9.36it/s]
Processing PCDHGB2--PCDHGA10:  52%|█████▏    | 37/71 [00:03<00:03,  9.36it/s]
Processing PCDHGB2--PCDHGA10:  54%|█████▎    | 38/71 [00:04<00:03,  9.36it/s]
Processing CST9--CST9L:  54%|█████▎    | 38/71 [00:04<00:03,  9.36it/s]      
Processing CST9--CST9L:  55%|█████▍    | 39/71 [00:04<00:03,  9.36it/s]
Processing TVP23C--CDRT4:  55%|█████▍    | 39/71 [00:04<00:03,  9.36it/s]
Processing TVP23C--CDRT4:  56%|█████▋    | 40/71 [00:04<00:03,  9.36it/s]
Processing PCDHA4--PCDHAC2:  56%|█████▋    | 40/71 [00:04<00:03,  9.36it/s]
Processing PCDHA4--PCDHAC2:  58%|█████▊    | 41/71 [00:04<00:03,  9.36it/s]
Processing PCDHA4--PCDHAC1:  58%|█████▊    | 41/71 [00:04<00:03,  9.36it/s]
Processing PCDHA4--PCDHAC1:  59%|█████▉    | 42/71 [00:04<00:03,  9.36it/s]
Processing PCDHA4--PCDHA13:  59%|█████▉    | 42/71 [00:04<00:03,  9.36it/s]
Processing PCDHA4--PCDHA13:  61%|██████    | 43/71 [00:04<00:02,  9.36it/s]
Processing INTS4--RNF5P1:  61%|██████    | 43/71 [00:04<00:02,  9.36it/s]  
Processing INTS4--RNF5P1:  62%|██████▏   | 44/71 [00:04<00:02,  9.36it/s]
Processing INTS4--AC016813.1:  62%|██████▏   | 44/71 [00:04<00:02,  9.36it/s]
Processing INTS4--AC016813.1:  63%|██████▎   | 45/71 [00:04<00:02,  9.36it/s]
Processing PCDHA10--PCDHAC2:  63%|██████▎   | 45/71 [00:04<00:02,  9.36it/s] 
Processing PCDHA10--PCDHAC2:  65%|██████▍   | 46/71 [00:04<00:02,  9.36it/s]
Processing PCDHA10--PCDHAC1:  65%|██████▍   | 46/71 [00:04<00:02,  9.36it/s]
Processing PCDHA10--PCDHAC1:  66%|██████▌   | 47/71 [00:05<00:02,  9.36it/s]
Processing PCDHA10--PCDHA13:  66%|██████▌   | 47/71 [00:05<00:02,  9.36it/s]
Processing PCDHA10--PCDHA13:  68%|██████▊   | 48/71 [00:05<00:02,  9.36it/s]
Processing CTTN--TENM4:  68%|██████▊   | 48/71 [00:05<00:02,  9.36it/s]     
Processing CTTN--TENM4:  69%|██████▉   | 49/71 [00:05<00:02,  9.36it/s]
Processing NUMA1--GAB2:  69%|██████▉   | 49/71 [00:05<00:02,  9.36it/s]
Processing NUMA1--GAB2:  70%|███████   | 50/71 [00:05<00:02,  9.36it/s]
Processing PCDHGA4--PCDHGC5:  70%|███████   | 50/71 [00:05<00:02,  9.36it/s]
Processing PCDHGA4--PCDHGC5:  72%|███████▏  | 51/71 [00:05<00:02,  9.29it/s]
Processing PCDHGA4--PCDHGA8:  72%|███████▏  | 51/71 [00:05<00:02,  9.29it/s]
Processing PCDHGA4--PCDHGA8:  73%|███████▎  | 52/71 [00:05<00:02,  9.24it/s]
Processing PCDHGA4--PCDHGC4:  73%|███████▎  | 52/71 [00:05<00:02,  9.24it/s]
Processing PCDHGA4--PCDHGC4:  75%|███████▍  | 53/71 [00:05<00:01,  9.21it/s]
Processing PCDHGA4--PCDHGC3:  75%|███████▍  | 53/71 [00:05<00:01,  9.21it/s]
Processing PCDHGA4--PCDHGC3:  76%|███████▌  | 54/71 [00:05<00:01,  9.18it/s]
Processing PCDHGA4--PCDHGB6:  76%|███████▌  | 54/71 [00:05<00:01,  9.18it/s]
