Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/6108b41fd9cb3ad2b68da6f6b336a7/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/6108b41fd9cb3ad2b68da6f6b336a7/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/184faea4f130c0eae580ccd3e890be/aih-tih-sc-31d31f-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-31d31f-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-31d31f-R1_A23YTGFLT4_1.md.bam --METRICS_FILE aih-tih-sc-31d31f-R1_A23YTGFLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
19:42:23.507 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Wed Jun 03 19:42:23 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-31d31f-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-31d31f-R1_A23YTGFLT4_1.md.bam --METRICS_FILE aih-tih-sc-31d31f-R1_A23YTGFLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Wed Jun 03 19:42:23 GMT 2026] Executing as ?@nf-896108b41fd9cb3ad2b68da6f6b336a7-cdde1-bq8d9 on Linux 6.12.83 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-03 19:42:23 MarkDuplicates Start of doWork freeMemory: 105829248; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-03 19:42:23 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-03 19:42:23 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-03 19:42:29 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 3s. Last read position: chr1:1,472,007
INFO 2026-06-03 19:42:29 MarkDuplicates Tracking 1749 as yet unmatched pairs. 123 records in RAM.
INFO 2026-06-03 19:42:32 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 3s. Last read position: chr1:6,253,768
INFO 2026-06-03 19:42:32 MarkDuplicates Tracking 3256 as yet unmatched pairs. 245 records in RAM.
INFO 2026-06-03 19:42:36 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 3s. Last read position: chr1:9,744,613
INFO 2026-06-03 19:42:36 MarkDuplicates Tracking 4656 as yet unmatched pairs. 122 records in RAM.
INFO 2026-06-03 19:42:38 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 2s. Last read position: chr1:13,782,367
INFO 2026-06-03 19:42:38 MarkDuplicates Tracking 6273 as yet unmatched pairs. 249 records in RAM.
INFO 2026-06-03 19:42:41 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:17,069,133
INFO 2026-06-03 19:42:41 MarkDuplicates Tracking 7607 as yet unmatched pairs. 276 records in RAM.
INFO 2026-06-03 19:42:43 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:20,941,734
INFO 2026-06-03 19:42:43 MarkDuplicates Tracking 9024 as yet unmatched pairs. 184 records in RAM.
INFO 2026-06-03 19:42:46 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 2s. Last read position: chr1:22,639,312
INFO 2026-06-03 19:42:46 MarkDuplicates Tracking 10429 as yet unmatched pairs. 169 records in RAM.
INFO 2026-06-03 19:42:49 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 2s. Last read position: chr1:25,829,606
INFO 2026-06-03 19:42:49 MarkDuplicates Tracking 11805 as yet unmatched pairs. 144 records in RAM.
INFO 2026-06-03 19:42:51 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 2s. Last read position: chr1:27,552,007
INFO 2026-06-03 19:42:51 MarkDuplicates Tracking 13350 as yet unmatched pairs. 133 records in RAM.
INFO 2026-06-03 19:42:53 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 1s. Last read position: chr1:32,226,415
INFO 2026-06-03 19:42:53 MarkDuplicates Tracking 14657 as yet unmatched pairs. 111 records in RAM.
INFO 2026-06-03 19:42:55 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:35,192,643
INFO 2026-06-03 19:42:55 MarkDuplicates Tracking 16547 as yet unmatched pairs. 474 records in RAM.
INFO 2026-06-03 19:42:58 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 3s. Last read position: chr1:39,387,236
INFO 2026-06-03 19:42:58 MarkDuplicates Tracking 17509 as yet unmatched pairs. 160 records in RAM.
INFO 2026-06-03 19:43:00 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 2s. Last read position: chr1:43,312,370
INFO 2026-06-03 19:43:00 MarkDuplicates Tracking 18952 as yet unmatched pairs. 89 records in RAM.
INFO 2026-06-03 19:43:03 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 2s. Last read position: chr1:45,676,842
INFO 2026-06-03 19:43:03 MarkDuplicates Tracking 20301 as yet unmatched pairs. 8 records in RAM.
INFO 2026-06-03 19:43:06 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 2s. Last read position: chr1:52,950,776
INFO 2026-06-03 19:43:06 MarkDuplicates Tracking 21837 as yet unmatched pairs. 66 records in RAM.
INFO 2026-06-03 19:43:07 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:67,269,552
INFO 2026-06-03 19:43:07 MarkDuplicates Tracking 23187 as yet unmatched pairs. 8 records in RAM.
INFO 2026-06-03 19:43:09 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 2s. Last read position: chr1:93,582,725
INFO 2026-06-03 19:43:09 MarkDuplicates Tracking 24602 as yet unmatched pairs. 150 records in RAM.
INFO 2026-06-03 19:43:12 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 2s. Last read position: chr1:110,341,327
INFO 2026-06-03 19:43:12 MarkDuplicates Tracking 26142 as yet unmatched pairs. 582 records in RAM.
INFO 2026-06-03 19:43:14 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 2s. Last read position: chr1:115,976,658
INFO 2026-06-03 19:43:14 MarkDuplicates Tracking 26784 as yet unmatched pairs. 40 records in RAM.
INFO 2026-06-03 19:43:16 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:143,904,241
INFO 2026-06-03 19:43:16 MarkDuplicates Tracking 27696 as yet unmatched pairs. 8 records in RAM.
INFO 2026-06-03 19:43:18 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 2s. Last read position: chr1:148,564,860
INFO 2026-06-03 19:43:18 MarkDuplicates Tracking 28396 as yet unmatched pairs. 62 records in RAM.
INFO 2026-06-03 19:43:21 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 2s. Last read position: chr1:150,338,236
INFO 2026-06-03 19:43:21 MarkDuplicates Tracking 29374 as yet unmatched pairs. 142 records in RAM.
INFO 2026-06-03 19:43:23 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 2s. Last read position: chr1:151,520,226
INFO 2026-06-03 19:43:23 MarkDuplicates Tracking 30881 as yet unmatched pairs. 177 records in RAM.
INFO 2026-06-03 19:43:25 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 2s. Last read position: chr1:154,170,419
INFO 2026-06-03 19:43:25 MarkDuplicates Tracking 34376 as yet unmatched pairs. 2537 records in RAM.
INFO 2026-06-03 19:43:28 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 2s. Last read position: chr1:155,181,854
INFO 2026-06-03 19:43:28 MarkDuplicates Tracking 33235 as yet unmatched pairs. 51 records in RAM.
INFO 2026-06-03 19:43:30 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:156,042,285
INFO 2026-06-03 19:43:30 MarkDuplicates Tracking 34289 as yet unmatched pairs. 37 records in RAM.
INFO 2026-06-03 19:43:32 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:156,969,302
INFO 2026-06-03 19:43:32 MarkDuplicates Tracking 36092 as yet unmatched pairs. 92 records in RAM.
INFO 2026-06-03 19:43:33 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:167,054,274
INFO 2026-06-03 19:43:33 MarkDuplicates Tracking 37439 as yet unmatched pairs. 241 records in RAM.
INFO 2026-06-03 19:43:36 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 2s. Last read position: chr1:178,024,040
INFO 2026-06-03 19:43:36 MarkDuplicates Tracking 38439 as yet unmatched pairs. 2 records in RAM.
INFO 2026-06-03 19:43:38 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 2s. Last read position: chr1:186,339,745
INFO 2026-06-03 19:43:38 MarkDuplicates Tracking 39942 as yet unmatched pairs. 186 records in RAM.
INFO 2026-06-03 19:43:40 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 2s. Last read position: chr1:202,422,672
INFO 2026-06-03 19:43:40 MarkDuplicates Tracking 41096 as yet unmatched pairs. 56 records in RAM.
INFO 2026-06-03 19:43:43 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 2s. Last read position: chr1:206,685,211
INFO 2026-06-03 19:43:43 MarkDuplicates Tracking 42700 as yet unmatched pairs. 407 records in RAM.
INFO 2026-06-03 19:43:45 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 2s. Last read position: chr1:207,336,807
INFO 2026-06-03 19:43:45 MarkDuplicates Tracking 43748 as yet unmatched pairs. 151 records in RAM.
INFO 2026-06-03 19:43:47 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:223,619,357
INFO 2026-06-03 19:43:47 MarkDuplicates Tracking 44815 as yet unmatched pairs. 56 records in RAM.
INFO 2026-06-03 19:43:49 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:228,271,963
INFO 2026-06-03 19:43:49 MarkDuplicates Tracking 46152 as yet unmatched pairs. 10 records in RAM.
INFO 2026-06-03 19:43:51 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 2s. Last read position: chr1:236,064,882
INFO 2026-06-03 19:43:51 MarkDuplicates Tracking 48143 as yet unmatched pairs. 186 records in RAM.
INFO 2026-06-03 19:43:54 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 2s. Last read position: chr2:3,388,596
INFO 2026-06-03 19:43:54 MarkDuplicates Tracking 49715 as yet unmatched pairs. 49604 records in RAM.
INFO 2026-06-03 19:43:57 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 2s. Last read position: chr2:20,278,599
INFO 2026-06-03 19:43:57 MarkDuplicates Tracking 50923 as yet unmatched pairs. 50808 records in RAM.
INFO 2026-06-03 19:43:59 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 2s. Last read position: chr2:27,234,628
INFO 2026-06-03 19:43:59 MarkDuplicates Tracking 52244 as yet unmatched pairs. 52124 records in RAM.
INFO 2026-06-03 19:44:02 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,254
INFO 2026-06-03 19:44:02 MarkDuplicates Tracking 76907 as yet unmatched pairs. 52135 records in RAM.
INFO 2026-06-03 19:44:05 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,273
INFO 2026-06-03 19:44:05 MarkDuplicates Tracking 450099 as yet unmatched pairs. 31716 records in RAM.
INFO 2026-06-03 19:44:07 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,444
INFO 2026-06-03 19:44:07 MarkDuplicates Tracking 527678 as yet unmatched pairs. 27900 records in RAM.
INFO 2026-06-03 19:44:09 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 2s. Last read position: chr2:43,225,006
INFO 2026-06-03 19:44:09 MarkDuplicates Tracking 527655 as yet unmatched pairs. 26582 records in RAM.
INFO 2026-06-03 19:44:12 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 3s. Last read position: chr2:54,626,099
INFO 2026-06-03 19:44:12 MarkDuplicates Tracking 526066 as yet unmatched pairs. 24991 records in RAM.
INFO 2026-06-03 19:44:15 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 2s. Last read position: chr2:61,348,354
INFO 2026-06-03 19:44:15 MarkDuplicates Tracking 524589 as yet unmatched pairs. 23511 records in RAM.
INFO 2026-06-03 19:44:18 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 2s. Last read position: chr2:71,388,662
INFO 2026-06-03 19:44:18 MarkDuplicates Tracking 523298 as yet unmatched pairs. 22218 records in RAM.
INFO 2026-06-03 19:44:20 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 2s. Last read position: chr2:74,878,916
INFO 2026-06-03 19:44:20 MarkDuplicates Tracking 521986 as yet unmatched pairs. 20903 records in RAM.
INFO 2026-06-03 19:44:22 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 2s. Last read position: chr2:88,126,308
INFO 2026-06-03 19:44:22 MarkDuplicates Tracking 520800 as yet unmatched pairs. 19713 records in RAM.
