/usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory INFO 2026-06-03 20:30:43 RExecutor Executing R script via command: Rscript /tmp/script15089985921749813629.R ERROR 2026-06-03 20:30:43 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:30:43 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:30:43 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:30:43 ProcessExecutor During startup - Warning messages: ERROR 2026-06-03 20:30:43 ProcessExecutor 1: Setting LC_CTYPE failed, using "C" ERROR 2026-06-03 20:30:43 ProcessExecutor 2: Setting LC_COLLATE failed, using "C" ERROR 2026-06-03 20:30:43 ProcessExecutor 3: Setting LC_TIME failed, using "C" ERROR 2026-06-03 20:30:43 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C" ERROR 2026-06-03 20:30:43 ProcessExecutor 5: Setting LC_MONETARY failed, using "C" ERROR 2026-06-03 20:30:43 ProcessExecutor 6: Setting LC_PAPER failed, using "C" ERROR 2026-06-03 20:30:43 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C" INFO 2026-06-03 20:30:43 ProcessExecutor [1] "Checking if R is installed" ERROR 2026-06-03 20:30:43 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) Jun 03, 2026 8:30:43 PM com.intel.gkl.NativeLibraryLoader load INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so [Wed Jun 03 20:30:43 GMT 2026] CollectInsertSizeMetrics --Histogram_FILE aih-tih-sc-150e73-R1_A23YTGFLT4_1_collectinsertsize.pdf --INPUT aih-tih-sc-150e73-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-150e73-R1_A23YTGFLT4_1_collectinsertsize.txt --DEVIATIONS 10.0 --MINIMUM_PCT 0.05 --METRIC_ACCUMULATION_LEVEL ALL_READS --INCLUDE_DUPLICATES false --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Wed Jun 03 20:30:44 GMT 2026] Executing as ?@nf-24a65f9d007865b893afae827aa56df1-7b652-b6njw on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0 INFO 2026-06-03 20:30:45 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:01s. Time for last 1,000,000: 1s. Last read position: chr1:1,049,635 INFO 2026-06-03 20:30:46 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 1s. Last read position: chr1:1,437,334 INFO 2026-06-03 20:30:47 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 1s. Last read position: chr1:2,306,139 INFO 2026-06-03 20:30:48 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 1s. Last read position: chr1:6,469,087 INFO 2026-06-03 20:30:50 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 1s. Last read position: chr1:9,718,841 INFO 2026-06-03 20:30:51 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 1s. Last read position: chr1:11,922,891 INFO 2026-06-03 20:30:52 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 1s. Last read position: chr1:15,728,694 INFO 2026-06-03 20:30:53 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 1s. Last read position: chr1:16,975,690 INFO 2026-06-03 20:30:54 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:19,251,829 INFO 2026-06-03 20:30:55 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:21,598,413 INFO 2026-06-03 20:30:56 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 1s. Last read position: chr1:22,490,371 INFO 2026-06-03 20:30:57 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 1s. Last read position: chr1:22,647,422 INFO 2026-06-03 20:30:58 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 1s. Last read position: chr1:23,863,262 INFO 2026-06-03 20:30:59 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 1s. Last read position: chr1:26,561,650 INFO 2026-06-03 20:31:01 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:27,476,808 INFO 2026-06-03 20:31:02 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 1s. Last read position: chr1:30,741,706 INFO 2026-06-03 20:31:03 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:32,228,520 INFO 2026-06-03 20:31:04 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:32,964,623 INFO 2026-06-03 20:31:05 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:36,156,423 INFO 2026-06-03 20:31:06 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 1s. Last read position: chr1:37,958,244 INFO 2026-06-03 20:31:07 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:40,076,890 INFO 2026-06-03 20:31:08 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 1s. Last read position: chr1:42,943,234 INFO 2026-06-03 20:31:09 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 1s. Last read position: chr1:43,947,611 INFO 2026-06-03 20:31:11 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:45,584,091 INFO 2026-06-03 20:31:12 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:47,778,482 INFO 2026-06-03 20:31:13 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:54,716,598 INFO 2026-06-03 20:31:14 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:64,844,757 INFO 2026-06-03 20:31:15 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:86,903,343 INFO 2026-06-03 20:31:16 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:94,515,154 INFO 2026-06-03 20:31:17 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:109,495,791 INFO 2026-06-03 20:31:18 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:112,694,786 INFO 2026-06-03 20:31:20 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:116,397,894 INFO 2026-06-03 20:31:21 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:119,950,826 INFO 2026-06-03 20:31:22 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:145,833,517 INFO 2026-06-03 20:31:23 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:148,117,635 INFO 2026-06-03 20:31:24 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:149,813,244 INFO 2026-06-03 20:31:25 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:149,886,272 INFO 2026-06-03 20:31:26 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:150,579,177 INFO 2026-06-03 20:31:27 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:151,364,449 INFO 2026-06-03 20:31:28 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:153,670,177 INFO 2026-06-03 20:31:29 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:154,170,427 INFO 2026-06-03 20:31:31 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:154,597,187 INFO 2026-06-03 20:31:32 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:155,172,773 INFO 2026-06-03 20:31:33 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:155,248,163 INFO 2026-06-03 20:31:34 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:155,950,891 INFO 2026-06-03 20:31:35 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:156,137,688 INFO 2026-06-03 20:31:36 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:156,743,803 INFO 2026-06-03 20:31:37 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:160,297,669 INFO 2026-06-03 20:31:38 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:161,510,865 INFO 2026-06-03 20:31:39 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:165,662,978 INFO 2026-06-03 20:31:41 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:169,131,342 INFO 2026-06-03 20:31:42 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:179,628,469 INFO 2026-06-03 20:31:43 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:183,630,575 INFO 2026-06-03 20:31:44 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:200,407,739 INFO 2026-06-03 20:31:45 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:203,076,385 INFO 2026-06-03 20:31:46 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:205,927,225 INFO 2026-06-03 20:31:47 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:207,061,967 INFO 2026-06-03 20:31:48 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:218,434,108 INFO 2026-06-03 20:31:50 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:225,868,024 INFO 2026-06-03 20:31:51 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:228,359,808 INFO 2026-06-03 20:31:52 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:234,608,913 INFO 2026-06-03 20:31:53 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:245,685,643 INFO 2026-06-03 20:31:54 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr2:10,785,009 INFO 2026-06-03 20:31:55 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr2:24,683,005 INFO 2026-06-03 20:31:56 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr2:27,222,319 INFO 2026-06-03 20:31:57 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr2:28,799,297 INFO 2026-06-03 20:31:59 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,258 INFO 2026-06-03 20:32:00 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264 INFO 2026-06-03 20:32:01 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406 INFO 2026-06-03 20:32:02 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406 INFO 2026-06-03 20:32:03 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr2:39,736,796 