File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/3d7ee2b28f1612993d80273cf66a27/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 03 20:23:28
                             Started mapping on |	Jun 03 20:30:00
                                    Finished on |	Jun 03 21:00:01
       Mapping speed, Million of reads per hour |	309.77

                          Number of input reads |	154970419
                      Average input read length |	257
                                    UNIQUE READS:
                   Uniquely mapped reads number |	147336700
                        Uniquely mapped reads % |	95.07%
                          Average mapped length |	256.31
                       Number of splices: Total |	163403615
            Number of splices: Annotated (sjdb) |	161185450
                       Number of splices: GT/AG |	161612625
                       Number of splices: GC/AG |	1131518
                       Number of splices: AT/AC |	121898
               Number of splices: Non-canonical |	537574
                      Mismatch rate per base, % |	0.18%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.98
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.61
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	6072818
             % of reads mapped to multiple loci |	3.92%
        Number of reads mapped to too many loci |	235189
             % of reads mapped to too many loci |	0.15%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1117923
                 % of reads unmapped: too short |	0.72%
                Number of reads unmapped: other |	207789
                     % of reads unmapped: other |	0.13%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%