INFO 2026-06-03 19:44:24 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 2s. Last read position: chr2:97,792,436
INFO 2026-06-03 19:44:24 MarkDuplicates Tracking 519720 as yet unmatched pairs. 18630 records in RAM.
INFO 2026-06-03 19:44:28 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 3s. Last read position: chr2:108,754,937
INFO 2026-06-03 19:44:28 MarkDuplicates Tracking 518635 as yet unmatched pairs. 17535 records in RAM.
INFO 2026-06-03 19:44:30 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 2s. Last read position: chr2:111,873,329
INFO 2026-06-03 19:44:30 MarkDuplicates Tracking 517567 as yet unmatched pairs. 16462 records in RAM.
INFO 2026-06-03 19:44:33 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 2s. Last read position: chr2:127,605,899
INFO 2026-06-03 19:44:33 MarkDuplicates Tracking 516840 as yet unmatched pairs. 15731 records in RAM.
INFO 2026-06-03 19:44:35 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 2s. Last read position: chr2:148,483,657
INFO 2026-06-03 19:44:35 MarkDuplicates Tracking 515099 as yet unmatched pairs. 13981 records in RAM.
INFO 2026-06-03 19:44:37 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 2s. Last read position: chr2:170,965,794
INFO 2026-06-03 19:44:37 MarkDuplicates Tracking 514033 as yet unmatched pairs. 12911 records in RAM.
INFO 2026-06-03 19:44:39 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:181,531,742
INFO 2026-06-03 19:44:39 MarkDuplicates Tracking 512709 as yet unmatched pairs. 11583 records in RAM.
INFO 2026-06-03 19:44:41 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 2s. Last read position: chr2:190,998,271
INFO 2026-06-03 19:44:41 MarkDuplicates Tracking 511188 as yet unmatched pairs. 10059 records in RAM.
INFO 2026-06-03 19:44:44 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 2s. Last read position: chr2:203,112,042
INFO 2026-06-03 19:44:44 MarkDuplicates Tracking 510045 as yet unmatched pairs. 8913 records in RAM.
INFO 2026-06-03 19:44:46 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 2s. Last read position: chr2:215,379,269
INFO 2026-06-03 19:44:46 MarkDuplicates Tracking 509247 as yet unmatched pairs. 8113 records in RAM.
INFO 2026-06-03 19:44:48 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 2s. Last read position: chr2:218,392,980
INFO 2026-06-03 19:44:48 MarkDuplicates Tracking 507518 as yet unmatched pairs. 6384 records in RAM.
INFO 2026-06-03 19:44:51 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 2s. Last read position: chr2:224,862,694
INFO 2026-06-03 19:44:51 MarkDuplicates Tracking 506102 as yet unmatched pairs. 4936 records in RAM.
INFO 2026-06-03 19:44:54 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 3s. Last read position: chr2:231,521,013
INFO 2026-06-03 19:44:54 MarkDuplicates Tracking 504772 as yet unmatched pairs. 3605 records in RAM.
INFO 2026-06-03 19:44:57 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 2s. Last read position: chr2:237,377,165
INFO 2026-06-03 19:44:57 MarkDuplicates Tracking 503434 as yet unmatched pairs. 2264 records in RAM.
INFO 2026-06-03 19:44:59 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 2s. Last read position: chr2:241,240,065
INFO 2026-06-03 19:44:59 MarkDuplicates Tracking 501862 as yet unmatched pairs. 689 records in RAM.
INFO 2026-06-03 19:45:02 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 2s. Last read position: chr3:9,933,056
INFO 2026-06-03 19:45:02 MarkDuplicates Tracking 500558 as yet unmatched pairs. 24812 records in RAM.
INFO 2026-06-03 19:45:04 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 2s. Last read position: chr3:18,349,426
INFO 2026-06-03 19:45:04 MarkDuplicates Tracking 499303 as yet unmatched pairs. 23553 records in RAM.
INFO 2026-06-03 19:45:07 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 2s. Last read position: chr3:38,020,230
INFO 2026-06-03 19:45:07 MarkDuplicates Tracking 497754 as yet unmatched pairs. 22000 records in RAM.
INFO 2026-06-03 19:45:09 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 2s. Last read position: chr3:45,118,457
INFO 2026-06-03 19:45:09 MarkDuplicates Tracking 496274 as yet unmatched pairs. 20516 records in RAM.
INFO 2026-06-03 19:45:11 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 2s. Last read position: chr3:47,916,804
INFO 2026-06-03 19:45:11 MarkDuplicates Tracking 494891 as yet unmatched pairs. 19129 records in RAM.
INFO 2026-06-03 19:45:13 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 2s. Last read position: chr3:49,006,123
INFO 2026-06-03 19:45:13 MarkDuplicates Tracking 493183 as yet unmatched pairs. 17421 records in RAM.
INFO 2026-06-03 19:45:15 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 2s. Last read position: chr3:49,972,125
INFO 2026-06-03 19:45:15 MarkDuplicates Tracking 491773 as yet unmatched pairs. 16011 records in RAM.
INFO 2026-06-03 19:45:17 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr3:52,502,009
INFO 2026-06-03 19:45:17 MarkDuplicates Tracking 490212 as yet unmatched pairs. 14447 records in RAM.
INFO 2026-06-03 19:45:20 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 2s. Last read position: chr3:58,524,588
INFO 2026-06-03 19:45:20 MarkDuplicates Tracking 488841 as yet unmatched pairs. 13064 records in RAM.
INFO 2026-06-03 19:45:22 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr3:100,386,886
INFO 2026-06-03 19:45:22 MarkDuplicates Tracking 487627 as yet unmatched pairs. 11842 records in RAM.
INFO 2026-06-03 19:45:23 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr3:121,694,567
INFO 2026-06-03 19:45:23 MarkDuplicates Tracking 486612 as yet unmatched pairs. 10825 records in RAM.
INFO 2026-06-03 19:45:26 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 2s. Last read position: chr3:127,014,711
INFO 2026-06-03 19:45:26 MarkDuplicates Tracking 485114 as yet unmatched pairs. 9324 records in RAM.
INFO 2026-06-03 19:45:28 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 2s. Last read position: chr3:134,486,543
INFO 2026-06-03 19:45:28 MarkDuplicates Tracking 483562 as yet unmatched pairs. 7767 records in RAM.
INFO 2026-06-03 19:45:31 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 2s. Last read position: chr3:158,665,346
INFO 2026-06-03 19:45:31 MarkDuplicates Tracking 482458 as yet unmatched pairs. 6659 records in RAM.
INFO 2026-06-03 19:45:33 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 2s. Last read position: chr3:184,142,321
INFO 2026-06-03 19:45:33 MarkDuplicates Tracking 481234 as yet unmatched pairs. 5431 records in RAM.
INFO 2026-06-03 19:45:35 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 2s. Last read position: chr3:188,524,726
INFO 2026-06-03 19:45:35 MarkDuplicates Tracking 481772 as yet unmatched pairs. 5968 records in RAM.
INFO 2026-06-03 19:45:37 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr3:195,725,206
INFO 2026-06-03 19:45:37 MarkDuplicates Tracking 479701 as yet unmatched pairs. 3895 records in RAM.
INFO 2026-06-03 19:45:39 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr3:195,779,581
INFO 2026-06-03 19:45:39 MarkDuplicates Tracking 479143 as yet unmatched pairs. 3337 records in RAM.
INFO 2026-06-03 19:45:41 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 2s. Last read position: chr3:195,783,512
INFO 2026-06-03 19:45:41 MarkDuplicates Tracking 478794 as yet unmatched pairs. 2986 records in RAM.
INFO 2026-06-03 19:45:43 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 2s. Last read position: chr3:195,787,869
INFO 2026-06-03 19:45:43 MarkDuplicates Tracking 477760 as yet unmatched pairs. 1950 records in RAM.
INFO 2026-06-03 19:45:45 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 2s. Last read position: chr3:197,951,157
INFO 2026-06-03 19:45:45 MarkDuplicates Tracking 475888 as yet unmatched pairs. 75 records in RAM.
INFO 2026-06-03 19:45:48 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 2s. Last read position: chr4:1,804,946
INFO 2026-06-03 19:45:48 MarkDuplicates Tracking 474756 as yet unmatched pairs. 12723 records in RAM.
INFO 2026-06-03 19:45:50 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 2s. Last read position: chr4:6,863,295
INFO 2026-06-03 19:45:50 MarkDuplicates Tracking 472750 as yet unmatched pairs. 10714 records in RAM.
INFO 2026-06-03 19:45:52 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 2s. Last read position: chr4:25,662,552
INFO 2026-06-03 19:45:52 MarkDuplicates Tracking 471263 as yet unmatched pairs. 9224 records in RAM.
INFO 2026-06-03 19:45:55 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 2s. Last read position: chr4:54,064,190
INFO 2026-06-03 19:45:55 MarkDuplicates Tracking 469957 as yet unmatched pairs. 7914 records in RAM.
INFO 2026-06-03 19:45:57 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 2s. Last read position: chr4:73,156,044
INFO 2026-06-03 19:45:57 MarkDuplicates Tracking 468661 as yet unmatched pairs. 6606 records in RAM.
INFO 2026-06-03 19:45:59 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 2s. Last read position: chr4:83,094,744
INFO 2026-06-03 19:45:59 MarkDuplicates Tracking 468932 as yet unmatched pairs. 6874 records in RAM.
INFO 2026-06-03 19:46:01 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 2s. Last read position: chr4:106,328,115
INFO 2026-06-03 19:46:01 MarkDuplicates Tracking 466069 as yet unmatched pairs. 4007 records in RAM.
INFO 2026-06-03 19:46:04 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 2s. Last read position: chr4:139,147,812
INFO 2026-06-03 19:46:04 MarkDuplicates Tracking 464901 as yet unmatched pairs. 2835 records in RAM.
INFO 2026-06-03 19:46:06 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 2s. Last read position: chr4:153,168,487
INFO 2026-06-03 19:46:06 MarkDuplicates Tracking 463898 as yet unmatched pairs. 1828 records in RAM.
INFO 2026-06-03 19:46:08 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 2s. Last read position: chr4:186,611,388
INFO 2026-06-03 19:46:08 MarkDuplicates Tracking 462511 as yet unmatched pairs. 434 records in RAM.
INFO 2026-06-03 19:46:11 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 2s. Last read position: chr5:10,258,278
INFO 2026-06-03 19:46:11 MarkDuplicates Tracking 460969 as yet unmatched pairs. 20317 records in RAM.
INFO 2026-06-03 19:46:13 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 2s. Last read position: chr5:16,475,044
INFO 2026-06-03 19:46:13 MarkDuplicates Tracking 459546 as yet unmatched pairs. 18890 records in RAM.
INFO 2026-06-03 19:46:16 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 2s. Last read position: chr5:42,801,093
INFO 2026-06-03 19:46:16 MarkDuplicates Tracking 461136 as yet unmatched pairs. 20472 records in RAM.
INFO 2026-06-03 19:46:18 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr5:69,365,259
INFO 2026-06-03 19:46:18 MarkDuplicates Tracking 457084 as yet unmatched pairs. 16415 records in RAM.
INFO 2026-06-03 19:46:20 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 2s. Last read position: chr5:82,269,947
INFO 2026-06-03 19:46:20 MarkDuplicates Tracking 455912 as yet unmatched pairs. 15232 records in RAM.
INFO 2026-06-03 19:46:22 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 2s. Last read position: chr5:113,018,370
INFO 2026-06-03 19:46:22 MarkDuplicates Tracking 454635 as yet unmatched pairs. 13949 records in RAM.
INFO 2026-06-03 19:46:24 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 2s. Last read position: chr5:132,822,999
INFO 2026-06-03 19:46:24 MarkDuplicates Tracking 453508 as yet unmatched pairs. 12812 records in RAM.
INFO 2026-06-03 19:46:26 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr5:138,466,995
INFO 2026-06-03 19:46:26 MarkDuplicates Tracking 451857 as yet unmatched pairs. 11157 records in RAM.
INFO 2026-06-03 19:46:28 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr5:141,102,404
INFO 2026-06-03 19:46:28 MarkDuplicates Tracking 450440 as yet unmatched pairs. 9619 records in RAM.
INFO 2026-06-03 19:46:29 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr5:146,459,124
INFO 2026-06-03 19:46:29 MarkDuplicates Tracking 449473 as yet unmatched pairs. 8651 records in RAM.
INFO 2026-06-03 19:46:32 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 2s. Last read position: chr5:150,402,568
INFO 2026-06-03 19:46:32 MarkDuplicates Tracking 449525 as yet unmatched pairs. 8702 records in RAM.
INFO 2026-06-03 19:46:34 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 2s. Last read position: chr5:154,792,679
INFO 2026-06-03 19:46:34 MarkDuplicates Tracking 446579 as yet unmatched pairs. 5755 records in RAM.
INFO 2026-06-03 19:46:37 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 2s. Last read position: chr5:171,392,962
INFO 2026-06-03 19:46:37 MarkDuplicates Tracking 445934 as yet unmatched pairs. 5106 records in RAM.
INFO 2026-06-03 19:46:39 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 2s. Last read position: chr5:177,366,195
INFO 2026-06-03 19:46:39 MarkDuplicates Tracking 443956 as yet unmatched pairs. 3123 records in RAM.
INFO 2026-06-03 19:46:40 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr5:179,797,997
INFO 2026-06-03 19:46:40 MarkDuplicates Tracking 442686 as yet unmatched pairs. 1848 records in RAM.
INFO 2026-06-03 19:46:42 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr5:181,260,264
INFO 2026-06-03 19:46:42 MarkDuplicates Tracking 440897 as yet unmatched pairs. 59 records in RAM.
INFO 2026-06-03 19:46:44 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 2s. Last read position: chr6:7,247,193
INFO 2026-06-03 19:46:44 MarkDuplicates Tracking 439344 as yet unmatched pairs. 22317 records in RAM.
INFO 2026-06-03 19:46:46 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr6:21,594,598
INFO 2026-06-03 19:46:46 MarkDuplicates Tracking 438070 as yet unmatched pairs. 21034 records in RAM.
INFO 2026-06-03 19:46:48 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr6:29,610,960
INFO 2026-06-03 19:46:48 MarkDuplicates Tracking 436523 as yet unmatched pairs. 19482 records in RAM.
INFO 2026-06-03 19:46:49 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr6:30,720,432
INFO 2026-06-03 19:46:49 MarkDuplicates Tracking 435172 as yet unmatched pairs. 18131 records in RAM.
INFO 2026-06-03 19:46:52 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 2s. Last read position: chr6:31,631,828
INFO 2026-06-03 19:46:52 MarkDuplicates Tracking 434051 as yet unmatched pairs. 17010 records in RAM.
INFO 2026-06-03 19:46:54 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 2s. Last read position: chr6:31,956,979
INFO 2026-06-03 19:46:54 MarkDuplicates Tracking 432837 as yet unmatched pairs. 15790 records in RAM.
INFO 2026-06-03 19:46:56 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 2s. Last read position: chr6:33,290,755
INFO 2026-06-03 19:46:56 MarkDuplicates Tracking 431457 as yet unmatched pairs. 14410 records in RAM.
INFO 2026-06-03 19:46:59 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 2s. Last read position: chr6:35,470,578
INFO 2026-06-03 19:46:59 MarkDuplicates Tracking 430090 as yet unmatched pairs. 13041 records in RAM.
INFO 2026-06-03 19:47:01 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 2s. Last read position: chr6:43,019,125
INFO 2026-06-03 19:47:01 MarkDuplicates Tracking 428591 as yet unmatched pairs. 11540 records in RAM.
INFO 2026-06-03 19:47:03 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr6:47,286,210
INFO 2026-06-03 19:47:03 MarkDuplicates Tracking 427148 as yet unmatched pairs. 10097 records in RAM.
INFO 2026-06-03 19:47:05 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr6:63,685,295
INFO 2026-06-03 19:47:05 MarkDuplicates Tracking 426062 as yet unmatched pairs. 9009 records in RAM.
INFO 2026-06-03 19:47:07 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 2s. Last read position: chr6:89,352,548
INFO 2026-06-03 19:47:07 MarkDuplicates Tracking 424838 as yet unmatched pairs. 7781 records in RAM.
INFO 2026-06-03 19:47:09 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 2s. Last read position: chr6:110,967,613
INFO 2026-06-03 19:47:09 MarkDuplicates Tracking 423488 as yet unmatched pairs. 6423 records in RAM.
INFO 2026-06-03 19:47:11 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 2s. Last read position: chr6:130,869,797
INFO 2026-06-03 19:47:11 MarkDuplicates Tracking 422348 as yet unmatched pairs. 5273 records in RAM.
INFO 2026-06-03 19:47:14 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 2s. Last read position: chr6:138,945,360
INFO 2026-06-03 19:47:14 MarkDuplicates Tracking 420979 as yet unmatched pairs. 3903 records in RAM.
INFO 2026-06-03 19:47:16 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 2s. Last read position: chr6:154,832,966
INFO 2026-06-03 19:47:16 MarkDuplicates Tracking 419582 as yet unmatched pairs. 2505 records in RAM.
INFO 2026-06-03 19:47:18 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 2s. Last read position: chr6:160,069,907
INFO 2026-06-03 19:47:18 MarkDuplicates Tracking 418083 as yet unmatched pairs. 1004 records in RAM.
INFO 2026-06-03 19:47:21 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 2s. Last read position: chr7:1,435,148
INFO 2026-06-03 19:47:21 MarkDuplicates Tracking 416650 as yet unmatched pairs. 41917 records in RAM.
INFO 2026-06-03 19:47:23 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr7:5,362,689
INFO 2026-06-03 19:47:23 MarkDuplicates Tracking 415235 as yet unmatched pairs. 40502 records in RAM.
INFO 2026-06-03 19:47:25 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 2s. Last read position: chr7:5,923,945
INFO 2026-06-03 19:47:25 MarkDuplicates Tracking 413450 as yet unmatched pairs. 38717 records in RAM.
INFO 2026-06-03 19:47:27 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr7:27,145,607
INFO 2026-06-03 19:47:27 MarkDuplicates Tracking 412144 as yet unmatched pairs. 37405 records in RAM.
INFO 2026-06-03 19:47:29 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr7:44,104,844
INFO 2026-06-03 19:47:29 MarkDuplicates Tracking 410719 as yet unmatched pairs. 35973 records in RAM.
INFO 2026-06-03 19:47:31 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr7:55,687,835
INFO 2026-06-03 19:47:31 MarkDuplicates Tracking 409080 as yet unmatched pairs. 34334 records in RAM.
INFO 2026-06-03 19:47:32 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr7:73,296,877
INFO 2026-06-03 19:47:32 MarkDuplicates Tracking 408271 as yet unmatched pairs. 33519 records in RAM.
INFO 2026-06-03 19:47:35 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 2s. Last read position: chr7:75,395,285
INFO 2026-06-03 19:47:35 MarkDuplicates Tracking 407083 as yet unmatched pairs. 32331 records in RAM.
INFO 2026-06-03 19:47:37 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 2s. Last read position: chr7:77,053,106
INFO 2026-06-03 19:47:37 MarkDuplicates Tracking 406108 as yet unmatched pairs. 31354 records in RAM.
INFO 2026-06-03 19:47:40 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 2s. Last read position: chr7:93,926,138
INFO 2026-06-03 19:47:40 MarkDuplicates Tracking 404724 as yet unmatched pairs. 29969 records in RAM.
INFO 2026-06-03 19:47:42 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 2s. Last read position: chr7:99,666,994
INFO 2026-06-03 19:47:42 MarkDuplicates Tracking 403309 as yet unmatched pairs. 28549 records in RAM.
INFO 2026-06-03 19:47:44 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr7:100,805,561
INFO 2026-06-03 19:47:44 MarkDuplicates Tracking 401772 as yet unmatched pairs. 27012 records in RAM.
INFO 2026-06-03 19:47:45 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr7:100,991,457
INFO 2026-06-03 19:47:45 MarkDuplicates Tracking 402000 as yet unmatched pairs. 27238 records in RAM.
INFO 2026-06-03 19:47:47 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr7:100,992,360
INFO 2026-06-03 19:47:47 MarkDuplicates Tracking 403047 as yet unmatched pairs. 28285 records in RAM.
INFO 2026-06-03 19:47:49 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr7:100,992,858
INFO 2026-06-03 19:47:49 MarkDuplicates Tracking 404540 as yet unmatched pairs. 29778 records in RAM.
INFO 2026-06-03 19:47:51 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,161
INFO 2026-06-03 19:47:51 MarkDuplicates Tracking 399892 as yet unmatched pairs. 25130 records in RAM.
INFO 2026-06-03 19:47:52 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,592
INFO 2026-06-03 19:47:52 MarkDuplicates Tracking 400434 as yet unmatched pairs. 25672 records in RAM.
INFO 2026-06-03 19:47:54 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,772
INFO 2026-06-03 19:47:54 MarkDuplicates Tracking 404566 as yet unmatched pairs. 29804 records in RAM.
INFO 2026-06-03 19:47:56 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr7:100,994,136
INFO 2026-06-03 19:47:56 MarkDuplicates Tracking 399063 as yet unmatched pairs. 24301 records in RAM.
INFO 2026-06-03 19:47:57 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr7:100,994,655
INFO 2026-06-03 19:47:57 MarkDuplicates Tracking 399126 as yet unmatched pairs. 24364 records in RAM.
INFO 2026-06-03 19:47:58 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr7:100,994,929
INFO 2026-06-03 19:47:58 MarkDuplicates Tracking 398950 as yet unmatched pairs. 24188 records in RAM.
INFO 2026-06-03 19:47:59 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr7:100,995,220
INFO 2026-06-03 19:47:59 MarkDuplicates Tracking 399294 as yet unmatched pairs. 24532 records in RAM.
INFO 2026-06-03 19:48:01 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr7:100,995,664
INFO 2026-06-03 19:48:01 MarkDuplicates Tracking 399243 as yet unmatched pairs. 24481 records in RAM.
INFO 2026-06-03 19:48:03 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,041
INFO 2026-06-03 19:48:03 MarkDuplicates Tracking 399004 as yet unmatched pairs. 24242 records in RAM.
INFO 2026-06-03 19:48:05 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,280
INFO 2026-06-03 19:48:05 MarkDuplicates Tracking 399391 as yet unmatched pairs. 24629 records in RAM.
INFO 2026-06-03 19:48:07 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 2s. Last read position: chr7:100,996,400
INFO 2026-06-03 19:48:07 MarkDuplicates Tracking 418087 as yet unmatched pairs. 43325 records in RAM.
INFO 2026-06-03 19:48:09 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 2s. Last read position: chr7:100,996,518
INFO 2026-06-03 19:48:09 MarkDuplicates Tracking 398266 as yet unmatched pairs. 23504 records in RAM.
INFO 2026-06-03 19:48:11 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,743
INFO 2026-06-03 19:48:11 MarkDuplicates Tracking 408264 as yet unmatched pairs. 33502 records in RAM.
INFO 2026-06-03 19:48:13 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 2s. Last read position: chr7:100,996,843
INFO 2026-06-03 19:48:13 MarkDuplicates Tracking 413975 as yet unmatched pairs. 39213 records in RAM.
INFO 2026-06-03 19:48:16 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 2s. Last read position: chr7:100,997,030
INFO 2026-06-03 19:48:16 MarkDuplicates Tracking 397611 as yet unmatched pairs. 22849 records in RAM.
INFO 2026-06-03 19:48:18 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 2s. Last read position: chr7:100,997,234
INFO 2026-06-03 19:48:18 MarkDuplicates Tracking 395475 as yet unmatched pairs. 20713 records in RAM.
INFO 2026-06-03 19:48:20 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 2s. Last read position: chr7:100,997,504
INFO 2026-06-03 19:48:20 MarkDuplicates Tracking 408486 as yet unmatched pairs. 33723 records in RAM.
INFO 2026-06-03 19:48:22 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,809
INFO 2026-06-03 19:48:22 MarkDuplicates Tracking 394469 as yet unmatched pairs. 19705 records in RAM.
INFO 2026-06-03 19:48:23 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,928
INFO 2026-06-03 19:48:23 MarkDuplicates Tracking 416338 as yet unmatched pairs. 41574 records in RAM.
INFO 2026-06-03 19:48:25 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,064
INFO 2026-06-03 19:48:25 MarkDuplicates Tracking 394609 as yet unmatched pairs. 19845 records in RAM.
INFO 2026-06-03 19:48:26 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,266
INFO 2026-06-03 19:48:26 MarkDuplicates Tracking 394191 as yet unmatched pairs. 19427 records in RAM.
INFO 2026-06-03 19:48:27 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,458
INFO 2026-06-03 19:48:27 MarkDuplicates Tracking 394170 as yet unmatched pairs. 19406 records in RAM.
INFO 2026-06-03 19:48:28 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,646
INFO 2026-06-03 19:48:28 MarkDuplicates Tracking 417534 as yet unmatched pairs. 42770 records in RAM.
INFO 2026-06-03 19:48:30 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,822
INFO 2026-06-03 19:48:30 MarkDuplicates Tracking 393864 as yet unmatched pairs. 19100 records in RAM.
INFO 2026-06-03 19:48:31 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,010
INFO 2026-06-03 19:48:31 MarkDuplicates Tracking 394310 as yet unmatched pairs. 19546 records in RAM.
INFO 2026-06-03 19:48:34 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 2s. Last read position: chr7:100,999,440
INFO 2026-06-03 19:48:34 MarkDuplicates Tracking 404404 as yet unmatched pairs. 29640 records in RAM.
INFO 2026-06-03 19:48:35 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,694
INFO 2026-06-03 19:48:35 MarkDuplicates Tracking 397041 as yet unmatched pairs. 22277 records in RAM.
INFO 2026-06-03 19:48:37 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,961
INFO 2026-06-03 19:48:37 MarkDuplicates Tracking 398331 as yet unmatched pairs. 23567 records in RAM.
INFO 2026-06-03 19:48:39 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 2s. Last read position: chr7:101,000,168
INFO 2026-06-03 19:48:39 MarkDuplicates Tracking 404806 as yet unmatched pairs. 30042 records in RAM.
INFO 2026-06-03 19:48:42 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 2s. Last read position: chr7:101,000,415
INFO 2026-06-03 19:48:42 MarkDuplicates Tracking 408616 as yet unmatched pairs. 33852 records in RAM.
INFO 2026-06-03 19:48:44 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,662
INFO 2026-06-03 19:48:44 MarkDuplicates Tracking 395871 as yet unmatched pairs. 21107 records in RAM.
INFO 2026-06-03 19:48:45 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,871
INFO 2026-06-03 19:48:45 MarkDuplicates Tracking 400091 as yet unmatched pairs. 25326 records in RAM.
INFO 2026-06-03 19:48:48 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 2s. Last read position: chr7:101,001,048
INFO 2026-06-03 19:48:48 MarkDuplicates Tracking 390283 as yet unmatched pairs. 15518 records in RAM.
INFO 2026-06-03 19:48:49 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,316
INFO 2026-06-03 19:48:49 MarkDuplicates Tracking 412061 as yet unmatched pairs. 37296 records in RAM.
INFO 2026-06-03 19:48:51 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,436
INFO 2026-06-03 19:48:51 MarkDuplicates Tracking 388509 as yet unmatched pairs. 13744 records in RAM.
INFO 2026-06-03 19:48:52 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,556
INFO 2026-06-03 19:48:52 MarkDuplicates Tracking 388351 as yet unmatched pairs. 13586 records in RAM.
INFO 2026-06-03 19:48:53 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,778
INFO 2026-06-03 19:48:53 MarkDuplicates Tracking 388521 as yet unmatched pairs. 13756 records in RAM.
INFO 2026-06-03 19:48:54 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 0s. Last read position: chr7:101,002,055
INFO 2026-06-03 19:48:54 MarkDuplicates Tracking 388417 as yet unmatched pairs. 13652 records in RAM.
INFO 2026-06-03 19:48:55 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,345
INFO 2026-06-03 19:48:55 MarkDuplicates Tracking 392095 as yet unmatched pairs. 17330 records in RAM.
INFO 2026-06-03 19:48:57 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,577
INFO 2026-06-03 19:48:57 MarkDuplicates Tracking 389812 as yet unmatched pairs. 15047 records in RAM.
INFO 2026-06-03 19:48:58 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr7:101,003,173
INFO 2026-06-03 19:48:58 MarkDuplicates Tracking 386354 as yet unmatched pairs. 11589 records in RAM.
INFO 2026-06-03 19:49:00 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr7:101,003,741
INFO 2026-06-03 19:49:00 MarkDuplicates Tracking 386030 as yet unmatched pairs. 11265 records in RAM.
INFO 2026-06-03 19:49:01 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr7:101,004,046
INFO 2026-06-03 19:49:01 MarkDuplicates Tracking 384815 as yet unmatched pairs. 10050 records in RAM.
INFO 2026-06-03 19:49:03 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr7:101,008,737
INFO 2026-06-03 19:49:03 MarkDuplicates Tracking 385281 as yet unmatched pairs. 10516 records in RAM.
INFO 2026-06-03 19:49:05 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr7:102,640,231
INFO 2026-06-03 19:49:05 MarkDuplicates Tracking 383208 as yet unmatched pairs. 8442 records in RAM.
INFO 2026-06-03 19:49:07 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 2s. Last read position: chr7:108,565,848
INFO 2026-06-03 19:49:07 MarkDuplicates Tracking 382070 as yet unmatched pairs. 7303 records in RAM.
INFO 2026-06-03 19:49:10 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 2s. Last read position: chr7:128,846,758
INFO 2026-06-03 19:49:10 MarkDuplicates Tracking 380733 as yet unmatched pairs. 5962 records in RAM.
INFO 2026-06-03 19:49:11 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr7:139,572,962
INFO 2026-06-03 19:49:11 MarkDuplicates Tracking 379608 as yet unmatched pairs. 4836 records in RAM.
INFO 2026-06-03 19:49:13 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr7:144,282,267
INFO 2026-06-03 19:49:13 MarkDuplicates Tracking 378326 as yet unmatched pairs. 3554 records in RAM.
INFO 2026-06-03 19:49:14 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr7:150,369,765
INFO 2026-06-03 19:49:14 MarkDuplicates Tracking 377465 as yet unmatched pairs. 2691 records in RAM.
INFO 2026-06-03 19:49:16 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr7:152,263,063
INFO 2026-06-03 19:49:16 MarkDuplicates Tracking 375788 as yet unmatched pairs. 1012 records in RAM.
INFO 2026-06-03 19:49:18 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr8:9,556,443
INFO 2026-06-03 19:49:18 MarkDuplicates Tracking 374288 as yet unmatched pairs. 20159 records in RAM.
INFO 2026-06-03 19:49:19 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr8:22,572,400
INFO 2026-06-03 19:49:19 MarkDuplicates Tracking 372866 as yet unmatched pairs. 18735 records in RAM.
INFO 2026-06-03 19:49:21 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr8:29,092,775
INFO 2026-06-03 19:49:21 MarkDuplicates Tracking 371505 as yet unmatched pairs. 17371 records in RAM.
INFO 2026-06-03 19:49:23 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr8:38,110,401
INFO 2026-06-03 19:49:23 MarkDuplicates Tracking 369967 as yet unmatched pairs. 15829 records in RAM.
INFO 2026-06-03 19:49:25 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr8:47,599,159
INFO 2026-06-03 19:49:25 MarkDuplicates Tracking 368915 as yet unmatched pairs. 14776 records in RAM.
INFO 2026-06-03 19:49:26 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr8:70,131,891
INFO 2026-06-03 19:49:26 MarkDuplicates Tracking 367776 as yet unmatched pairs. 13633 records in RAM.
INFO 2026-06-03 19:49:28 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr8:94,865,457
INFO 2026-06-03 19:49:28 MarkDuplicates Tracking 366346 as yet unmatched pairs. 12202 records in RAM.
INFO 2026-06-03 19:49:30 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr8:116,645,086
INFO 2026-06-03 19:49:30 MarkDuplicates Tracking 365258 as yet unmatched pairs. 11112 records in RAM.
INFO 2026-06-03 19:49:32 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 2s. Last read position: chr8:133,259,205
INFO 2026-06-03 19:49:32 MarkDuplicates Tracking 364047 as yet unmatched pairs. 9879 records in RAM.
INFO 2026-06-03 19:49:34 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 2s. Last read position: chr8:143,728,498
INFO 2026-06-03 19:49:34 MarkDuplicates Tracking 362527 as yet unmatched pairs. 8352 records in RAM.
INFO 2026-06-03 19:49:36 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,877
INFO 2026-06-03 19:49:36 MarkDuplicates Tracking 361459 as yet unmatched pairs. 7272 records in RAM.
INFO 2026-06-03 19:49:37 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,053
INFO 2026-06-03 19:49:37 MarkDuplicates Tracking 361283 as yet unmatched pairs. 7096 records in RAM.
INFO 2026-06-03 19:49:38 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,400
INFO 2026-06-03 19:49:38 MarkDuplicates Tracking 360208 as yet unmatched pairs. 6021 records in RAM.
INFO 2026-06-03 19:49:40 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr8:143,867,772
INFO 2026-06-03 19:49:40 MarkDuplicates Tracking 360073 as yet unmatched pairs. 5886 records in RAM.
INFO 2026-06-03 19:49:41 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr8:143,924,547
INFO 2026-06-03 19:49:41 MarkDuplicates Tracking 357932 as yet unmatched pairs. 3745 records in RAM.
INFO 2026-06-03 19:49:42 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr8:144,318,304
INFO 2026-06-03 19:49:42 MarkDuplicates Tracking 355849 as yet unmatched pairs. 1660 records in RAM.
INFO 2026-06-03 19:49:44 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr9:730,170
INFO 2026-06-03 19:49:44 MarkDuplicates Tracking 354091 as yet unmatched pairs. 22646 records in RAM.
INFO 2026-06-03 19:49:47 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 2s. Last read position: chr9:20,622,288
INFO 2026-06-03 19:49:47 MarkDuplicates Tracking 352617 as yet unmatched pairs. 21170 records in RAM.
INFO 2026-06-03 19:49:49 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 2s. Last read position: chr9:35,377,664
INFO 2026-06-03 19:49:49 MarkDuplicates Tracking 351255 as yet unmatched pairs. 19806 records in RAM.
INFO 2026-06-03 19:49:51 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 1s. Last read position: chr9:64,842,206
INFO 2026-06-03 19:49:51 MarkDuplicates Tracking 350011 as yet unmatched pairs. 18529 records in RAM.
INFO 2026-06-03 19:49:52 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr9:83,971,293
INFO 2026-06-03 19:49:52 MarkDuplicates Tracking 349006 as yet unmatched pairs. 17523 records in RAM.
INFO 2026-06-03 19:49:54 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 1s. Last read position: chr9:93,292,788
INFO 2026-06-03 19:49:54 MarkDuplicates Tracking 347748 as yet unmatched pairs. 16262 records in RAM.
INFO 2026-06-03 19:49:56 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr9:101,390,837
INFO 2026-06-03 19:49:56 MarkDuplicates Tracking 346104 as yet unmatched pairs. 14617 records in RAM.
INFO 2026-06-03 19:49:57 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr9:113,193,441
INFO 2026-06-03 19:49:57 MarkDuplicates Tracking 344500 as yet unmatched pairs. 13012 records in RAM.
INFO 2026-06-03 19:49:59 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 1s. Last read position: chr9:121,759,980
INFO 2026-06-03 19:49:59 MarkDuplicates Tracking 343125 as yet unmatched pairs. 11636 records in RAM.
INFO 2026-06-03 19:50:01 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 1s. Last read position: chr9:127,867,963
INFO 2026-06-03 19:50:01 MarkDuplicates Tracking 342362 as yet unmatched pairs. 10865 records in RAM.
INFO 2026-06-03 19:50:03 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 1s. Last read position: chr9:128,633,220
INFO 2026-06-03 19:50:03 MarkDuplicates Tracking 340376 as yet unmatched pairs. 8878 records in RAM.
INFO 2026-06-03 19:50:04 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 1s. Last read position: chr9:131,066,995
INFO 2026-06-03 19:50:04 MarkDuplicates Tracking 338745 as yet unmatched pairs. 7246 records in RAM.
INFO 2026-06-03 19:50:06 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 1s. Last read position: chr9:133,797,800
INFO 2026-06-03 19:50:06 MarkDuplicates Tracking 337412 as yet unmatched pairs. 5910 records in RAM.
INFO 2026-06-03 19:50:08 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 2s. Last read position: chr9:136,476,871
INFO 2026-06-03 19:50:08 MarkDuplicates Tracking 336706 as yet unmatched pairs. 5200 records in RAM.
INFO 2026-06-03 19:50:10 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 2s. Last read position: chr9:137,015,752
INFO 2026-06-03 19:50:10 MarkDuplicates Tracking 333954 as yet unmatched pairs. 2448 records in RAM.
INFO 2026-06-03 19:50:12 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 1s. Last read position: chr9:137,551,929
INFO 2026-06-03 19:50:12 MarkDuplicates Tracking 331911 as yet unmatched pairs. 405 records in RAM.
INFO 2026-06-03 19:50:14 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 1s. Last read position: chr10:12,374,611
INFO 2026-06-03 19:50:14 MarkDuplicates Tracking 330543 as yet unmatched pairs. 15128 records in RAM.
INFO 2026-06-03 19:50:15 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 1s. Last read position: chr10:28,595,853
INFO 2026-06-03 19:50:15 MarkDuplicates Tracking 329416 as yet unmatched pairs. 13996 records in RAM.
INFO 2026-06-03 19:50:17 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 1s. Last read position: chr10:43,387,054
INFO 2026-06-03 19:50:17 MarkDuplicates Tracking 328368 as yet unmatched pairs. 12946 records in RAM.
INFO 2026-06-03 19:50:18 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 1s. Last read position: chr10:50,068,162
INFO 2026-06-03 19:50:18 MarkDuplicates Tracking 327501 as yet unmatched pairs. 12079 records in RAM.
INFO 2026-06-03 19:50:20 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 1s. Last read position: chr10:70,153,850
INFO 2026-06-03 19:50:20 MarkDuplicates Tracking 325883 as yet unmatched pairs. 10460 records in RAM.
INFO 2026-06-03 19:50:22 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 1s. Last read position: chr10:75,211,140
INFO 2026-06-03 19:50:22 MarkDuplicates Tracking 324517 as yet unmatched pairs. 9089 records in RAM.
INFO 2026-06-03 19:50:23 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 1s. Last read position: chr10:86,943,397
INFO 2026-06-03 19:50:23 MarkDuplicates Tracking 323227 as yet unmatched pairs. 7798 records in RAM.
INFO 2026-06-03 19:50:24 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 1s. Last read position: chr10:95,271,716
INFO 2026-06-03 19:50:24 MarkDuplicates Tracking 322235 as yet unmatched pairs. 6806 records in RAM.
INFO 2026-06-03 19:50:26 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 1s. Last read position: chr10:100,984,737
INFO 2026-06-03 19:50:26 MarkDuplicates Tracking 321235 as yet unmatched pairs. 5805 records in RAM.
INFO 2026-06-03 19:50:28 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 1s. Last read position: chr10:103,661,018
INFO 2026-06-03 19:50:28 MarkDuplicates Tracking 319044 as yet unmatched pairs. 3614 records in RAM.
INFO 2026-06-03 19:50:30 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 1s. Last read position: chr10:116,944,965
INFO 2026-06-03 19:50:30 MarkDuplicates Tracking 318001 as yet unmatched pairs. 2567 records in RAM.
INFO 2026-06-03 19:50:31 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 1s. Last read position: chr10:124,992,785
INFO 2026-06-03 19:50:31 MarkDuplicates Tracking 316591 as yet unmatched pairs. 1154 records in RAM.
INFO 2026-06-03 19:50:33 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 2s. Last read position: chr11:314,943
INFO 2026-06-03 19:50:33 MarkDuplicates Tracking 315580 as yet unmatched pairs. 40109 records in RAM.
INFO 2026-06-03 19:50:35 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 1s. Last read position: chr11:618,845
INFO 2026-06-03 19:50:35 MarkDuplicates Tracking 314579 as yet unmatched pairs. 39108 records in RAM.
INFO 2026-06-03 19:50:37 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr11:1,075,773
INFO 2026-06-03 19:50:37 MarkDuplicates Tracking 314239 as yet unmatched pairs. 38765 records in RAM.
INFO 2026-06-03 19:50:39 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 2s. Last read position: chr11:1,085,826
INFO 2026-06-03 19:50:39 MarkDuplicates Tracking 311568 as yet unmatched pairs. 36094 records in RAM.
INFO 2026-06-03 19:50:41 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr11:1,098,949
INFO 2026-06-03 19:50:41 MarkDuplicates Tracking 309208 as yet unmatched pairs. 33734 records in RAM.
INFO 2026-06-03 19:50:43 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 2s. Last read position: chr11:1,243,068
INFO 2026-06-03 19:50:43 MarkDuplicates Tracking 308374 as yet unmatched pairs. 32900 records in RAM.
INFO 2026-06-03 19:50:44 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 1s. Last read position: chr11:1,244,379
INFO 2026-06-03 19:50:44 MarkDuplicates Tracking 309526 as yet unmatched pairs. 34052 records in RAM.
INFO 2026-06-03 19:50:46 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr11:1,245,252
INFO 2026-06-03 19:50:46 MarkDuplicates Tracking 308750 as yet unmatched pairs. 33276 records in RAM.
INFO 2026-06-03 19:50:47 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 1s. Last read position: chr11:1,247,003
INFO 2026-06-03 19:50:47 MarkDuplicates Tracking 307969 as yet unmatched pairs. 32495 records in RAM.
INFO 2026-06-03 19:50:49 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr11:1,248,264
INFO 2026-06-03 19:50:49 MarkDuplicates Tracking 307184 as yet unmatched pairs. 31710 records in RAM.
INFO 2026-06-03 19:50:50 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr11:1,249,463
INFO 2026-06-03 19:50:50 MarkDuplicates Tracking 306940 as yet unmatched pairs. 31466 records in RAM.
INFO 2026-06-03 19:50:52 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr11:1,250,918
INFO 2026-06-03 19:50:52 MarkDuplicates Tracking 305395 as yet unmatched pairs. 29921 records in RAM.
INFO 2026-06-03 19:50:53 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr11:2,929,108
INFO 2026-06-03 19:50:53 MarkDuplicates Tracking 303472 as yet unmatched pairs. 27992 records in RAM.
INFO 2026-06-03 19:50:55 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr11:8,707,102
INFO 2026-06-03 19:50:55 MarkDuplicates Tracking 301872 as yet unmatched pairs. 26391 records in RAM.
INFO 2026-06-03 19:50:57 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr11:17,074,415
INFO 2026-06-03 19:50:57 MarkDuplicates Tracking 300762 as yet unmatched pairs. 25276 records in RAM.
INFO 2026-06-03 19:50:59 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr11:43,443,366
INFO 2026-06-03 19:50:59 MarkDuplicates Tracking 299317 as yet unmatched pairs. 23830 records in RAM.
INFO 2026-06-03 19:51:01 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr11:46,899,882
INFO 2026-06-03 19:51:01 MarkDuplicates Tracking 297969 as yet unmatched pairs. 22479 records in RAM.
INFO 2026-06-03 19:51:02 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr11:57,796,833
INFO 2026-06-03 19:51:02 MarkDuplicates Tracking 297243 as yet unmatched pairs. 21752 records in RAM.
INFO 2026-06-03 19:51:05 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 2s. Last read position: chr11:61,967,320
INFO 2026-06-03 19:51:05 MarkDuplicates Tracking 295326 as yet unmatched pairs. 19810 records in RAM.
INFO 2026-06-03 19:51:07 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 2s. Last read position: chr11:62,593,916
INFO 2026-06-03 19:51:07 MarkDuplicates Tracking 294096 as yet unmatched pairs. 18579 records in RAM.
INFO 2026-06-03 19:51:09 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr11:64,258,941
INFO 2026-06-03 19:51:09 MarkDuplicates Tracking 292290 as yet unmatched pairs. 16772 records in RAM.
INFO 2026-06-03 19:51:10 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr11:65,120,759
INFO 2026-06-03 19:51:10 MarkDuplicates Tracking 290956 as yet unmatched pairs. 15438 records in RAM.
INFO 2026-06-03 19:51:12 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr11:65,654,413
INFO 2026-06-03 19:51:12 MarkDuplicates Tracking 289242 as yet unmatched pairs. 13704 records in RAM.
INFO 2026-06-03 19:51:14 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr11:66,643,564
INFO 2026-06-03 19:51:14 MarkDuplicates Tracking 287498 as yet unmatched pairs. 11960 records in RAM.
INFO 2026-06-03 19:51:15 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr11:68,045,008
INFO 2026-06-03 19:51:15 MarkDuplicates Tracking 286081 as yet unmatched pairs. 10542 records in RAM.
INFO 2026-06-03 19:51:17 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr11:70,820,647
INFO 2026-06-03 19:51:17 MarkDuplicates Tracking 284700 as yet unmatched pairs. 9160 records in RAM.
INFO 2026-06-03 19:51:18 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr11:73,311,058
INFO 2026-06-03 19:51:18 MarkDuplicates Tracking 283264 as yet unmatched pairs. 7724 records in RAM.
INFO 2026-06-03 19:51:20 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr11:83,157,510
INFO 2026-06-03 19:51:20 MarkDuplicates Tracking 281821 as yet unmatched pairs. 6281 records in RAM.
INFO 2026-06-03 19:51:22 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr11:102,205,911
INFO 2026-06-03 19:51:22 MarkDuplicates Tracking 280549 as yet unmatched pairs. 5008 records in RAM.
INFO 2026-06-03 19:51:23 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr11:117,207,965
INFO 2026-06-03 19:51:23 MarkDuplicates Tracking 279200 as yet unmatched pairs. 3657 records in RAM.
INFO 2026-06-03 19:51:24 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr11:119,056,092
INFO 2026-06-03 19:51:24 MarkDuplicates Tracking 277888 as yet unmatched pairs. 2343 records in RAM.
INFO 2026-06-03 19:51:26 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr11:126,271,525
INFO 2026-06-03 19:51:26 MarkDuplicates Tracking 276493 as yet unmatched pairs. 946 records in RAM.
INFO 2026-06-03 19:51:28 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr12:754,065
INFO 2026-06-03 19:51:28 MarkDuplicates Tracking 275432 as yet unmatched pairs. 26625 records in RAM.
INFO 2026-06-03 19:51:29 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr12:6,374,705
INFO 2026-06-03 19:51:29 MarkDuplicates Tracking 274669 as yet unmatched pairs. 25859 records in RAM.
INFO 2026-06-03 19:51:31 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr12:6,970,939
INFO 2026-06-03 19:51:31 MarkDuplicates Tracking 272468 as yet unmatched pairs. 23657 records in RAM.
INFO 2026-06-03 19:51:33 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr12:12,721,035
INFO 2026-06-03 19:51:33 MarkDuplicates Tracking 271051 as yet unmatched pairs. 22239 records in RAM.
INFO 2026-06-03 19:51:35 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr12:31,103,769
INFO 2026-06-03 19:51:35 MarkDuplicates Tracking 269814 as yet unmatched pairs. 21001 records in RAM.
INFO 2026-06-03 19:51:36 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr12:48,938,971
INFO 2026-06-03 19:51:36 MarkDuplicates Tracking 268535 as yet unmatched pairs. 19720 records in RAM.
INFO 2026-06-03 19:51:38 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr12:49,642,243
INFO 2026-06-03 19:51:38 MarkDuplicates Tracking 267367 as yet unmatched pairs. 18551 records in RAM.
INFO 2026-06-03 19:51:40 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 2s. Last read position: chr12:52,904,801
INFO 2026-06-03 19:51:40 MarkDuplicates Tracking 267346 as yet unmatched pairs. 18529 records in RAM.
INFO 2026-06-03 19:51:42 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 2s. Last read position: chr12:54,183,740
INFO 2026-06-03 19:51:42 MarkDuplicates Tracking 265020 as yet unmatched pairs. 16202 records in RAM.
INFO 2026-06-03 19:51:44 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr12:56,163,753
INFO 2026-06-03 19:51:44 MarkDuplicates Tracking 263989 as yet unmatched pairs. 15171 records in RAM.
INFO 2026-06-03 19:51:46 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr12:57,096,581
INFO 2026-06-03 19:51:46 MarkDuplicates Tracking 263030 as yet unmatched pairs. 14212 records in RAM.
INFO 2026-06-03 19:51:48 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr12:57,474,872
INFO 2026-06-03 19:51:48 MarkDuplicates Tracking 261364 as yet unmatched pairs. 12545 records in RAM.
INFO 2026-06-03 19:52:51 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 63s. Last read position: chr12:68,731,707
INFO 2026-06-03 19:52:51 MarkDuplicates Tracking 260200 as yet unmatched pairs. 11377 records in RAM.
INFO 2026-06-03 19:52:53 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr12:93,395,487
INFO 2026-06-03 19:52:53 MarkDuplicates Tracking 258951 as yet unmatched pairs. 10124 records in RAM.
INFO 2026-06-03 19:52:54 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr12:108,526,443
INFO 2026-06-03 19:52:54 MarkDuplicates Tracking 257588 as yet unmatched pairs. 8746 records in RAM.
INFO 2026-06-03 19:52:56 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr12:112,265,956
INFO 2026-06-03 19:52:56 MarkDuplicates Tracking 256203 as yet unmatched pairs. 7346 records in RAM.
INFO 2026-06-03 19:52:57 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr12:120,178,852
INFO 2026-06-03 19:52:57 MarkDuplicates Tracking 254785 as yet unmatched pairs. 5925 records in RAM.
INFO 2026-06-03 19:52:59 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr12:122,133,424
INFO 2026-06-03 19:52:59 MarkDuplicates Tracking 255531 as yet unmatched pairs. 6670 records in RAM.
INFO 2026-06-03 19:53:01 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr12:124,336,758
INFO 2026-06-03 19:53:01 MarkDuplicates Tracking 252094 as yet unmatched pairs. 3231 records in RAM.
INFO 2026-06-03 19:53:02 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr12:132,066,880
INFO 2026-06-03 19:53:02 MarkDuplicates Tracking 250409 as yet unmatched pairs. 1545 records in RAM.
INFO 2026-06-03 19:53:04 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr13:20,189,225
INFO 2026-06-03 19:53:04 MarkDuplicates Tracking 248652 as yet unmatched pairs. 7317 records in RAM.
INFO 2026-06-03 19:53:06 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 2s. Last read position: chr13:33,185,860
INFO 2026-06-03 19:53:06 MarkDuplicates Tracking 247455 as yet unmatched pairs. 6117 records in RAM.
INFO 2026-06-03 19:53:08 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr13:49,196,925
INFO 2026-06-03 19:53:08 MarkDuplicates Tracking 246132 as yet unmatched pairs. 4793 records in RAM.
INFO 2026-06-03 19:53:09 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr13:77,899,960
INFO 2026-06-03 19:53:09 MarkDuplicates Tracking 244698 as yet unmatched pairs. 3356 records in RAM.
INFO 2026-06-03 19:53:11 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr13:110,183,252
INFO 2026-06-03 19:53:11 MarkDuplicates Tracking 243364 as yet unmatched pairs. 2013 records in RAM.
INFO 2026-06-03 19:53:12 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr13:113,319,605
INFO 2026-06-03 19:53:12 MarkDuplicates Tracking 241667 as yet unmatched pairs. 314 records in RAM.
INFO 2026-06-03 19:53:14 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr14:22,845,991
INFO 2026-06-03 19:53:14 MarkDuplicates Tracking 240518 as yet unmatched pairs. 15800 records in RAM.
INFO 2026-06-03 19:53:15 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr14:24,210,457
INFO 2026-06-03 19:53:15 MarkDuplicates Tracking 238669 as yet unmatched pairs. 13950 records in RAM.
INFO 2026-06-03 19:53:17 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr14:39,181,105
INFO 2026-06-03 19:53:17 MarkDuplicates Tracking 237703 as yet unmatched pairs. 12981 records in RAM.
INFO 2026-06-03 19:53:18 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr14:55,145,137
INFO 2026-06-03 19:53:18 MarkDuplicates Tracking 236380 as yet unmatched pairs. 11654 records in RAM.
INFO 2026-06-03 19:53:20 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr14:64,932,202
INFO 2026-06-03 19:53:20 MarkDuplicates Tracking 234997 as yet unmatched pairs. 10270 records in RAM.
INFO 2026-06-03 19:53:21 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr14:73,217,233
INFO 2026-06-03 19:53:21 MarkDuplicates Tracking 233833 as yet unmatched pairs. 9105 records in RAM.
INFO 2026-06-03 19:53:23 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr14:76,082,299
INFO 2026-06-03 19:53:23 MarkDuplicates Tracking 232300 as yet unmatched pairs. 7572 records in RAM.
INFO 2026-06-03 19:53:24 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr14:93,294,758
INFO 2026-06-03 19:53:24 MarkDuplicates Tracking 230897 as yet unmatched pairs. 6156 records in RAM.
INFO 2026-06-03 19:53:26 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr14:102,082,158
INFO 2026-06-03 19:53:26 MarkDuplicates Tracking 229638 as yet unmatched pairs. 4868 records in RAM.
INFO 2026-06-03 19:53:27 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr14:104,152,266
INFO 2026-06-03 19:53:27 MarkDuplicates Tracking 227778 as yet unmatched pairs. 3008 records in RAM.
INFO 2026-06-03 19:53:29 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr14:105,460,774
INFO 2026-06-03 19:53:29 MarkDuplicates Tracking 226150 as yet unmatched pairs. 1377 records in RAM.
INFO 2026-06-03 19:53:31 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,190
INFO 2026-06-03 19:53:31 MarkDuplicates Tracking 224945 as yet unmatched pairs. 171 records in RAM.
INFO 2026-06-03 19:53:32 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr15:31,372,200
INFO 2026-06-03 19:53:32 MarkDuplicates Tracking 224028 as yet unmatched pairs. 14114 records in RAM.
INFO 2026-06-03 19:53:34 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr15:40,353,257
INFO 2026-06-03 19:53:34 MarkDuplicates Tracking 224827 as yet unmatched pairs. 14912 records in RAM.
INFO 2026-06-03 19:53:35 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr15:41,900,660
INFO 2026-06-03 19:53:35 MarkDuplicates Tracking 221482 as yet unmatched pairs. 11559 records in RAM.
INFO 2026-06-03 19:53:37 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr15:44,566,221
INFO 2026-06-03 19:53:37 MarkDuplicates Tracking 220300 as yet unmatched pairs. 10376 records in RAM.
INFO 2026-06-03 19:53:39 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr15:56,443,676
INFO 2026-06-03 19:53:39 MarkDuplicates Tracking 218833 as yet unmatched pairs. 8906 records in RAM.
INFO 2026-06-03 19:53:41 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr15:63,677,927
INFO 2026-06-03 19:53:41 MarkDuplicates Tracking 217495 as yet unmatched pairs. 7568 records in RAM.
INFO 2026-06-03 19:53:42 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr15:70,666,947
INFO 2026-06-03 19:53:42 MarkDuplicates Tracking 215912 as yet unmatched pairs. 5984 records in RAM.
INFO 2026-06-03 19:53:44 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr15:74,923,657
INFO 2026-06-03 19:53:44 MarkDuplicates Tracking 214772 as yet unmatched pairs. 4843 records in RAM.
INFO 2026-06-03 19:53:45 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr15:78,965,700
INFO 2026-06-03 19:53:45 MarkDuplicates Tracking 213156 as yet unmatched pairs. 3226 records in RAM.
INFO 2026-06-03 19:53:47 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr15:85,244,836
INFO 2026-06-03 19:53:47 MarkDuplicates Tracking 212085 as yet unmatched pairs. 2154 records in RAM.
INFO 2026-06-03 19:53:48 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr15:90,910,273
INFO 2026-06-03 19:53:48 MarkDuplicates Tracking 210874 as yet unmatched pairs. 942 records in RAM.
INFO 2026-06-03 19:53:50 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr16:371,920
INFO 2026-06-03 19:53:50 MarkDuplicates Tracking 209639 as yet unmatched pairs. 31808 records in RAM.
INFO 2026-06-03 19:53:52 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr16:1,446,517
INFO 2026-06-03 19:53:52 MarkDuplicates Tracking 208153 as yet unmatched pairs. 30319 records in RAM.
INFO 2026-06-03 19:53:53 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr16:2,108,480
INFO 2026-06-03 19:53:53 MarkDuplicates Tracking 206042 as yet unmatched pairs. 28208 records in RAM.
INFO 2026-06-03 19:53:55 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr16:2,765,021
INFO 2026-06-03 19:53:55 MarkDuplicates Tracking 205174 as yet unmatched pairs. 27340 records in RAM.
INFO 2026-06-03 19:53:56 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr16:3,727,899
INFO 2026-06-03 19:53:56 MarkDuplicates Tracking 203400 as yet unmatched pairs. 25564 records in RAM.
INFO 2026-06-03 19:53:58 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr16:11,060,963
INFO 2026-06-03 19:53:58 MarkDuplicates Tracking 201602 as yet unmatched pairs. 23763 records in RAM.
INFO 2026-06-03 19:53:59 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr16:15,006,572
INFO 2026-06-03 19:53:59 MarkDuplicates Tracking 200922 as yet unmatched pairs. 23081 records in RAM.
INFO 2026-06-03 19:54:01 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr16:16,350,409
INFO 2026-06-03 19:54:01 MarkDuplicates Tracking 200110 as yet unmatched pairs. 22269 records in RAM.
INFO 2026-06-03 19:54:02 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr16:18,571,278
INFO 2026-06-03 19:54:02 MarkDuplicates Tracking 199419 as yet unmatched pairs. 21577 records in RAM.
INFO 2026-06-03 19:54:04 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr16:21,404,782
INFO 2026-06-03 19:54:04 MarkDuplicates Tracking 199893 as yet unmatched pairs. 22051 records in RAM.
INFO 2026-06-03 19:54:05 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr16:21,836,460
INFO 2026-06-03 19:54:05 MarkDuplicates Tracking 198303 as yet unmatched pairs. 20458 records in RAM.
INFO 2026-06-03 19:54:06 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr16:22,533,777
INFO 2026-06-03 19:54:06 MarkDuplicates Tracking 198123 as yet unmatched pairs. 20278 records in RAM.
INFO 2026-06-03 19:54:08 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr16:23,623,006
INFO 2026-06-03 19:54:08 MarkDuplicates Tracking 197552 as yet unmatched pairs. 19707 records in RAM.
INFO 2026-06-03 19:54:09 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr16:28,496,422
INFO 2026-06-03 19:54:09 MarkDuplicates Tracking 196427 as yet unmatched pairs. 18579 records in RAM.
INFO 2026-06-03 19:54:10 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr16:29,381,828
INFO 2026-06-03 19:54:10 MarkDuplicates Tracking 195206 as yet unmatched pairs. 17358 records in RAM.
INFO 2026-06-03 19:54:12 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr16:29,499,313
INFO 2026-06-03 19:54:12 MarkDuplicates Tracking 194928 as yet unmatched pairs. 17080 records in RAM.
INFO 2026-06-03 19:54:13 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr16:29,991,070
INFO 2026-06-03 19:54:13 MarkDuplicates Tracking 193390 as yet unmatched pairs. 15542 records in RAM.
INFO 2026-06-03 19:54:14 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr16:30,245,459
INFO 2026-06-03 19:54:14 MarkDuplicates Tracking 192419 as yet unmatched pairs. 14571 records in RAM.
INFO 2026-06-03 19:54:16 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr16:30,756,706
INFO 2026-06-03 19:54:16 MarkDuplicates Tracking 191202 as yet unmatched pairs. 13349 records in RAM.
INFO 2026-06-03 19:54:17 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr16:46,691,008
INFO 2026-06-03 19:54:17 MarkDuplicates Tracking 189777 as yet unmatched pairs. 11923 records in RAM.
INFO 2026-06-03 19:54:19 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 2s. Last read position: chr16:57,059,497
INFO 2026-06-03 19:54:19 MarkDuplicates Tracking 188515 as yet unmatched pairs. 10656 records in RAM.
INFO 2026-06-03 19:54:21 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr16:67,195,822
INFO 2026-06-03 19:54:21 MarkDuplicates Tracking 187205 as yet unmatched pairs. 9340 records in RAM.
INFO 2026-06-03 19:54:22 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr16:68,829,679
INFO 2026-06-03 19:54:22 MarkDuplicates Tracking 185856 as yet unmatched pairs. 7991 records in RAM.
INFO 2026-06-03 19:54:24 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr16:71,649,984
INFO 2026-06-03 19:54:24 MarkDuplicates Tracking 184155 as yet unmatched pairs. 6290 records in RAM.
INFO 2026-06-03 19:54:26 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr16:79,598,898
INFO 2026-06-03 19:54:26 MarkDuplicates Tracking 182720 as yet unmatched pairs. 4852 records in RAM.
INFO 2026-06-03 19:54:27 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr16:87,602,535
INFO 2026-06-03 19:54:27 MarkDuplicates Tracking 181058 as yet unmatched pairs. 3183 records in RAM.
INFO 2026-06-03 19:54:30 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 2s. Last read position: chr16:89,280,867
INFO 2026-06-03 19:54:30 MarkDuplicates Tracking 179633 as yet unmatched pairs. 1751 records in RAM.
INFO 2026-06-03 19:54:32 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 2s. Last read position: chr17:1,013,113
INFO 2026-06-03 19:54:32 MarkDuplicates Tracking 177831 as yet unmatched pairs. 39339 records in RAM.
INFO 2026-06-03 19:54:33 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr17:2,387,057
INFO 2026-06-03 19:54:33 MarkDuplicates Tracking 176397 as yet unmatched pairs. 37904 records in RAM.
INFO 2026-06-03 19:54:35 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr17:4,720,463
INFO 2026-06-03 19:54:35 MarkDuplicates Tracking 174916 as yet unmatched pairs. 36422 records in RAM.
INFO 2026-06-03 19:54:36 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr17:7,221,294
INFO 2026-06-03 19:54:36 MarkDuplicates Tracking 173548 as yet unmatched pairs. 35054 records in RAM.
INFO 2026-06-03 19:54:38 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr17:7,513,977
INFO 2026-06-03 19:54:38 MarkDuplicates Tracking 172553 as yet unmatched pairs. 34058 records in RAM.
INFO 2026-06-03 19:54:39 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr17:9,022,326
INFO 2026-06-03 19:54:39 MarkDuplicates Tracking 170888 as yet unmatched pairs. 32391 records in RAM.
INFO 2026-06-03 19:54:41 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr17:17,793,184
INFO 2026-06-03 19:54:41 MarkDuplicates Tracking 169487 as yet unmatched pairs. 30987 records in RAM.
INFO 2026-06-03 19:54:42 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr17:21,198,788
INFO 2026-06-03 19:54:42 MarkDuplicates Tracking 168183 as yet unmatched pairs. 29682 records in RAM.
INFO 2026-06-03 19:54:44 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr17:29,166,299
INFO 2026-06-03 19:54:44 MarkDuplicates Tracking 167243 as yet unmatched pairs. 28741 records in RAM.
INFO 2026-06-03 19:54:46 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr17:35,710,262
INFO 2026-06-03 19:54:46 MarkDuplicates Tracking 165798 as yet unmatched pairs. 27295 records in RAM.
INFO 2026-06-03 19:54:47 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr17:38,463,364
INFO 2026-06-03 19:54:47 MarkDuplicates Tracking 164785 as yet unmatched pairs. 26281 records in RAM.
INFO 2026-06-03 19:54:49 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr17:39,716,537
INFO 2026-06-03 19:54:49 MarkDuplicates Tracking 164520 as yet unmatched pairs. 26015 records in RAM.
INFO 2026-06-03 19:54:50 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr17:40,878,145
INFO 2026-06-03 19:54:50 MarkDuplicates Tracking 162335 as yet unmatched pairs. 23830 records in RAM.
INFO 2026-06-03 19:54:52 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr17:42,793,638
INFO 2026-06-03 19:54:52 MarkDuplicates Tracking 160403 as yet unmatched pairs. 21898 records in RAM.
INFO 2026-06-03 19:54:54 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 2s. Last read position: chr17:45,136,697
INFO 2026-06-03 19:54:54 MarkDuplicates Tracking 159048 as yet unmatched pairs. 20541 records in RAM.
INFO 2026-06-03 19:54:56 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr17:47,676,418
INFO 2026-06-03 19:54:56 MarkDuplicates Tracking 157986 as yet unmatched pairs. 19479 records in RAM.
INFO 2026-06-03 19:54:57 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,419
INFO 2026-06-03 19:54:57 MarkDuplicates Tracking 156596 as yet unmatched pairs. 18088 records in RAM.
INFO 2026-06-03 19:54:59 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,547
INFO 2026-06-03 19:54:59 MarkDuplicates Tracking 156849 as yet unmatched pairs. 18341 records in RAM.
INFO 2026-06-03 19:55:01 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,616
INFO 2026-06-03 19:55:01 MarkDuplicates Tracking 155094 as yet unmatched pairs. 16586 records in RAM.
INFO 2026-06-03 19:55:02 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr17:50,863,485
INFO 2026-06-03 19:55:02 MarkDuplicates Tracking 152267 as yet unmatched pairs. 13759 records in RAM.
INFO 2026-06-03 19:55:04 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr17:59,663,842
INFO 2026-06-03 19:55:04 MarkDuplicates Tracking 150923 as yet unmatched pairs. 12415 records in RAM.
INFO 2026-06-03 19:55:06 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr17:64,499,948
INFO 2026-06-03 19:55:06 MarkDuplicates Tracking 149835 as yet unmatched pairs. 11325 records in RAM.
INFO 2026-06-03 19:55:07 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr17:68,877,558
INFO 2026-06-03 19:55:07 MarkDuplicates Tracking 147796 as yet unmatched pairs. 9285 records in RAM.
INFO 2026-06-03 19:55:08 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr17:75,573,136
INFO 2026-06-03 19:55:08 MarkDuplicates Tracking 146812 as yet unmatched pairs. 8297 records in RAM.