INFO 2026-06-03 20:32:04 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr2:43,982,383 INFO 2026-06-03 20:32:05 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr2:54,647,172 INFO 2026-06-03 20:32:06 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr2:63,885,827 INFO 2026-06-03 20:32:07 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr2:70,088,447 INFO 2026-06-03 20:32:08 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr2:74,367,696 INFO 2026-06-03 20:32:10 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr2:85,322,720 INFO 2026-06-03 20:32:11 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr2:86,981,137 INFO 2026-06-03 20:32:12 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr2:96,326,907 INFO 2026-06-03 20:32:13 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr2:101,006,017 INFO 2026-06-03 20:32:14 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr2:108,766,916 INFO 2026-06-03 20:32:15 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr2:112,647,424 INFO 2026-06-03 20:32:16 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr2:127,505,538 INFO 2026-06-03 20:32:17 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr2:135,933,929 INFO 2026-06-03 20:32:18 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr2:159,349,260 INFO 2026-06-03 20:32:19 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr2:174,557,966 INFO 2026-06-03 20:32:21 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr2:182,743,634 INFO 2026-06-03 20:32:22 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr2:189,575,161 INFO 2026-06-03 20:32:23 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr2:197,498,674 INFO 2026-06-03 20:32:24 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr2:206,138,520 INFO 2026-06-03 20:32:25 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr2:215,375,344 INFO 2026-06-03 20:32:26 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr2:215,424,290 INFO 2026-06-03 20:32:27 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr2:218,265,898 INFO 2026-06-03 20:32:28 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr2:219,224,342 INFO 2026-06-03 20:32:29 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr2:229,795,233 INFO 2026-06-03 20:32:31 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr2:231,712,804 INFO 2026-06-03 20:32:32 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr2:237,366,716 INFO 2026-06-03 20:32:33 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr2:240,630,260 INFO 2026-06-03 20:32:34 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr3:4,983,623 INFO 2026-06-03 20:32:35 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr3:11,807,397 INFO 2026-06-03 20:32:36 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr3:15,436,538 INFO 2026-06-03 20:32:37 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr3:33,402,836 INFO 2026-06-03 20:32:38 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr3:39,412,285 INFO 2026-06-03 20:32:39 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr3:45,713,195 INFO 2026-06-03 20:32:41 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr3:47,407,893 INFO 2026-06-03 20:32:42 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr3:48,420,246 INFO 2026-06-03 20:32:43 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr3:48,599,169 INFO 2026-06-03 20:32:44 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr3:49,101,836 INFO 2026-06-03 20:32:45 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr3:49,697,171 INFO 2026-06-03 20:32:46 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr3:51,388,992 INFO 2026-06-03 20:32:47 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr3:52,502,206 INFO 2026-06-03 20:32:48 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr3:53,242,149 INFO 2026-06-03 20:32:49 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr3:62,203,269 INFO 2026-06-03 20:32:51 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr3:100,320,956 INFO 2026-06-03 20:32:52 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr3:119,458,139 INFO 2026-06-03 20:32:53 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr3:124,395,186 INFO 2026-06-03 20:32:54 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr3:128,622,326 INFO 2026-06-03 20:32:55 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr3:132,660,651 INFO 2026-06-03 20:32:56 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr3:146,521,884 INFO 2026-06-03 20:32:57 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr3:160,431,818 INFO 2026-06-03 20:32:58 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr3:183,747,680 INFO 2026-06-03 20:32:59 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr3:184,824,730 INFO 2026-06-03 20:33:01 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr3:194,136,978 INFO 2026-06-03 20:33:02 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr3:195,780,543 INFO 2026-06-03 20:33:03 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr3:195,786,277 INFO 2026-06-03 20:33:04 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr3:197,830,784 INFO 2026-06-03 20:33:05 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr4:1,731,281 INFO 2026-06-03 20:33:06 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr4:2,662,977 INFO 2026-06-03 20:33:07 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr4:7,025,128 INFO 2026-06-03 20:33:08 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr4:24,527,979 INFO 2026-06-03 20:33:09 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr4:41,013,835 INFO 2026-06-03 20:33:10 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr4:69,761,670 INFO 2026-06-03 20:33:12 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr4:73,998,263 INFO 2026-06-03 20:33:13 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr4:76,756,737 INFO 2026-06-03 20:33:14 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr4:87,892,100 INFO 2026-06-03 20:33:15 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr4:113,214,244 INFO 2026-06-03 20:33:16 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr4:145,141,419 INFO 2026-06-03 20:33:17 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr4:173,247,992 INFO 2026-06-03 20:33:18 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr5:665,178 INFO 2026-06-03 20:33:19 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr5:10,748,176 INFO 2026-06-03 20:33:20 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr5:15,500,599 INFO 2026-06-03 20:33:22 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr5:39,153,448 INFO 2026-06-03 20:33:23 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr5:56,923,222 INFO 2026-06-03 20:33:24 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr5:73,498,460 INFO 2026-06-03 20:33:25 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr5:83,540,051 INFO 2026-06-03 20:33:26 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr5:110,761,345 INFO 2026-06-03 20:33:27 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr5:128,084,345 INFO 2026-06-03 20:33:28 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr5:134,205,975 INFO 2026-06-03 20:33:29 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr5:138,419,015 INFO 2026-06-03 20:33:30 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr5:140,510,023 INFO 2026-06-03 20:33:31 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr5:141,644,335 INFO 2026-06-03 20:33:33 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr5:147,824,625 INFO 2026-06-03 20:33:34 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr5:150,135,790 INFO 2026-06-03 20:33:35 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,217 INFO 2026-06-03 20:33:36 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,611 INFO 2026-06-03 20:33:37 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr5:150,404,721 INFO 2026-06-03 20:33:38 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr5:150,405,129 INFO 2026-06-03 20:33:39 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr5:150,406,902 INFO 2026-06-03 20:33:41 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr5:150,412,625 INFO 2026-06-03 20:33:42 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr5:151,674,666 INFO 2026-06-03 20:33:43 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr5:160,602,637 INFO 2026-06-03 20:33:44 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr5:171,391,786 INFO 2026-06-03 20:33:45 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr5:176,347,549 INFO 2026-06-03 20:33:46 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr5:177,436,432 INFO 2026-06-03 20:33:47 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr5:179,207,681 INFO 2026-06-03 20:33:48 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr5:179,811,671 INFO 2026-06-03 20:33:49 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr5:179,836,479 INFO 2026-06-03 20:33:50 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr5:181,260,577 INFO 2026-06-03 20:33:51 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr6:4,892,148 INFO 2026-06-03 20:33:53 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr6:8,015,635 INFO 2026-06-03 20:33:54 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr6:21,594,928 INFO 2026-06-03 20:33:55 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr6:26,199,676 INFO 2026-06-03 20:33:56 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr6:27,808,321 INFO 2026-06-03 20:33:57 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr6:29,556,108 INFO 2026-06-03 20:33:58 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr6:29,943,267 INFO 2026-06-03 20:33:59 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr6:30,490,350 INFO 2026-06-03 20:34:00 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr6:30,888,749 INFO 2026-06-03 20:34:01 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr6:31,271,607 INFO 2026-06-03 20:34:02 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr6:31,536,594 INFO 2026-06-03 20:34:03 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr6:31,649,241 INFO 2026-06-03 20:34:04 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr6:31,816,643 INFO 2026-06-03 20:34:05 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr6:31,829,080 INFO 2026-06-03 20:34:07 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr6:31,946,246 INFO 2026-06-03 20:34:08 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr6:31,997,250 INFO 2026-06-03 20:34:09 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr6:32,129,218 INFO 2026-06-03 20:34:10 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr6:32,581,732 INFO 2026-06-03 20:34:11 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr6:32,850,991 INFO 2026-06-03 20:34:12 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr6:33,007,445 INFO 2026-06-03 20:34:13 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr6:33,304,356 INFO 2026-06-03 20:34:14 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr6:33,669,037 INFO 2026-06-03 20:34:15 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr6:35,795,284 INFO 2026-06-03 20:34:16 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr6:41,594,913 INFO 2026-06-03 20:34:17 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr6:43,171,843 INFO 2026-06-03 20:34:19 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr6:44,251,527 INFO 2026-06-03 20:34:20 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr6:52,420,437 INFO 2026-06-03 20:34:21 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr6:75,237,877 INFO 2026-06-03 20:34:22 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr6:89,655,871 INFO 2026-06-03 20:34:23 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr6:109,368,851 INFO 2026-06-03 20:34:24 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr6:117,907,178 INFO 2026-06-03 20:34:25 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr6:136,698,492 INFO 2026-06-03 20:34:26 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr6:145,954,864 INFO 2026-06-03 20:34:27 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr6:157,982,045 INFO 2026-06-03 20:34:28 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr6:159,682,544 INFO 2026-06-03 20:34:30 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr6:167,003,770 INFO 2026-06-03 20:34:31 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr7:1,476,633 INFO 2026-06-03 20:34:32 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr7:5,222,662 INFO 2026-06-03 20:34:33 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr7:5,501,919 INFO 2026-06-03 20:34:34 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,563 INFO 2026-06-03 20:34:35 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr7:22,145,194 INFO 2026-06-03 20:34:36 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr7:32,980,395 INFO 2026-06-03 20:34:37 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr7:44,211,050 INFO 2026-06-03 20:34:38 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr7:55,146,653 INFO 2026-06-03 20:34:39 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr7:72,942,217 INFO 2026-06-03 20:34:41 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr7:73,831,544 INFO 2026-06-03 20:34:42 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr7:75,416,048 INFO 2026-06-03 20:34:43 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr7:76,330,215 INFO 2026-06-03 20:34:44 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr7:88,210,905 INFO 2026-06-03 20:34:45 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr7:94,409,339 INFO 2026-06-03 20:34:46 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr7:98,933,262 INFO 2026-06-03 20:34:47 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr7:100,112,243 INFO 2026-06-03 20:34:48 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr7:100,582,402 INFO 2026-06-03 20:34:49 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr7:100,953,063 INFO 2026-06-03 20:34:50 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr7:102,457,673 INFO 2026-06-03 20:34:51 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr7:105,105,990 INFO 2026-06-03 20:34:53 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr7:116,506,012 INFO 2026-06-03 20:34:54 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr7:118,184,246 INFO 2026-06-03 20:34:55 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr7:128,658,235 INFO 2026-06-03 20:34:56 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr7:138,460,557 INFO 2026-06-03 20:34:57 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr7:142,772,061 INFO 2026-06-03 20:34:58 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr7:144,366,371 INFO 2026-06-03 20:34:59 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr7:151,036,116 INFO 2026-06-03 20:35:00 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr7:155,739,879 INFO 2026-06-03 20:35:01 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr8:11,850,824 INFO 2026-06-03 20:35:02 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr8:23,006,935 INFO 2026-06-03 20:35:04 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr8:37,698,061 INFO 2026-06-03 20:35:05 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr8:38,846,709 INFO 2026-06-03 20:35:06 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr8:47,737,847 INFO 2026-06-03 20:35:07 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr8:55,740,143 INFO 2026-06-03 20:35:08 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr8:65,841,278 INFO 2026-06-03 20:35:09 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr8:74,320,967 INFO 2026-06-03 20:35:10 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr8:94,881,626 INFO 2026-06-03 20:35:11 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr8:100,706,778 INFO 2026-06-03 20:35:12 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr8:102,858,024 INFO 2026-06-03 20:35:13 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr8:122,952,480 INFO 2026-06-03 20:35:15 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr8:131,968,321 INFO 2026-06-03 20:35:16 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr8:140,541,269 INFO 2026-06-03 20:35:17 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr8:142,775,189 INFO 2026-06-03 20:35:18 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr8:143,575,078 INFO 2026-06-03 20:35:19 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr8:143,727,640 INFO 2026-06-03 20:35:20 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,130 INFO 2026-06-03 20:35:21 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 0s. Last read position: chr8:143,858,596 INFO 2026-06-03 20:35:22 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,125 INFO 2026-06-03 20:35:23 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,923 INFO 2026-06-03 20:35:24 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,593 INFO 2026-06-03 20:35:25 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,135 INFO 2026-06-03 20:35:26 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 0s. Last read position: chr8:143,861,647 INFO 2026-06-03 20:35:27 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,205 INFO 2026-06-03 20:35:28 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,793 INFO 2026-06-03 20:35:29 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,304 INFO 2026-06-03 20:35:30 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,890 INFO 2026-06-03 20:35:31 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,713 INFO 2026-06-03 20:35:32 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 0s. Last read position: chr8:143,865,389 INFO 2026-06-03 20:35:33 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 0s. Last read position: chr8:143,865,926 INFO 2026-06-03 20:35:34 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 0s. Last read position: chr8:143,866,440 INFO 2026-06-03 20:35:35 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr8:143,872,628 INFO 2026-06-03 20:35:36 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr8:143,923,107 INFO 2026-06-03 20:35:37 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr8:143,983,300 INFO 2026-06-03 20:35:39 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr8:144,190,924 INFO 2026-06-03 20:35:40 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr8:144,379,439 INFO 2026-06-03 20:35:41 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr8:144,513,598 INFO 2026-06-03 20:35:42 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr9:4,662,619 INFO 2026-06-03 20:35:43 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr9:32,570,996 INFO 2026-06-03 20:35:44 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr9:35,089,175 INFO 2026-06-03 20:35:45 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr9:37,126,347 INFO 2026-06-03 20:35:46 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr9:79,720,082 INFO 2026-06-03 20:35:47 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr9:92,032,498 INFO 2026-06-03 20:35:48 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr9:97,650,502 INFO 2026-06-03 20:35:50 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr9:107,488,106 INFO 2026-06-03 20:35:51 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr9:114,310,575 INFO 2026-06-03 20:35:52 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr9:121,763,871 INFO 2026-06-03 20:35:53 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr9:127,715,080 INFO 2026-06-03 20:35:54 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr9:128,576,840 INFO 2026-06-03 20:35:55 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr9:129,822,724 INFO 2026-06-03 20:35:56 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr9:131,598,198 INFO 2026-06-03 20:35:57 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr9:134,140,772 INFO 2026-06-03 20:35:58 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr9:136,497,075 INFO 2026-06-03 20:36:00 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr9:137,214,649 INFO 2026-06-03 20:36:01 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr10:4,833,359 INFO 2026-06-03 20:36:02 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr10:12,100,175 INFO 2026-06-03 20:36:03 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr10:24,620,267 INFO 2026-06-03 20:36:04 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr10:32,038,162 INFO 2026-06-03 20:36:05 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr10:45,727,455 INFO 2026-06-03 20:36:06 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr10:47,757,921 INFO 2026-06-03 20:36:07 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr10:60,172,308 INFO 2026-06-03 20:36:08 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr10:70,708,750 INFO 2026-06-03 20:36:09 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr10:73,792,329 INFO 2026-06-03 20:36:11 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr10:79,296,478 INFO 2026-06-03 20:36:12 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr10:87,232,687 INFO 2026-06-03 20:36:13 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr10:95,271,742 INFO 2026-06-03 20:36:14 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr10:99,661,467 INFO 2026-06-03 20:36:15 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr10:102,397,330 INFO 2026-06-03 20:36:16 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr10:112,951,556 INFO 2026-06-03 20:36:17 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr10:119,837,001 INFO 2026-06-03 20:36:18 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr10:122,584,332 INFO 2026-06-03 20:36:19 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr10:122,602,103 INFO 2026-06-03 20:36:20 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr10:122,631,066 INFO 2026-06-03 20:36:21 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr10:129,766,839 INFO 2026-06-03 20:36:23 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr11:308,164 INFO 2026-06-03 20:36:24 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr11:499,092 INFO 2026-06-03 20:36:25 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr11:830,987 INFO 2026-06-03 20:36:26 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr11:1,182,861 INFO 2026-06-03 20:36:27 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr11:1,187,064 INFO 2026-06-03 20:36:28 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr11:1,191,736 INFO 2026-06-03 20:36:29 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr11:1,229,277 INFO 2026-06-03 20:36:30 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr11:1,241,945 INFO 2026-06-03 20:36:31 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr11:1,243,202 INFO 2026-06-03 20:36:32 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr11:1,243,956 INFO 2026-06-03 20:36:33 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr11:1,244,532 INFO 2026-06-03 20:36:34 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr11:1,245,218 INFO 2026-06-03 20:36:35 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr11:1,246,057 INFO 2026-06-03 20:36:36 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr11:1,247,152 INFO 2026-06-03 20:36:37 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr11:1,247,956 INFO 2026-06-03 20:36:38 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr11:1,248,739 INFO 2026-06-03 20:36:39 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr11:1,249,278 INFO 2026-06-03 20:36:40 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr11:1,250,364 INFO 2026-06-03 20:36:41 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr11:1,251,640 INFO 2026-06-03 20:36:42 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr11:1,753,834 INFO 2026-06-03 20:36:43 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr11:3,823,889 INFO 2026-06-03 20:36:45 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr11:8,956,247 INFO 2026-06-03 20:36:46 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr11:17,052,126 INFO 2026-06-03 20:36:47 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr11:34,152,387 INFO 2026-06-03 20:36:48 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr11:46,428,745 INFO 2026-06-03 20:36:49 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr11:57,302,190 INFO 2026-06-03 20:36:50 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr11:57,739,177 INFO 2026-06-03 20:36:51 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr11:60,931,717 INFO 2026-06-03 20:36:52 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr11:61,880,060 INFO 2026-06-03 20:36:53 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr11:62,525,592 INFO 2026-06-03 20:36:54 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr11:62,602,496 INFO 2026-06-03 20:36:56 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr11:62,794,255 INFO 2026-06-03 20:36:57 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr11:64,165,838 INFO 2026-06-03 20:36:58 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr11:64,341,007 INFO 2026-06-03 20:36:59 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr11:64,910,675 INFO 2026-06-03 20:37:00 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr11:65,396,884 INFO 2026-06-03 20:37:01 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr11:65,624,998 INFO 2026-06-03 20:37:02 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr11:65,860,706 INFO 2026-06-03 20:37:03 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr11:66,437,213 INFO 2026-06-03 20:37:04 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr11:67,289,484 INFO 2026-06-03 20:37:05 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr11:67,585,219 INFO 2026-06-03 20:37:07 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr11:68,386,628 INFO 2026-06-03 20:37:08 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr11:69,643,154 INFO 2026-06-03 20:37:09 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr11:72,003,342 INFO 2026-06-03 20:37:10 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr11:72,712,336 INFO 2026-06-03 20:37:11 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr11:74,989,007 INFO 2026-06-03 20:37:12 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr11:77,667,479 INFO 2026-06-03 20:37:13 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr11:94,437,203 INFO 2026-06-03 20:37:14 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr11:102,527,954 INFO 2026-06-03 20:37:15 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr11:116,858,633 INFO 2026-06-03 20:37:16 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr11:118,503,688 INFO 2026-06-03 20:37:18 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr11:119,081,090 INFO 2026-06-03 20:37:19 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr11:122,656,129 INFO 2026-06-03 20:37:20 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr11:128,694,156 INFO 2026-06-03 20:37:21 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr11:134,261,334 INFO 2026-06-03 20:37:22 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr12:4,276,205 INFO 2026-06-03 20:37:23 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr12:6,492,889 INFO 2026-06-03 20:37:24 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr12:6,772,824 INFO 2026-06-03 20:37:25 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr12:6,977,355 INFO 2026-06-03 20:37:26 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr12:8,059,022 INFO 2026-06-03 20:37:27 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr12:11,869,552 INFO 2026-06-03 20:37:29 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr12:18,594,559 INFO 2026-06-03 20:37:30 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr12:31,983,294 INFO 2026-06-03 20:37:31 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr12:47,865,148 INFO 2026-06-03 20:37:32 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr12:49,041,926 INFO 2026-06-03 20:37:33 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr12:49,269,650 INFO 2026-06-03 20:37:34 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr12:50,248,646 INFO 2026-06-03 20:37:35 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr12:52,253,219 INFO 2026-06-03 20:37:36 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr12:52,904,824 INFO 2026-06-03 20:37:37 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr12:53,277,562 INFO 2026-06-03 20:37:38 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr12:54,183,808 INFO 2026-06-03 20:37:40 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr12:55,822,132 INFO 2026-06-03 20:37:41 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr12:56,160,242 INFO 2026-06-03 20:37:42 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr12:56,603,384 INFO 2026-06-03 20:37:43 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr12:57,096,650 INFO 2026-06-03 20:37:44 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr12:57,160,892 INFO 2026-06-03 20:37:45 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr12:57,517,320 INFO 2026-06-03 20:37:46 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr12:63,844,770 INFO 2026-06-03 20:37:47 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr12:69,258,736 INFO 2026-06-03 20:37:48 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr12:79,821,089 INFO 2026-06-03 20:37:50 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr12:98,532,891 INFO 2026-06-03 20:37:51 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr12:104,756,960 INFO 2026-06-03 20:37:52 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr12:110,327,950 INFO 2026-06-03 20:37:53 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr12:112,256,468 INFO 2026-06-03 20:37:54 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr12:116,911,308 INFO 2026-06-03 20:37:55 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr12:120,223,787 INFO 2026-06-03 20:37:56 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr12:121,819,748 INFO 2026-06-03 20:37:57 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr12:123,265,231 INFO 2026-06-03 20:37:58 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr12:124,422,509 INFO 2026-06-03 20:37:59 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr12:132,570,080 INFO 2026-06-03 20:38:01 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr13:23,368,401 INFO 2026-06-03 20:38:02 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr13:40,771,027 INFO 2026-06-03 20:38:03 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr13:51,964,931 INFO 2026-06-03 20:38:04 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr13:77,900,560 INFO 2026-06-03 20:38:05 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr13:109,785,459 INFO 2026-06-03 20:38:06 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 1s. Last read position: chr13:112,785,135 INFO 2026-06-03 20:38:07 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 1s. Last read position: chr14:20,801,797 INFO 2026-06-03 20:38:08 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr14:22,872,188 INFO 2026-06-03 20:38:09 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 1s. Last read position: chr14:23,559,959 INFO 2026-06-03 20:38:11 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr14:24,237,107 INFO 2026-06-03 20:38:12 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 1s. Last read position: chr14:34,586,240 INFO 2026-06-03 20:38:13 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 1s. Last read position: chr14:49,586,712 INFO 2026-06-03 20:38:14 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr14:55,062,633 INFO 2026-06-03 20:38:15 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 1s. Last read position: chr14:64,224,512 INFO 2026-06-03 20:38:16 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr14:69,338,690 INFO 2026-06-03 20:38:17 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 1s. Last read position: chr14:74,295,112 INFO 2026-06-03 20:38:18 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 1s. Last read position: chr14:77,469,082 INFO 2026-06-03 20:38:19 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 1s. Last read position: chr14:92,952,003 INFO 2026-06-03 20:38:20 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 1s. Last read position: chr14:99,510,645 INFO 2026-06-03 20:38:22 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 1s. Last read position: chr14:102,020,034 INFO 2026-06-03 20:38:23 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 1s. Last read position: chr14:103,102,753 INFO 2026-06-03 20:38:24 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 1s. Last read position: chr14:104,710,142 INFO 2026-06-03 20:38:25 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 1s. Last read position: chr14:104,952,934 INFO 2026-06-03 20:38:26 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 1s. Last read position: chr14:105,643,931 INFO 2026-06-03 20:38:27 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 1s. Last read position: chr14:105,708,600 INFO 2026-06-03 20:38:28 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 1s. Last read position: chr14:105,844,830 INFO 2026-06-03 20:38:29 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 1s. Last read position: chr15:30,361,131 INFO 2026-06-03 20:38:30 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 1s. Last read position: chr15:38,484,263 INFO 2026-06-03 20:38:31 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 1s. Last read position: chr15:41,562,552 INFO 2026-06-03 20:38:32 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 1s. Last read position: chr15:43,572,807 INFO 2026-06-03 20:38:34 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 1s. Last read position: chr15:44,651,515 INFO 2026-06-03 20:38:35 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 1s. Last read position: chr15:45,106,930 INFO 2026-06-03 20:38:36 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 1s. Last read position: chr15:45,658,932 INFO 2026-06-03 20:38:37 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 1s. Last read position: chr15:58,184,386 INFO 2026-06-03 20:38:38 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 1s. Last read position: chr15:63,126,957 INFO 2026-06-03 20:38:39 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 1s. Last read position: chr15:66,502,673 INFO 2026-06-03 20:38:40 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 1s. Last read position: chr15:72,375,789 INFO 2026-06-03 20:38:41 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 1s. Last read position: chr15:74,044,451 INFO 2026-06-03 20:38:42 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 1s. Last read position: chr15:75,676,274 INFO 2026-06-03 20:38:43 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 1s. Last read position: chr15:82,461,764 INFO 2026-06-03 20:38:44 