Processing PCDHGA4--PCDHGB6:  77%|███████▋  | 55/71 [00:05<00:01,  9.17it/s]
Processing PCDHGA4--PCDHGB7:  77%|███████▋  | 55/71 [00:05<00:01,  9.17it/s]
Processing PCDHGA4--PCDHGB7:  79%|███████▉  | 56/71 [00:06<00:01,  9.16it/s]
Processing PCDHGA4--PCDHGA11:  79%|███████▉  | 56/71 [00:06<00:01,  9.16it/s]
Processing PCDHGA4--PCDHGA11:  80%|████████  | 57/71 [00:06<00:01,  9.15it/s]
Processing PCDHGA4--PCDHGA9:  80%|████████  | 57/71 [00:06<00:01,  9.15it/s] 
Processing PCDHGA4--PCDHGA9:  82%|████████▏ | 58/71 [00:06<00:01,  9.14it/s]
Processing PCDHGA4--PCDHGA12:  82%|████████▏ | 58/71 [00:06<00:01,  9.14it/s]
Processing PCDHGA4--PCDHGA12:  83%|████████▎ | 59/71 [00:06<00:01,  9.20it/s]
Processing PCDHGA4--PCDHGA10:  83%|████████▎ | 59/71 [00:06<00:01,  9.20it/s]
Processing PCDHGA4--PCDHGA10:  85%|████████▍ | 60/71 [00:06<00:01,  9.25it/s]
Processing STX16--NPEPL1:  85%|████████▍ | 60/71 [00:06<00:01,  9.25it/s]    
Processing STX16--NPEPL1:  86%|████████▌ | 61/71 [00:06<00:01,  9.28it/s]
Processing SCAF8--RNA5SP192:  86%|████████▌ | 61/71 [00:06<00:01,  9.28it/s]
Processing SCAF8--RNA5SP192:  87%|████████▋ | 62/71 [00:06<00:00,  9.31it/s]
Processing LRP5--RN7SKP297:  87%|████████▋ | 62/71 [00:06<00:00,  9.31it/s] 
Processing LRP5--RN7SKP297:  89%|████████▊ | 63/71 [00:06<00:00,  9.32it/s]
Processing LRP5--CHRDL2:  89%|████████▊ | 63/71 [00:06<00:00,  9.32it/s]   
Processing LRP5--CHRDL2:  90%|█████████ | 64/71 [00:06<00:00,  9.33it/s]
Processing TENM4--AP001992.1:  90%|█████████ | 64/71 [00:06<00:00,  9.33it/s]
Processing TENM4--AP001992.1:  92%|█████████▏| 65/71 [00:06<00:00,  9.34it/s]
Processing TLK2P1--AC110079.1:  92%|█████████▏| 65/71 [00:06<00:00,  9.34it/s]
Processing TLK2P1--AC110079.1:  93%|█████████▎| 66/71 [00:07<00:00,  9.35it/s]
Processing LRRC75B--SEZ6L:  93%|█████████▎| 66/71 [00:07<00:00,  9.35it/s]    
Processing LRRC75B--SEZ6L:  94%|█████████▍| 67/71 [00:07<00:00,  9.35it/s]
Processing NPEPPS--RNA5SP526:  94%|█████████▍| 67/71 [00:07<00:00,  9.35it/s]
Processing NPEPPS--RNA5SP526:  96%|█████████▌| 68/71 [00:07<00:00,  9.36it/s]
Processing NPEPPS--TBC1D3:  96%|█████████▌| 68/71 [00:07<00:00,  9.36it/s]   
Processing NPEPPS--TBC1D3:  97%|█████████▋| 69/71 [00:07<00:00,  9.36it/s]
Processing AC108704.1--SLC15A4:  97%|█████████▋| 69/71 [00:07<00:00,  9.36it/s]
Processing AC108704.1--SLC15A4:  99%|█████████▊| 70/71 [00:07<00:00,  9.36it/s]
Processing GLT1D1--SLC15A4:  99%|█████████▊| 70/71 [00:07<00:00,  9.36it/s]    
Processing GLT1D1--SLC15A4: 100%|██████████| 71/71 [00:07<00:00,  9.36it/s]
Processing GLT1D1--SLC15A4: 100%|██████████| 71/71 [00:07<00:00,  9.30it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory