Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/184faea4f130c0eae580ccd3e890be/aih-tih-sc-31d31f-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/cd4a0f856da9ad650e758f6f7c101c/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/cd4a0f856da9ad650e758f6f7c101c/.command.run
==> STAGING COMPLETE (3 inputs)
/usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory
INFO 2026-06-03 19:42:22 RExecutor Executing R script via command: Rscript /tmp/script11343069842279917156.R
ERROR 2026-06-03 19:42:22 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 19:42:22 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 19:42:22 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 19:42:22 ProcessExecutor During startup - Warning messages:
ERROR 2026-06-03 19:42:22 ProcessExecutor 1: Setting LC_CTYPE failed, using "C"
ERROR 2026-06-03 19:42:22 ProcessExecutor 2: Setting LC_COLLATE failed, using "C"
ERROR 2026-06-03 19:42:22 ProcessExecutor 3: Setting LC_TIME failed, using "C"
ERROR 2026-06-03 19:42:22 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C"
ERROR 2026-06-03 19:42:22 ProcessExecutor 5: Setting LC_MONETARY failed, using "C"
ERROR 2026-06-03 19:42:22 ProcessExecutor 6: Setting LC_PAPER failed, using "C"
ERROR 2026-06-03 19:42:22 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C"
INFO 2026-06-03 19:42:22 ProcessExecutor [1] "Checking if R is installed"
ERROR 2026-06-03 19:42:22 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
Jun 03, 2026 7:42:22 PM com.intel.gkl.NativeLibraryLoader load
INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so
[Wed Jun 03 19:42:22 GMT 2026] CollectInsertSizeMetrics --Histogram_FILE aih-tih-sc-31d31f-R1_A23YTGFLT4_1_collectinsertsize.pdf --INPUT aih-tih-sc-31d31f-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-31d31f-R1_A23YTGFLT4_1_collectinsertsize.txt --DEVIATIONS 10.0 --MINIMUM_PCT 0.05 --METRIC_ACCUMULATION_LEVEL ALL_READS --INCLUDE_DUPLICATES false --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Wed Jun 03 19:42:22 GMT 2026] Executing as ?@nf-84cd4a0f856da9ad650e758f6f7c101c-76b12-b9nn8 on Linux 6.12.83 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0
INFO 2026-06-03 19:42:24 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:01s. Time for last 1,000,000: 1s. Last read position: chr1:1,472,007
INFO 2026-06-03 19:42:25 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 1s. Last read position: chr1:6,253,768
INFO 2026-06-03 19:42:26 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 1s. Last read position: chr1:9,744,613
INFO 2026-06-03 19:42:27 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 1s. Last read position: chr1:13,782,367
INFO 2026-06-03 19:42:28 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 0s. Last read position: chr1:17,069,133
INFO 2026-06-03 19:42:29 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 1s. Last read position: chr1:20,941,734
INFO 2026-06-03 19:42:31 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 1s. Last read position: chr1:22,639,312
INFO 2026-06-03 19:42:32 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 1s. Last read position: chr1:25,829,606
INFO 2026-06-03 19:42:33 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:27,552,007
INFO 2026-06-03 19:42:34 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:32,226,415
INFO 2026-06-03 19:42:35 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 1s. Last read position: chr1:35,192,643
INFO 2026-06-03 19:42:36 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 1s. Last read position: chr1:39,387,236
INFO 2026-06-03 19:42:37 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 1s. Last read position: chr1:43,312,370
INFO 2026-06-03 19:42:38 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 1s. Last read position: chr1:45,676,842
INFO 2026-06-03 19:42:39 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 1s. Last read position: chr1:52,950,776
INFO 2026-06-03 19:42:41 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 1s. Last read position: chr1:67,269,552
INFO 2026-06-03 19:42:42 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 0s. Last read position: chr1:93,582,725
INFO 2026-06-03 19:42:43 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:110,341,327
INFO 2026-06-03 19:42:44 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:115,976,658
INFO 2026-06-03 19:42:45 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 0s. Last read position: chr1:143,904,241
INFO 2026-06-03 19:42:46 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 0s. Last read position: chr1:148,564,860
INFO 2026-06-03 19:42:47 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 0s. Last read position: chr1:150,338,236
INFO 2026-06-03 19:42:48 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 1s. Last read position: chr1:151,520,226
INFO 2026-06-03 19:42:48 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 0s. Last read position: chr1:154,170,419
INFO 2026-06-03 19:42:49 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 0s. Last read position: chr1:155,181,854
INFO 2026-06-03 19:42:50 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 0s. Last read position: chr1:156,042,285
INFO 2026-06-03 19:42:51 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 0s. Last read position: chr1:156,969,302
INFO 2026-06-03 19:42:52 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:167,054,274
INFO 2026-06-03 19:42:53 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:178,024,040
INFO 2026-06-03 19:42:55 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:186,339,745
INFO 2026-06-03 19:42:56 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:202,422,672
INFO 2026-06-03 19:42:57 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:206,685,211
INFO 2026-06-03 19:42:58 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 0s. Last read position: chr1:207,336,807
INFO 2026-06-03 19:42:59 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:223,619,357
INFO 2026-06-03 19:43:00 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:228,271,963
INFO 2026-06-03 19:43:01 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 0s. Last read position: chr1:236,064,882
INFO 2026-06-03 19:43:02 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 0s. Last read position: chr2:3,388,596
INFO 2026-06-03 19:43:03 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 0s. Last read position: chr2:20,278,599
INFO 2026-06-03 19:43:04 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 0s. Last read position: chr2:27,234,628
INFO 2026-06-03 19:43:05 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,254
INFO 2026-06-03 19:43:06 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,273
INFO 2026-06-03 19:43:07 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,444
INFO 2026-06-03 19:43:08 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr2:43,225,006
INFO 2026-06-03 19:43:09 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr2:54,626,099
INFO 2026-06-03 19:43:10 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 0s. Last read position: chr2:61,348,354
INFO 2026-06-03 19:43:11 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr2:71,388,662
INFO 2026-06-03 19:43:12 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr2:74,878,916
INFO 2026-06-03 19:43:13 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr2:88,126,308
INFO 2026-06-03 19:43:14 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr2:97,792,436
INFO 2026-06-03 19:43:15 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr2:108,754,937
INFO 2026-06-03 19:43:16 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 0s. Last read position: chr2:111,873,329
INFO 2026-06-03 19:43:17 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 0s. Last read position: chr2:127,605,899
INFO 2026-06-03 19:43:18 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr2:148,483,657
INFO 2026-06-03 19:43:20 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr2:170,965,794
INFO 2026-06-03 19:43:21 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr2:181,531,742
INFO 2026-06-03 19:43:22 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr2:190,998,271
INFO 2026-06-03 19:43:23 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 0s. Last read position: chr2:203,112,042
INFO 2026-06-03 19:43:23 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 0s. Last read position: chr2:215,379,269
INFO 2026-06-03 19:43:24 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 0s. Last read position: chr2:218,392,980
INFO 2026-06-03 19:43:25 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 0s. Last read position: chr2:224,862,694
INFO 2026-06-03 19:43:26 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr2:231,521,013
INFO 2026-06-03 19:43:27 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr2:237,377,165
INFO 2026-06-03 19:43:29 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr2:241,240,065
INFO 2026-06-03 19:43:30 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 0s. Last read position: chr3:9,933,056
INFO 2026-06-03 19:43:30 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 0s. Last read position: chr3:18,349,426
INFO 2026-06-03 19:43:31 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 0s. Last read position: chr3:38,020,230
INFO 2026-06-03 19:43:32 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr3:45,118,457
INFO 2026-06-03 19:43:34 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr3:47,916,804
INFO 2026-06-03 19:43:35 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 0s. Last read position: chr3:49,006,123
INFO 2026-06-03 19:43:36 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr3:49,972,125
INFO 2026-06-03 19:43:36 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 0s. Last read position: chr3:52,502,009
INFO 2026-06-03 19:43:37 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 0s. Last read position: chr3:58,524,588
INFO 2026-06-03 19:43:38 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 0s. Last read position: chr3:100,386,886
INFO 2026-06-03 19:43:39 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 0s. Last read position: chr3:121,694,567
INFO 2026-06-03 19:43:40 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr3:127,014,711
INFO 2026-06-03 19:43:41 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr3:134,486,543
INFO 2026-06-03 19:43:42 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 0s. Last read position: chr3:158,665,346
INFO 2026-06-03 19:43:43 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr3:184,142,321
INFO 2026-06-03 19:43:44 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 0s. Last read position: chr3:188,524,726
INFO 2026-06-03 19:43:45 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr3:195,725,206
INFO 2026-06-03 19:43:47 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr3:195,779,581
INFO 2026-06-03 19:43:48 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr3:195,783,512
INFO 2026-06-03 19:43:49 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr3:195,787,869
INFO 2026-06-03 19:43:50 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr3:197,951,157
INFO 2026-06-03 19:43:51 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr4:1,804,946
INFO 2026-06-03 19:43:52 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr4:6,863,295
INFO 2026-06-03 19:43:53 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 0s. Last read position: chr4:25,662,552
INFO 2026-06-03 19:43:54 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr4:54,064,190
INFO 2026-06-03 19:43:55 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr4:73,156,044
INFO 2026-06-03 19:43:57 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr4:83,094,744
INFO 2026-06-03 19:43:58 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr4:106,328,115
INFO 2026-06-03 19:43:59 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 0s. Last read position: chr4:139,147,812
INFO 2026-06-03 19:44:00 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr4:153,168,487
INFO 2026-06-03 19:44:01 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr4:186,611,388
INFO 2026-06-03 19:44:02 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr5:10,258,278
INFO 2026-06-03 19:44:03 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 0s. Last read position: chr5:16,475,044
INFO 2026-06-03 19:44:04 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr5:42,801,093
INFO 2026-06-03 19:44:05 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr5:69,365,259
INFO 2026-06-03 19:44:06 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr5:82,269,947
INFO 2026-06-03 19:44:07 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr5:113,018,370
INFO 2026-06-03 19:44:08 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr5:132,822,999
INFO 2026-06-03 19:44:09 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr5:138,466,995
INFO 2026-06-03 19:44:10 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 0s. Last read position: chr5:141,102,404
INFO 2026-06-03 19:44:11 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr5:146,459,124
INFO 2026-06-03 19:44:12 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,568
INFO 2026-06-03 19:44:14 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr5:154,792,679
INFO 2026-06-03 19:44:15 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr5:171,392,962
INFO 2026-06-03 19:44:16 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr5:177,366,195
INFO 2026-06-03 19:44:17 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr5:179,797,997
INFO 2026-06-03 19:44:18 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr5:181,260,264
INFO 2026-06-03 19:44:19 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr6:7,247,193
INFO 2026-06-03 19:44:20 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr6:21,594,598
INFO 2026-06-03 19:44:21 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr6:29,610,960
INFO 2026-06-03 19:44:22 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr6:30,720,432
INFO 2026-06-03 19:44:23 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr6:31,631,828
INFO 2026-06-03 19:44:24 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr6:31,956,979
INFO 2026-06-03 19:44:25 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 0s. Last read position: chr6:33,290,755
INFO 2026-06-03 19:44:27 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr6:35,470,578
INFO 2026-06-03 19:44:28 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr6:43,019,125
INFO 2026-06-03 19:44:29 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr6:47,286,210
INFO 2026-06-03 19:44:30 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr6:63,685,295
INFO 2026-06-03 19:44:31 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr6:89,352,548
INFO 2026-06-03 19:44:32 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr6:110,967,613
INFO 2026-06-03 19:44:34 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr6:130,869,797
INFO 2026-06-03 19:44:35 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 0s. Last read position: chr6:138,945,360
INFO 2026-06-03 19:44:35 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 0s. Last read position: chr6:154,832,966
INFO 2026-06-03 19:44:37 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr6:160,069,907
INFO 2026-06-03 19:44:38 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr7:1,435,148
INFO 2026-06-03 19:44:39 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr7:5,362,689
INFO 2026-06-03 19:44:40 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr7:5,923,945
INFO 2026-06-03 19:44:41 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr7:27,145,607
INFO 2026-06-03 19:44:42 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr7:44,104,844
INFO 2026-06-03 19:44:43 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr7:55,687,835
INFO 2026-06-03 19:44:44 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr7:73,296,877
INFO 2026-06-03 19:44:45 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 0s. Last read position: chr7:75,395,285
INFO 2026-06-03 19:44:46 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr7:77,053,106
INFO 2026-06-03 19:44:47 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr7:93,926,138
INFO 2026-06-03 19:44:49 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr7:99,666,994
INFO 2026-06-03 19:44:49 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 0s. Last read position: chr7:100,805,561
INFO 2026-06-03 19:44:51 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr7:100,991,457
INFO 2026-06-03 19:44:52 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr7:100,992,360
INFO 2026-06-03 19:44:53 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr7:100,992,858
INFO 2026-06-03 19:44:54 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,161
INFO 2026-06-03 19:44:55 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,592
INFO 2026-06-03 19:44:56 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,772
INFO 2026-06-03 19:44:57 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 0s. Last read position: chr7:100,994,136
INFO 2026-06-03 19:44:58 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 0s. Last read position: chr7:100,994,655
INFO 2026-06-03 19:44:59 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 0s. Last read position: chr7:100,994,929
INFO 2026-06-03 19:45:00 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr7:100,995,220
INFO 2026-06-03 19:45:01 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr7:100,995,664
INFO 2026-06-03 19:45:02 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,041
INFO 2026-06-03 19:45:03 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,280
INFO 2026-06-03 19:45:04 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,400
INFO 2026-06-03 19:45:05 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,518
INFO 2026-06-03 19:45:06 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 0s. Last read position: chr7:100,996,743
INFO 2026-06-03 19:45:07 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 0s. Last read position: chr7:100,996,843
INFO 2026-06-03 19:45:08 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 0s. Last read position: chr7:100,997,030
INFO 2026-06-03 19:45:09 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 0s. Last read position: chr7:100,997,234
INFO 2026-06-03 19:45:10 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,504
INFO 2026-06-03 19:45:11 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 0s. Last read position: chr7:100,997,809
INFO 2026-06-03 19:45:12 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 0s. Last read position: chr7:100,997,928
INFO 2026-06-03 19:45:12 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 0s. Last read position: chr7:100,998,064
INFO 2026-06-03 19:45:13 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 0s. Last read position: chr7:100,998,266
INFO 2026-06-03 19:45:14 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 0s. Last read position: chr7:100,998,458
INFO 2026-06-03 19:45:15 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 0s. Last read position: chr7:100,998,646
INFO 2026-06-03 19:45:16 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 0s. Last read position: chr7:100,998,822
INFO 2026-06-03 19:45:17 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 0s. Last read position: chr7:100,999,010
INFO 2026-06-03 19:45:18 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 0s. Last read position: chr7:100,999,440
INFO 2026-06-03 19:45:19 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,694
INFO 2026-06-03 19:45:20 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,961
INFO 2026-06-03 19:45:21 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,168
INFO 2026-06-03 19:45:22 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,415
INFO 2026-06-03 19:45:23 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,662
INFO 2026-06-03 19:45:24 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,871
INFO 2026-06-03 19:45:25 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,048
INFO 2026-06-03 19:45:26 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,316
INFO 2026-06-03 19:45:28 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,436
INFO 2026-06-03 19:45:29 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,556
INFO 2026-06-03 19:45:30 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,778
INFO 2026-06-03 19:45:31 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,055
INFO 2026-06-03 19:45:32 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,345
INFO 2026-06-03 19:45:33 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,577
INFO 2026-06-03 19:45:34 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr7:101,003,173
INFO 2026-06-03 19:45:35 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 0s. Last read position: chr7:101,003,741
INFO 2026-06-03 19:45:36 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 0s. Last read position: chr7:101,004,046
INFO 2026-06-03 19:45:36 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 0s. Last read position: chr7:101,008,737
INFO 2026-06-03 19:45:37 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr7:102,640,231
INFO 2026-06-03 19:45:39 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr7:108,565,848
INFO 2026-06-03 19:45:40 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr7:128,846,758
INFO 2026-06-03 19:45:41 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr7:139,572,962
INFO 2026-06-03 19:45:42 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 0s. Last read position: chr7:144,282,267
INFO 2026-06-03 19:45:43 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 0s. Last read position: chr7:150,369,765
INFO 2026-06-03 19:45:43 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 0s. Last read position: chr7:152,263,063
INFO 2026-06-03 19:45:45 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr8:9,556,443
INFO 2026-06-03 19:45:46 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr8:22,572,400
INFO 2026-06-03 19:45:47 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr8:29,092,775
INFO 2026-06-03 19:45:48 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr8:38,110,401
INFO 2026-06-03 19:45:49 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr8:47,599,159
INFO 2026-06-03 19:45:50 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr8:70,131,891
INFO 2026-06-03 19:45:51 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr8:94,865,457
INFO 2026-06-03 19:45:52 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr8:116,645,086
INFO 2026-06-03 19:45:54 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr8:133,259,205
INFO 2026-06-03 19:45:55 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr8:143,728,498
INFO 2026-06-03 19:45:56 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,877
INFO 2026-06-03 19:45:57 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 0s. Last read position: chr8:143,862,053
INFO 2026-06-03 19:45:57 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 0s. Last read position: chr8:143,864,400
INFO 2026-06-03 19:45:58 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 0s. Last read position: chr8:143,867,772
INFO 2026-06-03 19:45:59 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr8:143,924,547
INFO 2026-06-03 19:46:00 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr8:144,318,304
INFO 2026-06-03 19:46:01 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 0s. Last read position: chr9:730,170
INFO 2026-06-03 19:46:02 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 0s. Last read position: chr9:20,622,288
INFO 2026-06-03 19:46:03 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 0s. Last read position: chr9:35,377,664
INFO 2026-06-03 19:46:04 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 0s. Last read position: chr9:64,842,206
INFO 2026-06-03 19:46:05 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr9:83,971,293
INFO 2026-06-03 19:46:06 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 0s. Last read position: chr9:93,292,788
INFO 2026-06-03 19:46:07 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 0s. Last read position: chr9:101,390,837
INFO 2026-06-03 19:46:07 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 0s. Last read position: chr9:113,193,441
INFO 2026-06-03 19:46:08 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 0s. Last read position: chr9:121,759,980
INFO 2026-06-03 19:46:09 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 0s. Last read position: chr9:127,867,963
INFO 2026-06-03 19:46:10 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr9:128,633,220
INFO 2026-06-03 19:46:11 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr9:131,066,995
INFO 2026-06-03 19:46:13 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr9:133,797,800
INFO 2026-06-03 19:46:14 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr9:136,476,871
INFO 2026-06-03 19:46:15 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 0s. Last read position: chr9:137,015,752
INFO 2026-06-03 19:46:15 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 0s. Last read position: chr9:137,551,929
INFO 2026-06-03 19:46:16 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 0s. Last read position: chr10:12,374,611
INFO 2026-06-03 19:46:17 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr10:28,595,853
INFO 2026-06-03 19:46:18 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr10:43,387,054
INFO 2026-06-03 19:46:19 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 0s. Last read position: chr10:50,068,162
INFO 2026-06-03 19:46:20 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr10:70,153,850
INFO 2026-06-03 19:46:21 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 0s. Last read position: chr10:75,211,140
INFO 2026-06-03 19:46:22 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr10:86,943,397
INFO 2026-06-03 19:46:23 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr10:95,271,716
INFO 2026-06-03 19:46:24 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr10:100,984,737
INFO 2026-06-03 19:46:25 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 0s. Last read position: chr10:103,661,018
INFO 2026-06-03 19:46:26 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr10:116,944,965
INFO 2026-06-03 19:46:27 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 0s. Last read position: chr10:124,992,785
INFO 2026-06-03 19:46:28 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 0s. Last read position: chr11:314,943
INFO 2026-06-03 19:46:29 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 0s. Last read position: chr11:618,845
INFO 2026-06-03 19:46:30 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr11:1,075,773
INFO 2026-06-03 19:46:31 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr11:1,085,826
INFO 2026-06-03 19:46:32 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr11:1,098,949
INFO 2026-06-03 19:46:33 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr11:1,243,068
INFO 2026-06-03 19:46:34 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr11:1,244,379
INFO 2026-06-03 19:46:35 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 0s. Last read position: chr11:1,245,252
INFO 2026-06-03 19:46:36 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 0s. Last read position: chr11:1,247,003
INFO 2026-06-03 19:46:37 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 0s. Last read position: chr11:1,248,264
INFO 2026-06-03 19:46:37 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 0s. Last read position: chr11:1,249,463
INFO 2026-06-03 19:46:38 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 0s. Last read position: chr11:1,250,918
INFO 2026-06-03 19:46:39 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 0s. Last read position: chr11:2,929,108
INFO 2026-06-03 19:46:40 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 0s. Last read position: chr11:8,707,102
INFO 2026-06-03 19:46:41 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 0s. Last read position: chr11:17,074,415
INFO 2026-06-03 19:46:42 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 0s. Last read position: chr11:43,443,366
INFO 2026-06-03 19:46:43 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr11:46,899,882
INFO 2026-06-03 19:46:44 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 0s. Last read position: chr11:57,796,833
INFO 2026-06-03 19:46:45 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 0s. Last read position: chr11:61,967,320
INFO 2026-06-03 19:46:46 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr11:62,593,916
INFO 2026-06-03 19:46:47 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr11:64,258,941
INFO 2026-06-03 19:46:48 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr11:65,120,759
INFO 2026-06-03 19:46:49 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr11:65,654,413
INFO 2026-06-03 19:46:50 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 0s. Last read position: chr11:66,643,564
INFO 2026-06-03 19:46:51 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 0s. Last read position: chr11:68,045,008
INFO 2026-06-03 19:46:52 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 0s. Last read position: chr11:70,820,647
INFO 2026-06-03 19:46:53 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr11:73,311,058
INFO 2026-06-03 19:46:54 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 0s. Last read position: chr11:83,157,510
INFO 2026-06-03 19:46:55 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr11:102,205,911
INFO 2026-06-03 19:46:56 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr11:117,207,965
INFO 2026-06-03 19:46:57 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 0s. Last read position: chr11:119,056,092
INFO 2026-06-03 19:46:58 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr11:126,271,525
INFO 2026-06-03 19:46:59 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 0s. Last read position: chr12:754,065
INFO 2026-06-03 19:46:59 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 0s. Last read position: chr12:6,374,705
INFO 2026-06-03 19:47:00 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 0s. Last read position: chr12:6,970,939
INFO 2026-06-03 19:47:01 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr12:12,721,035
INFO 2026-06-03 19:47:02 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr12:31,103,769
INFO 2026-06-03 19:47:04 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr12:48,938,971
INFO 2026-06-03 19:47:05 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr12:49,642,243
INFO 2026-06-03 19:47:06 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr12:52,904,801
INFO 2026-06-03 19:47:07 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr12:54,183,740
INFO 2026-06-03 19:47:08 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr12:56,163,753
INFO 2026-06-03 19:47:09 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr12:57,096,581
INFO 2026-06-03 19:47:10 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr12:57,474,872
INFO 2026-06-03 19:47:11 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr12:68,731,707
INFO 2026-06-03 19:47:12 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr12:93,395,487
INFO 2026-06-03 19:47:13 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 0s. Last read position: chr12:108,526,443
INFO 2026-06-03 19:47:14 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 0s. Last read position: chr12:112,265,956
INFO 2026-06-03 19:47:15 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 0s. Last read position: chr12:120,178,852
INFO 2026-06-03 19:47:16 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 0s. Last read position: chr12:122,133,424
INFO 2026-06-03 19:47:17 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr12:124,336,758
INFO 2026-06-03 19:47:18 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr12:132,066,880
INFO 2026-06-03 19:47:19 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 0s. Last read position: chr13:20,189,225
INFO 2026-06-03 19:47:19 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 0s. Last read position: chr13:33,185,860
INFO 2026-06-03 19:47:21 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr13:49,196,925
INFO 2026-06-03 19:47:22 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr13:77,899,960
INFO 2026-06-03 19:47:23 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 0s. Last read position: chr13:110,183,252
INFO 2026-06-03 19:47:24 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 0s. Last read position: chr13:113,319,605
INFO 2026-06-03 19:47:24 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 0s. Last read position: chr14:22,845,991
INFO 2026-06-03 19:47:25 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 0s. Last read position: chr14:24,210,457
INFO 2026-06-03 19:47:26 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 0s. Last read position: chr14:39,181,105
INFO 2026-06-03 19:47:27 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 0s. Last read position: chr14:55,145,137
INFO 2026-06-03 19:47:28 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr14:64,932,202
INFO 2026-06-03 19:47:29 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr14:73,217,233
INFO 2026-06-03 19:47:30 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 0s. Last read position: chr14:76,082,299
INFO 2026-06-03 19:47:31 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 0s. Last read position: chr14:93,294,758
INFO 2026-06-03 19:47:32 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr14:102,082,158
INFO 2026-06-03 19:47:33 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr14:104,152,266
INFO 2026-06-03 19:47:34 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr14:105,460,774
INFO 2026-06-03 19:47:35 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 0s. Last read position: chr14:105,742,190
INFO 2026-06-03 19:47:36 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 0s. Last read position: chr15:31,372,200
INFO 2026-06-03 19:47:37 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 0s. Last read position: chr15:40,353,257
INFO 2026-06-03 19:47:38 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 0s. Last read position: chr15:41,900,660
INFO 2026-06-03 19:47:39 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr15:44,566,221
INFO 2026-06-03 19:47:40 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr15:56,443,676
INFO 2026-06-03 19:47:41 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr15:63,677,927
INFO 2026-06-03 19:47:42 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr15:70,666,947
INFO 2026-06-03 19:47:44 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr15:74,923,657
INFO 2026-06-03 19:47:45 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 0s. Last read position: chr15:78,965,700
INFO 2026-06-03 19:47:45 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 0s. Last read position: chr15:85,244,836
INFO 2026-06-03 19:47:46 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 0s. Last read position: chr15:90,910,273
INFO 2026-06-03 19:47:47 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 0s. Last read position: chr16:371,920
INFO 2026-06-03 19:47:48 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 0s. Last read position: chr16:1,446,517
INFO 2026-06-03 19:47:49 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 0s. Last read position: chr16:2,108,480
INFO 2026-06-03 19:47:49 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 0s. Last read position: chr16:2,765,021
INFO 2026-06-03 19:47:50 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 0s. Last read position: chr16:3,727,899
INFO 2026-06-03 19:47:51 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 0s. Last read position: chr16:11,060,963
INFO 2026-06-03 19:47:52 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 0s. Last read position: chr16:15,006,572
INFO 2026-06-03 19:47:53 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr16:16,350,409
INFO 2026-06-03 19:47:54 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 0s. Last read position: chr16:18,571,278
INFO 2026-06-03 19:47:55 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 0s. Last read position: chr16:21,404,782
INFO 2026-06-03 19:47:56 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr16:21,836,460
INFO 2026-06-03 19:47:57 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 0s. Last read position: chr16:22,533,777
INFO 2026-06-03 19:47:58 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr16:23,623,006
INFO 2026-06-03 19:47:59 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr16:28,496,422
INFO 2026-06-03 19:48:00 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 0s. Last read position: chr16:29,381,828
INFO 2026-06-03 19:48:00 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 0s. Last read position: chr16:29,499,313
INFO 2026-06-03 19:48:02 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr16:29,991,070
INFO 2026-06-03 19:48:03 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr16:30,245,459
INFO 2026-06-03 19:48:04 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr16:30,756,706
INFO 2026-06-03 19:48:05 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr16:46,691,008
INFO 2026-06-03 19:48:06 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr16:57,059,497
INFO 2026-06-03 19:48:07 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr16:67,195,822
INFO 2026-06-03 19:48:08 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr16:68,829,679
INFO 2026-06-03 19:48:09 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr16:71,649,984
INFO 2026-06-03 19:48:10 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 0s. Last read position: chr16:79,598,898
INFO 2026-06-03 19:48:11 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr16:87,602,535
INFO 2026-06-03 19:48:12 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr16:89,280,867
INFO 2026-06-03 19:48:14 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr17:1,013,113
INFO 2026-06-03 19:48:15 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr17:2,387,057
INFO 2026-06-03 19:48:15 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 0s. Last read position: chr17:4,720,463
INFO 2026-06-03 19:48:17 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr17:7,221,294
INFO 2026-06-03 19:48:18 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr17:7,513,977
INFO 2026-06-03 19:48:19 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 0s. Last read position: chr17:9,022,326
INFO 2026-06-03 19:48:19 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 0s. Last read position: chr17:17,793,184
INFO 2026-06-03 19:48:20 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 0s. Last read position: chr17:21,198,788
INFO 2026-06-03 19:48:21 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 0s. Last read position: chr17:29,166,299
INFO 2026-06-03 19:48:22 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 0s. Last read position: chr17:35,710,262
INFO 2026-06-03 19:48:23 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 0s. Last read position: chr17:38,463,364
INFO 2026-06-03 19:48:23 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 0s. Last read position: chr17:39,716,537
INFO 2026-06-03 19:48:24 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 0s. Last read position: chr17:40,878,145
INFO 2026-06-03 19:48:25 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr17:42,793,638
INFO 2026-06-03 19:48:26 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 0s. Last read position: chr17:45,136,697
INFO 2026-06-03 19:48:27 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 0s. Last read position: chr17:47,676,418
INFO 2026-06-03 19:48:28 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 0s. Last read position: chr17:50,185,419
INFO 2026-06-03 19:48:29 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 0s. Last read position: chr17:50,190,547
INFO 2026-06-03 19:48:30 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 0s. Last read position: chr17:50,196,616
INFO 2026-06-03 19:48:31 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr17:50,863,485
INFO 2026-06-03 19:48:32 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr17:59,663,842
INFO 2026-06-03 19:48:33 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr17:64,499,948
INFO 2026-06-03 19:48:34 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 0s. Last read position: chr17:68,877,558
INFO 2026-06-03 19:48:35 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 0s. Last read position: chr17:75,573,136
INFO 2026-06-03 19:48:36 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 0s. Last read position: chr17:75,847,665
INFO 2026-06-03 19:48:37 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr17:78,120,679
INFO 2026-06-03 19:48:37 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 0s. Last read position: chr17:80,363,258
INFO 2026-06-03 19:48:38 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 0s. Last read position: chr17:81,868,776
INFO 2026-06-03 19:48:39 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 0s. Last read position: chr18:657,745
INFO 2026-06-03 19:48:40 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 0s. Last read position: chr18:23,545,027
INFO 2026-06-03 19:48:41 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 0s. Last read position: chr18:50,040,282
INFO 2026-06-03 19:48:41 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 0s. Last read position: chr18:74,633,427
INFO 2026-06-03 19:48:42 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 0s. Last read position: chr19:901,452
INFO 2026-06-03 19:48:43 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 0s. Last read position: chr19:1,300,368
INFO 2026-06-03 19:48:44 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 0s. Last read position: chr19:2,129,105
INFO 2026-06-03 19:48:45 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 0s. Last read position: chr19:3,708,492
INFO 2026-06-03 19:48:46 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 0s. Last read position: chr19:5,090,613
INFO 2026-06-03 19:48:47 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr19:6,420,422
INFO 2026-06-03 19:48:48 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr19:8,335,509
INFO 2026-06-03 19:48:49 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr19:10,637,680
INFO 2026-06-03 19:48:50 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr19:11,436,065
INFO 2026-06-03 19:48:51 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 0s. Last read position: chr19:13,153,392
INFO 2026-06-03 19:48:52 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 0s. Last read position: chr19:15,110,630
INFO 2026-06-03 19:48:53 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr19:15,424,364
INFO 2026-06-03 19:48:54 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr19:17,511,809
INFO 2026-06-03 19:48:55 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr19:18,541,774
INFO 2026-06-03 19:48:56 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr19:32,598,178
INFO 2026-06-03 19:48:57 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr19:35,721,048
INFO 2026-06-03 19:48:58 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr19:38,641,570
INFO 2026-06-03 19:48:59 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr19:39,408,584
INFO 2026-06-03 19:49:01 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr19:39,875,887
INFO 2026-06-03 19:49:02 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr19:39,886,501
INFO 2026-06-03 19:49:03 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr19:39,893,440
INFO 2026-06-03 19:49:04 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 0s. Last read position: chr19:39,913,978
INFO 2026-06-03 19:49:04 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 0s. Last read position: chr19:40,242,663
INFO 2026-06-03 19:49:05 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 0s. Last read position: chr19:41,687,142
INFO 2026-06-03 19:49:06 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 0s. Last read position: chr19:42,090,198
INFO 2026-06-03 19:49:07 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 0s. Last read position: chr19:42,527,350
INFO 2026-06-03 19:49:07 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 0s. Last read position: chr19:45,178,146
INFO 2026-06-03 19:49:08 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 0s. Last read position: chr19:46,720,599
INFO 2026-06-03 19:49:09 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 0s. Last read position: chr19:48,603,610
INFO 2026-06-03 19:49:10 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 0s. Last read position: chr19:49,200,771
INFO 2026-06-03 19:49:10 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 0s. Last read position: chr19:49,801,023
INFO 2026-06-03 19:49:11 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 0s. Last read position: chr19:50,480,639
INFO 2026-06-03 19:49:13 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr19:54,454,545
INFO 2026-06-03 19:49:14 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr19:55,455,883
INFO 2026-06-03 19:49:14 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 0s. Last read position: chr19:58,085,087
INFO 2026-06-03 19:49:15 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr20:3,164,672
INFO 2026-06-03 19:49:17 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr20:17,614,736
INFO 2026-06-03 19:49:18 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr20:23,637,682
INFO 2026-06-03 19:49:19 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr20:34,393,816
INFO 2026-06-03 19:49:20 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr20:36,793,420
INFO 2026-06-03 19:49:21 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr20:44,715,230
INFO 2026-06-03 19:49:22 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr20:49,905,965
INFO 2026-06-03 19:49:23 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr20:58,713,993
INFO 2026-06-03 19:49:24 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr20:62,861,680
INFO 2026-06-03 19:49:25 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr21:5,033,727
INFO 2026-06-03 19:49:26 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,841
INFO 2026-06-03 19:49:27 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,912
INFO 2026-06-03 19:49:28 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 0s. Last read position: chr21:8,258,961
INFO 2026-06-03 19:49:29 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 0s. Last read position: chr21:8,399,124
INFO 2026-06-03 19:49:30 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr21:8,441,913
INFO 2026-06-03 19:49:31 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 0s. Last read position: chr21:8,441,987
INFO 2026-06-03 19:49:32 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,562
INFO 2026-06-03 19:49:33 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr21:33,549,921
INFO 2026-06-03 19:49:34 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 0s. Last read position: chr21:39,661,297
INFO 2026-06-03 19:49:35 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 0s. Last read position: chr21:44,227,465
INFO 2026-06-03 19:49:36 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 0s. Last read position: chr21:46,115,880
INFO 2026-06-03 19:49:36 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 0s. Last read position: chr22:19,064,946
INFO 2026-06-03 19:49:37 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 0s. Last read position: chr22:22,906,510
INFO 2026-06-03 19:49:38 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 0s. Last read position: chr22:25,028,322
INFO 2026-06-03 19:49:39 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr22:29,299,687
INFO 2026-06-03 19:49:40 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr22:31,754,128
INFO 2026-06-03 19:49:41 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr22:36,326,567
INFO 2026-06-03 19:49:42 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 0s. Last read position: chr22:37,944,191
INFO 2026-06-03 19:49:43 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr22:40,265,649
INFO 2026-06-03 19:49:44 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 0s. Last read position: chr22:42,214,871
INFO 2026-06-03 19:49:45 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 0s. Last read position: chr22:50,220,226
INFO 2026-06-03 19:49:46 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 0s. Last read position: chr22:50,720,897
INFO 2026-06-03 19:49:47 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chrX:17,732,241
INFO 2026-06-03 19:49:48 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 0s. Last read position: chrX:43,728,292
INFO 2026-06-03 19:49:48 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 0s. Last read position: chrX:50,085,995
INFO 2026-06-03 19:49:49 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 0s. Last read position: chrX:65,737,317
INFO 2026-06-03 19:49:50 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 0s. Last read position: chrX:77,684,152
INFO 2026-06-03 19:49:51 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 0s. Last read position: chrX:120,163,717
INFO 2026-06-03 19:49:52 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 1s. Last read position: chrX:153,693,309
INFO 2026-06-03 19:49:53 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chrX:154,441,132
INFO 2026-06-03 19:49:54 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 0s. Last read position: GL000220.1:114,135
INFO 2026-06-03 19:49:55 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 0s. Last read position: GL000220.1:114,193
INFO 2026-06-03 19:49:55 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 0s. Last read position: GL000220.1:116,771
INFO 2026-06-03 19:49:56 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 0s. Last read position: GL000220.1:158,134
INFO 2026-06-03 19:49:57 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 0s. Last read position: GL000220.1:159,553
INFO 2026-06-03 19:49:58 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 1s. Last read position: KI270733.1:130,774
INFO 2026-06-03 19:49:59 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 0s. Last read position: KI270733.1:131,040
INFO 2026-06-03 19:50:00 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 0s. Last read position: KI270733.1:133,640
INFO 2026-06-03 19:50:01 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 1s. Last read position: KI270733.1:176,094
INFO 2026-06-03 19:50:02 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 0s. Last read position: KI270733.1:178,243
INFO 2026-06-03 19:50:03 RExecutor Executing R script via command: Rscript /tmp/script5838326874503860122.R /tmp/nxf.XXXX1VVr7a/aih-tih-sc-31d31f-R1_A23YTGFLT4_1_collectinsertsize.txt /tmp/nxf.XXXX1VVr7a/aih-tih-sc-31d31f-R1_A23YTGFLT4_1_collectinsertsize.pdf aih-tih-sc-31d31f-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
ERROR 2026-06-03 19:50:03 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 19:50:03 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 19:50:03 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 19:50:03 ProcessExecutor During startup - Warning messages:
ERROR 2026-06-03 19:50:03 ProcessExecutor 1: Setting LC_CTYPE failed, using "C"
ERROR 2026-06-03 19:50:03 ProcessExecutor 2: Setting LC_COLLATE failed, using "C"
ERROR 2026-06-03 19:50:03 ProcessExecutor 3: Setting LC_TIME failed, using "C"
ERROR 2026-06-03 19:50:03 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C"
ERROR 2026-06-03 19:50:03 ProcessExecutor 5: Setting LC_MONETARY failed, using "C"
ERROR 2026-06-03 19:50:03 ProcessExecutor 6: Setting LC_PAPER failed, using "C"
ERROR 2026-06-03 19:50:03 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C"
INFO 2026-06-03 19:50:03 ProcessExecutor null device
INFO 2026-06-03 19:50:03 ProcessExecutor 1
ERROR 2026-06-03 19:50:03 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
[Wed Jun 03 19:50:03 GMT 2026] picard.analysis.CollectInsertSizeMetrics done. Elapsed time: 7.68 minutes.
Runtime.totalMemory()=387973120