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 1s. Last read position: chr15:89,333,489 INFO 2026-06-03 20:38:46 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 1s. Last read position: chr15:96,334,593 INFO 2026-06-03 20:38:47 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 1s. Last read position: chr16:547,877 INFO 2026-06-03 20:38:48 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 1s. Last read position: chr16:1,366,312 INFO 2026-06-03 20:38:49 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 1s. Last read position: chr16:2,036,331 INFO 2026-06-03 20:38:50 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 1s. Last read position: chr16:2,519,391 INFO 2026-06-03 20:38:51 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 1s. Last read position: chr16:2,821,453 INFO 2026-06-03 20:38:52 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 1s. Last read position: chr16:3,773,886 INFO 2026-06-03 20:38:53 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 1s. Last read position: chr16:8,855,213 INFO 2026-06-03 20:38:54 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 1s. Last read position: chr16:11,345,707 INFO 2026-06-03 20:38:55 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr16:14,911,672 INFO 2026-06-03 20:38:57 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 1s. Last read position: chr16:15,718,405 INFO 2026-06-03 20:38:58 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 1s. Last read position: chr16:16,350,297 INFO 2026-06-03 20:38:59 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr16:18,392,099 INFO 2026-06-03 20:39:00 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr16:19,472,123 INFO 2026-06-03 20:39:01 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 1s. Last read position: chr16:21,834,930 INFO 2026-06-03 20:39:02 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr16:22,534,218 INFO 2026-06-03 20:39:03 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 1s. Last read position: chr16:27,464,412 INFO 2026-06-03 20:39:04 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr16:28,735,320 INFO 2026-06-03 20:39:05 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 1s. Last read position: chr16:29,384,186 INFO 2026-06-03 20:39:06 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 1s. Last read position: chr16:29,807,490 INFO 2026-06-03 20:39:07 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr16:30,068,900 INFO 2026-06-03 20:39:08 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr16:30,231,557 INFO 2026-06-03 20:39:09 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr16:30,707,199 INFO 2026-06-03 20:39:10 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr16:30,986,113 INFO 2026-06-03 20:39:12 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr16:31,201,562 INFO 2026-06-03 20:39:13 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr16:51,645,852 INFO 2026-06-03 20:39:14 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr16:57,081,145 INFO 2026-06-03 20:39:15 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr16:66,563,137 INFO 2026-06-03 20:39:16 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr16:67,879,115 INFO 2026-06-03 20:39:17 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr16:69,328,985 INFO 2026-06-03 20:39:18 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr16:71,640,415 INFO 2026-06-03 20:39:19 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr16:75,641,633 INFO 2026-06-03 20:39:20 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr16:85,799,735 INFO 2026-06-03 20:39:21 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr16:88,646,135 INFO 2026-06-03 20:39:23 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr16:89,481,026 INFO 2026-06-03 20:39:24 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr17:321,360 INFO 2026-06-03 20:39:25 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr17:1,423,577 INFO 2026-06-03 20:39:26 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr17:1,725,221 INFO 2026-06-03 20:39:27 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr17:2,695,509 INFO 2026-06-03 20:39:28 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr17:4,076,934 INFO 2026-06-03 20:39:29 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr17:4,735,233 INFO 2026-06-03 20:39:30 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr17:4,948,285 INFO 2026-06-03 20:39:31 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr17:5,539,503 INFO 2026-06-03 20:39:32 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr17:7,240,851 INFO 2026-06-03 20:39:34 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr17:7,462,741 INFO 2026-06-03 20:39:35 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr17:7,514,029 INFO 2026-06-03 20:39:36 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr17:7,849,064 INFO 2026-06-03 20:39:37 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr17:8,229,371 INFO 2026-06-03 20:39:38 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr17:16,382,022 INFO 2026-06-03 20:39:39 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr17:18,670,867 INFO 2026-06-03 20:39:40 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr17:28,355,852 INFO 2026-06-03 20:39:41 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr17:29,094,765 INFO 2026-06-03 20:39:42 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr17:31,993,263 INFO 2026-06-03 20:39:43 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr17:36,089,190 INFO 2026-06-03 20:39:45 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr17:38,318,726 INFO 2026-06-03 20:39:46 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr17:38,853,032 INFO 2026-06-03 20:39:47 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr17:39,710,351 INFO 2026-06-03 20:39:48 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr17:39,730,237 INFO 2026-06-03 20:39:49 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr17:40,630,714 INFO 2026-06-03 20:39:50 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr17:41,764,803 INFO 2026-06-03 20:39:51 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr17:42,513,955 INFO 2026-06-03 20:39:52 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr17:44,036,221 INFO 2026-06-03 20:39:53 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr17:44,883,131 INFO 2026-06-03 20:39:54 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr17:46,296,359 INFO 2026-06-03 20:39:55 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr17:48,551,024 INFO 2026-06-03 20:39:57 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,992 INFO 2026-06-03 20:39:58 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,569 INFO 2026-06-03 20:39:59 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,006 INFO 2026-06-03 20:40:00 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,985 INFO 2026-06-03 20:40:01 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,376 INFO 2026-06-03 20:40:02 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,653 INFO 2026-06-03 20:40:04 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,734 INFO 2026-06-03 20:40:05 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr17:50,468,130 INFO 2026-06-03 20:40:06 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr17:57,108,041 INFO 2026-06-03 20:40:07 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr17:59,685,793 INFO 2026-06-03 20:40:08 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr17:63,836,988 INFO 2026-06-03 20:40:09 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr17:68,205,741 INFO 2026-06-03 20:40:10 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr17:74,749,204 INFO 2026-06-03 20:40:11 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr17:75,522,413 INFO 2026-06-03 20:40:13 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr17:75,778,588 INFO 2026-06-03 20:40:14 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr17:76,270,258 INFO 2026-06-03 20:40:15 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr17:78,071,105 INFO 2026-06-03 20:40:16 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr17:78,973,033 INFO 2026-06-03 20:40:17 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr17:80,298,421 INFO 2026-06-03 20:40:18 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr17:80,363,243 INFO 2026-06-03 20:40:19 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr17:81,459,473 INFO 2026-06-03 20:40:20 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr17:81,846,484 INFO 2026-06-03 20:40:21 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr17:82,082,395 INFO 2026-06-03 20:40:22 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr17:82,443,971 INFO 2026-06-03 20:40:24 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr18:5,396,225 INFO 2026-06-03 20:40:25 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr18:13,752,374 INFO 2026-06-03 20:40:26 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr18:32,412,600 INFO 2026-06-03 20:40:27 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr18:51,177,552 INFO 2026-06-03 20:40:28 SinglePassSamProgram Processed 532,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr18:74,505,933 INFO 2026-06-03 20:40:29 SinglePassSamProgram Processed 533,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr19:622,583 INFO 2026-06-03 20:40:30 SinglePassSamProgram Processed 534,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr19:1,046,900 INFO 2026-06-03 20:40:31 SinglePassSamProgram Processed 535,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr19:1,251,559 INFO 2026-06-03 20:40:32 SinglePassSamProgram Processed 536,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr19:1,619,114 INFO 2026-06-03 20:40:34 SinglePassSamProgram Processed 537,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr19:2,226,915 INFO 2026-06-03 20:40:35 SinglePassSamProgram Processed 538,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr19:3,453,819 INFO 2026-06-03 20:40:36 SinglePassSamProgram Processed 539,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr19:4,361,607 INFO 2026-06-03 20:40:37 SinglePassSamProgram Processed 540,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr19:5,621,386 INFO 2026-06-03 20:40:38 SinglePassSamProgram Processed 541,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr19:6,677,875 INFO 2026-06-03 20:40:39 SinglePassSamProgram Processed 542,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr19:7,125,501 INFO 2026-06-03 20:40:40 SinglePassSamProgram Processed 543,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr19:8,438,465 INFO 2026-06-03 20:40:41 SinglePassSamProgram Processed 544,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr19:9,752,313 INFO 2026-06-03 20:40:42 SinglePassSamProgram Processed 545,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr19:10,491,688 INFO 2026-06-03 20:40:44 SinglePassSamProgram Processed 546,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr19:11,178,553 INFO 2026-06-03 20:40:45 SinglePassSamProgram Processed 547,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr19:12,734,407 INFO 2026-06-03 20:40:46 SinglePassSamProgram Processed 548,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr19:13,804,811 INFO 2026-06-03 20:40:47 SinglePassSamProgram Processed 549,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr19:14,516,002 INFO 2026-06-03 20:40:48 SinglePassSamProgram Processed 550,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr19:15,243,476 INFO 2026-06-03 20:40:49 SinglePassSamProgram Processed 551,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr19:16,093,705 INFO 2026-06-03 20:40:50 SinglePassSamProgram Processed 552,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr19:17,236,030 INFO 2026-06-03 20:40:51 SinglePassSamProgram Processed 553,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr19:17,917,656 INFO 2026-06-03 20:40:52 SinglePassSamProgram Processed 554,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr19:18,564,912 INFO 2026-06-03 20:40:54 SinglePassSamProgram Processed 555,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr19:19,526,246 INFO 2026-06-03 20:40:55 SinglePassSamProgram Processed 556,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr19:33,387,931 INFO 2026-06-03 20:40:56 SinglePassSamProgram Processed 557,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr19:35,123,527 INFO 2026-06-03 20:40:57 SinglePassSamProgram Processed 558,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr19:35,620,015 INFO 2026-06-03 20:40:58 SinglePassSamProgram Processed 559,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr19:35,898,435 INFO 2026-06-03 20:40:59 SinglePassSamProgram Processed 560,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr19:38,264,949 INFO 2026-06-03 20:41:00 SinglePassSamProgram Processed 561,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr19:38,717,950 INFO 2026-06-03 20:41:01 SinglePassSamProgram Processed 562,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr19:39,329,596 INFO 2026-06-03 20:41:02 SinglePassSamProgram Processed 563,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr19:39,834,675 INFO 2026-06-03 20:41:03 SinglePassSamProgram Processed 564,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr19:39,913,926 INFO 2026-06-03 20:41:04 SinglePassSamProgram Processed 565,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr19:40,458,503 INFO 2026-06-03 20:41:06 SinglePassSamProgram Processed 566,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr19:41,264,633 INFO 2026-06-03 20:41:07 SinglePassSamProgram Processed 567,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr19:41,721,091 INFO 2026-06-03 20:41:08 SinglePassSamProgram Processed 568,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr19:42,249,140 INFO 2026-06-03 20:41:09 SinglePassSamProgram Processed 569,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr19:42,292,569 INFO 2026-06-03 20:41:10 SinglePassSamProgram Processed 570,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr19:43,648,965 INFO 2026-06-03 20:41:11 SinglePassSamProgram Processed 571,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr19:44,846,440 INFO 2026-06-03 20:41:12 SinglePassSamProgram Processed 572,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr19:45,032,622 INFO 2026-06-03 20:41:13 SinglePassSamProgram Processed 573,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr19:45,524,650 INFO 2026-06-03 20:41:14 SinglePassSamProgram Processed 574,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr19:46,387,160 INFO 2026-06-03 20:41:15 SinglePassSamProgram Processed 575,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr19:47,090,100 INFO 2026-06-03 20:41:16 SinglePassSamProgram Processed 576,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr19:48,182,618 INFO 2026-06-03 20:41:18 SinglePassSamProgram Processed 577,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr19:48,806,627 INFO 2026-06-03 20:41:19 SinglePassSamProgram Processed 578,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr19:49,108,218 INFO 2026-06-03 20:41:20 SinglePassSamProgram Processed 579,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr19:49,513,439 INFO 2026-06-03 20:41:21 SinglePassSamProgram Processed 580,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr19:49,653,609 INFO 2026-06-03 20:41:22 SinglePassSamProgram Processed 581,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr19:49,861,619 INFO 2026-06-03 20:41:23 SinglePassSamProgram Processed 582,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr19:50,286,544 INFO 2026-06-03 20:41:24 SinglePassSamProgram Processed 583,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr19:51,415,379 INFO 2026-06-03 20:41:25 SinglePassSamProgram Processed 584,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr19:54,174,330 INFO 2026-06-03 20:41:26 SinglePassSamProgram Processed 585,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr19:54,458,517 INFO 2026-06-03 20:41:27 SinglePassSamProgram Processed 586,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr19:55,202,063 INFO 2026-06-03 20:41:28 SinglePassSamProgram Processed 587,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr19:55,592,698 INFO 2026-06-03 20:41:30 SinglePassSamProgram Processed 588,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr19:57,320,731 INFO 2026-06-03 20:41:31 SinglePassSamProgram Processed 589,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr19:58,549,193 INFO 2026-06-03 20:41:32 SinglePassSamProgram Processed 590,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr20:1,571,708 INFO 2026-06-03 20:41:33 SinglePassSamProgram Processed 591,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr20:3,706,410 INFO 2026-06-03 20:41:34 SinglePassSamProgram Processed 592,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr20:11,918,320 INFO 2026-06-03 20:41:35 SinglePassSamProgram Processed 593,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr20:20,037,532 INFO 2026-06-03 20:41:36 SinglePassSamProgram Processed 594,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr20:31,722,192 INFO 2026-06-03 20:41:37 SinglePassSamProgram Processed 595,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr20:33,302,997 INFO 2026-06-03 20:41:38 SinglePassSamProgram Processed 596,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr20:35,146,913 INFO 2026-06-03 20:41:39 SinglePassSamProgram Processed 597,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr20:36,632,536 INFO 2026-06-03 20:41:41 SinglePassSamProgram Processed 598,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr20:38,364,687 INFO 2026-06-03 20:41:42 SinglePassSamProgram Processed 599,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr20:45,174,913 INFO 2026-06-03 20:41:43 SinglePassSamProgram Processed 600,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr20:45,898,399 INFO 2026-06-03 20:41:44 SinglePassSamProgram Processed 601,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr20:49,076,979 INFO 2026-06-03 20:41:45 SinglePassSamProgram Processed 602,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr20:51,674,223 INFO 2026-06-03 20:41:46 SinglePassSamProgram Processed 603,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr20:59,006,326 INFO 2026-06-03 20:41:47 SinglePassSamProgram Processed 604,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr20:62,323,455 INFO 2026-06-03 20:41:48 SinglePassSamProgram Processed 605,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr20:62,813,412 INFO 2026-06-03 20:41:49 SinglePassSamProgram Processed 606,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr20:63,690,345 INFO 2026-06-03 20:41:50 SinglePassSamProgram Processed 607,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr21:5,129,783 INFO 2026-06-03 20:41:52 SinglePassSamProgram Processed 608,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,952 INFO 2026-06-03 20:41:53 SinglePassSamProgram Processed 609,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,924 INFO 2026-06-03 20:41:54 SinglePassSamProgram Processed 610,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr21:8,399,126 INFO 2026-06-03 20:41:55 SinglePassSamProgram Processed 611,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr21:8,441,961 INFO 2026-06-03 20:41:56 SinglePassSamProgram Processed 612,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,566 INFO 2026-06-03 20:41:57 SinglePassSamProgram Processed 613,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr21:32,347,693 INFO 2026-06-03 20:41:58 SinglePassSamProgram Processed 614,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr21:36,237,319 INFO 2026-06-03 20:41:59 SinglePassSamProgram Processed 615,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr21:42,362,323 INFO 2026-06-03 20:42:00 SinglePassSamProgram Processed 616,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr21:44,395,505 INFO 2026-06-03 20:42:01 SinglePassSamProgram Processed 617,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr21:46,003,866 INFO 2026-06-03 20:42:02 SinglePassSamProgram Processed 618,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr22:18,087,956 INFO 2026-06-03 20:42:03 SinglePassSamProgram Processed 619,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr22:21,445,117 INFO 2026-06-03 20:42:04 SinglePassSamProgram Processed 620,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr22:23,767,538 INFO 2026-06-03 20:42:06 SinglePassSamProgram Processed 621,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr22:27,853,531 INFO 2026-06-03 20:42:07 SinglePassSamProgram Processed 622,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr22:29,308,516 INFO 2026-06-03 20:42:08 SinglePassSamProgram Processed 623,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr22:31,575,254 INFO 2026-06-03 20:42:09 SinglePassSamProgram Processed 624,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr22:36,282,697 INFO 2026-06-03 20:42:10 SinglePassSamProgram Processed 625,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr22:36,937,921 INFO 2026-06-03 20:42:11 SinglePassSamProgram Processed 626,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr22:37,843,921 INFO 2026-06-03 20:42:12 SinglePassSamProgram Processed 627,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr22:39,225,740 INFO 2026-06-03 20:42:13 SinglePassSamProgram Processed 628,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr22:41,339,904 INFO 2026-06-03 20:42:14 SinglePassSamProgram Processed 629,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr22:42,786,337 INFO 2026-06-03 20:42:15 SinglePassSamProgram Processed 630,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr22:49,886,340 INFO 2026-06-03 20:42:17 SinglePassSamProgram Processed 631,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr22:50,290,472 INFO 2026-06-03 20:42:18 SinglePassSamProgram Processed 632,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr22:50,526,291 INFO 2026-06-03 20:42:19 SinglePassSamProgram Processed 633,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr22:50,579,459 INFO 2026-06-03 20:42:20 SinglePassSamProgram Processed 634,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chrX:13,569,845 INFO 2026-06-03 20:42:21 SinglePassSamProgram Processed 635,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chrX:40,073,361 INFO 2026-06-03 20:42:22 SinglePassSamProgram Processed 636,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chrX:47,586,541 INFO 2026-06-03 20:42:23 SinglePassSamProgram Processed 637,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chrX:49,829,378 INFO 2026-06-03 20:42:24 SinglePassSamProgram Processed 638,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chrX:54,558,582 INFO 2026-06-03 20:42:25 SinglePassSamProgram Processed 639,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chrX:71,137,255 INFO 2026-06-03 20:42:26 SinglePassSamProgram Processed 640,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chrX:78,104,380 INFO 2026-06-03 20:42:27 SinglePassSamProgram Processed 641,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chrX:108,195,082 INFO 2026-06-03 20:42:29 SinglePassSamProgram Processed 642,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chrX:129,921,419 INFO 2026-06-03 20:42:30 SinglePassSamProgram Processed 643,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chrX:150,660,386 INFO 2026-06-03 20:42:31 SinglePassSamProgram Processed 644,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chrX:153,952,574 INFO 2026-06-03 20:42:32 SinglePassSamProgram Processed 645,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chrX:154,359,036 INFO 2026-06-03 20:42:33 SinglePassSamProgram Processed 646,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chrX:154,437,266 INFO 2026-06-03 20:42:34 SinglePassSamProgram Processed 647,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chrY:22,724,737 INFO 2026-06-03 20:42:35 SinglePassSamProgram Processed 648,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: GL000220.1:115,419 INFO 2026-06-03 20:42:36 SinglePassSamProgram Processed 649,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: GL000220.1:158,105 INFO 2026-06-03 20:42:37 SinglePassSamProgram Processed 650,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: GL000220.1:160,606 INFO 2026-06-03 20:42:38 SinglePassSamProgram Processed 651,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: KI270733.1:131,032 INFO 2026-06-03 20:42:39 SinglePassSamProgram Processed 652,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: KI270733.1:174,623 INFO 2026-06-03 20:42:40 SinglePassSamProgram Processed 653,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,257 INFO 2026-06-03 20:42:41 RExecutor Executing R script via command: Rscript /tmp/script12514259340473881236.R /tmp/nxf.XXXXbRxnjn/aih-tih-sc-150e73-R1_A23YTGFLT4_1_collectinsertsize.txt /tmp/nxf.XXXXbRxnjn/aih-tih-sc-150e73-R1_A23YTGFLT4_1_collectinsertsize.pdf aih-tih-sc-150e73-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam ERROR 2026-06-03 20:42:41 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:42:41 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:42:41 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:42:41 ProcessExecutor During startup - Warning messages: ERROR 2026-06-03 20:42:41 ProcessExecutor 1: Setting LC_CTYPE failed, using "C" ERROR 2026-06-03 20:42:41 ProcessExecutor 2: Setting LC_COLLATE failed, using "C" ERROR 2026-06-03 20:42:41 ProcessExecutor 3: Setting LC_TIME failed, using "C" ERROR 2026-06-03 20:42:41 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C" ERROR 2026-06-03 20:42:41 ProcessExecutor 5: Setting LC_MONETARY failed, using "C" ERROR 2026-06-03 20:42:41 ProcessExecutor 6: Setting LC_PAPER failed, using "C" ERROR 2026-06-03 20:42:41 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C" INFO 2026-06-03 20:42:41 ProcessExecutor null device INFO 2026-06-03 20:42:41 ProcessExecutor 1 ERROR 2026-06-03 20:42:41 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) [Wed Jun 03 20:42:41 GMT 2026] picard.analysis.CollectInsertSizeMetrics done. Elapsed time: 11.96 minutes. Runtime.totalMemory()=346030080