INFO 2026-06-03 19:55:10 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr17:75,847,665
INFO 2026-06-03 19:55:10 MarkDuplicates Tracking 144848 as yet unmatched pairs. 6332 records in RAM.
INFO 2026-06-03 19:55:12 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr17:78,120,679
INFO 2026-06-03 19:55:12 MarkDuplicates Tracking 143499 as yet unmatched pairs. 4980 records in RAM.
INFO 2026-06-03 19:55:13 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr17:80,363,258
INFO 2026-06-03 19:55:13 MarkDuplicates Tracking 142051 as yet unmatched pairs. 3532 records in RAM.
INFO 2026-06-03 19:55:15 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr17:81,868,776
INFO 2026-06-03 19:55:15 MarkDuplicates Tracking 140407 as yet unmatched pairs. 1888 records in RAM.
INFO 2026-06-03 19:55:16 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr18:657,745
INFO 2026-06-03 19:55:16 MarkDuplicates Tracking 138603 as yet unmatched pairs. 4672 records in RAM.
INFO 2026-06-03 19:55:18 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 2s. Last read position: chr18:23,545,027
INFO 2026-06-03 19:55:18 MarkDuplicates Tracking 137233 as yet unmatched pairs. 3298 records in RAM.
INFO 2026-06-03 19:55:20 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr18:50,040,282
INFO 2026-06-03 19:55:20 MarkDuplicates Tracking 136136 as yet unmatched pairs. 2198 records in RAM.
INFO 2026-06-03 19:55:22 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr18:74,633,427
INFO 2026-06-03 19:55:22 MarkDuplicates Tracking 134560 as yet unmatched pairs. 619 records in RAM.
INFO 2026-06-03 19:55:24 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 2s. Last read position: chr19:901,452
INFO 2026-06-03 19:55:24 MarkDuplicates Tracking 132938 as yet unmatched pairs. 53225 records in RAM.
INFO 2026-06-03 19:55:26 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr19:1,300,368
INFO 2026-06-03 19:55:26 MarkDuplicates Tracking 131512 as yet unmatched pairs. 51798 records in RAM.
INFO 2026-06-03 19:55:27 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr19:2,129,105
INFO 2026-06-03 19:55:27 MarkDuplicates Tracking 129509 as yet unmatched pairs. 49794 records in RAM.
INFO 2026-06-03 19:55:29 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr19:3,708,492
INFO 2026-06-03 19:55:29 MarkDuplicates Tracking 127725 as yet unmatched pairs. 48010 records in RAM.
INFO 2026-06-03 19:55:30 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr19:5,090,613
INFO 2026-06-03 19:55:30 MarkDuplicates Tracking 125875 as yet unmatched pairs. 46160 records in RAM.
INFO 2026-06-03 19:55:32 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr19:6,420,422
INFO 2026-06-03 19:55:32 MarkDuplicates Tracking 124443 as yet unmatched pairs. 44727 records in RAM.
INFO 2026-06-03 19:55:33 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr19:8,335,509
INFO 2026-06-03 19:55:33 MarkDuplicates Tracking 122773 as yet unmatched pairs. 43057 records in RAM.
INFO 2026-06-03 19:55:35 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr19:10,637,680
INFO 2026-06-03 19:55:35 MarkDuplicates Tracking 121376 as yet unmatched pairs. 41660 records in RAM.
INFO 2026-06-03 19:55:37 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 2s. Last read position: chr19:11,436,065
INFO 2026-06-03 19:55:37 MarkDuplicates Tracking 119938 as yet unmatched pairs. 40220 records in RAM.
INFO 2026-06-03 19:55:39 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr19:13,153,392
INFO 2026-06-03 19:55:39 MarkDuplicates Tracking 119071 as yet unmatched pairs. 39353 records in RAM.
INFO 2026-06-03 19:55:40 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr19:15,110,630
INFO 2026-06-03 19:55:40 MarkDuplicates Tracking 116586 as yet unmatched pairs. 36868 records in RAM.
INFO 2026-06-03 19:55:42 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr19:15,424,364
INFO 2026-06-03 19:55:42 MarkDuplicates Tracking 115328 as yet unmatched pairs. 35609 records in RAM.
INFO 2026-06-03 19:55:44 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 2s. Last read position: chr19:17,511,809
INFO 2026-06-03 19:55:44 MarkDuplicates Tracking 113620 as yet unmatched pairs. 33896 records in RAM.
INFO 2026-06-03 19:55:47 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 2s. Last read position: chr19:18,541,774
INFO 2026-06-03 19:55:47 MarkDuplicates Tracking 111868 as yet unmatched pairs. 32139 records in RAM.
INFO 2026-06-03 19:55:50 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 3s. Last read position: chr19:32,598,178
INFO 2026-06-03 19:55:50 MarkDuplicates Tracking 110409 as yet unmatched pairs. 30678 records in RAM.
INFO 2026-06-03 19:55:52 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 2s. Last read position: chr19:35,721,048
INFO 2026-06-03 19:55:52 MarkDuplicates Tracking 108411 as yet unmatched pairs. 28679 records in RAM.
INFO 2026-06-03 19:55:54 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 2s. Last read position: chr19:38,641,570
INFO 2026-06-03 19:55:54 MarkDuplicates Tracking 106434 as yet unmatched pairs. 26699 records in RAM.
INFO 2026-06-03 19:55:56 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 2s. Last read position: chr19:39,408,584
INFO 2026-06-03 19:55:56 MarkDuplicates Tracking 105199 as yet unmatched pairs. 25463 records in RAM.
INFO 2026-06-03 19:55:59 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 2s. Last read position: chr19:39,875,887
INFO 2026-06-03 19:55:59 MarkDuplicates Tracking 104354 as yet unmatched pairs. 24618 records in RAM.
INFO 2026-06-03 19:56:01 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr19:39,886,501
INFO 2026-06-03 19:56:01 MarkDuplicates Tracking 105688 as yet unmatched pairs. 25952 records in RAM.
INFO 2026-06-03 19:56:02 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr19:39,893,440
INFO 2026-06-03 19:56:02 MarkDuplicates Tracking 102406 as yet unmatched pairs. 22670 records in RAM.
INFO 2026-06-03 19:56:04 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr19:39,913,978
INFO 2026-06-03 19:56:04 MarkDuplicates Tracking 101680 as yet unmatched pairs. 21944 records in RAM.
INFO 2026-06-03 19:56:05 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr19:40,242,663
INFO 2026-06-03 19:56:05 MarkDuplicates Tracking 98915 as yet unmatched pairs. 19179 records in RAM.
INFO 2026-06-03 19:56:07 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr19:41,687,142
INFO 2026-06-03 19:56:07 MarkDuplicates Tracking 97711 as yet unmatched pairs. 17975 records in RAM.
INFO 2026-06-03 19:56:09 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr19:42,090,198
INFO 2026-06-03 19:56:09 MarkDuplicates Tracking 96097 as yet unmatched pairs. 16361 records in RAM.
INFO 2026-06-03 19:56:11 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 2s. Last read position: chr19:42,527,350
INFO 2026-06-03 19:56:11 MarkDuplicates Tracking 95141 as yet unmatched pairs. 15395 records in RAM.
INFO 2026-06-03 19:56:13 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 2s. Last read position: chr19:45,178,146
INFO 2026-06-03 19:56:13 MarkDuplicates Tracking 92956 as yet unmatched pairs. 13210 records in RAM.
INFO 2026-06-03 19:56:16 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 2s. Last read position: chr19:46,720,599
INFO 2026-06-03 19:56:16 MarkDuplicates Tracking 91357 as yet unmatched pairs. 11609 records in RAM.
INFO 2026-06-03 19:56:18 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 2s. Last read position: chr19:48,603,610
INFO 2026-06-03 19:56:18 MarkDuplicates Tracking 90166 as yet unmatched pairs. 10418 records in RAM.
INFO 2026-06-03 19:56:21 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 2s. Last read position: chr19:49,200,771
INFO 2026-06-03 19:56:21 MarkDuplicates Tracking 88698 as yet unmatched pairs. 8950 records in RAM.
INFO 2026-06-03 19:56:23 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 2s. Last read position: chr19:49,801,023
INFO 2026-06-03 19:56:23 MarkDuplicates Tracking 86823 as yet unmatched pairs. 7075 records in RAM.
INFO 2026-06-03 19:56:25 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 2s. Last read position: chr19:50,480,639
INFO 2026-06-03 19:56:25 MarkDuplicates Tracking 85059 as yet unmatched pairs. 5311 records in RAM.
INFO 2026-06-03 19:56:27 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr19:54,454,545
INFO 2026-06-03 19:56:27 MarkDuplicates Tracking 83964 as yet unmatched pairs. 4216 records in RAM.
INFO 2026-06-03 19:56:29 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 2s. Last read position: chr19:55,455,883
INFO 2026-06-03 19:56:29 MarkDuplicates Tracking 81827 as yet unmatched pairs. 2079 records in RAM.
INFO 2026-06-03 19:56:31 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 2s. Last read position: chr19:58,085,087
INFO 2026-06-03 19:56:31 MarkDuplicates Tracking 80505 as yet unmatched pairs. 756 records in RAM.
INFO 2026-06-03 19:56:33 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 2s. Last read position: chr20:3,164,672
INFO 2026-06-03 19:56:33 MarkDuplicates Tracking 78819 as yet unmatched pairs. 12959 records in RAM.
INFO 2026-06-03 19:56:36 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 3s. Last read position: chr20:17,614,736
INFO 2026-06-03 19:56:36 MarkDuplicates Tracking 77325 as yet unmatched pairs. 11465 records in RAM.
INFO 2026-06-03 19:56:39 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 2s. Last read position: chr20:23,637,682
INFO 2026-06-03 19:56:39 MarkDuplicates Tracking 76444 as yet unmatched pairs. 10583 records in RAM.
INFO 2026-06-03 19:56:41 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr20:34,393,816
INFO 2026-06-03 19:56:41 MarkDuplicates Tracking 74903 as yet unmatched pairs. 9039 records in RAM.
INFO 2026-06-03 19:56:43 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 2s. Last read position: chr20:36,793,420
INFO 2026-06-03 19:56:43 MarkDuplicates Tracking 73328 as yet unmatched pairs. 7463 records in RAM.
INFO 2026-06-03 19:56:45 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 2s. Last read position: chr20:44,715,230
INFO 2026-06-03 19:56:45 MarkDuplicates Tracking 71894 as yet unmatched pairs. 6027 records in RAM.
INFO 2026-06-03 19:56:47 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 2s. Last read position: chr20:49,905,965
INFO 2026-06-03 19:56:47 MarkDuplicates Tracking 70661 as yet unmatched pairs. 4794 records in RAM.
INFO 2026-06-03 19:56:49 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 2s. Last read position: chr20:58,713,993
INFO 2026-06-03 19:56:49 MarkDuplicates Tracking 69291 as yet unmatched pairs. 3423 records in RAM.
INFO 2026-06-03 19:56:51 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr20:62,861,680
INFO 2026-06-03 19:56:51 MarkDuplicates Tracking 67358 as yet unmatched pairs. 1490 records in RAM.
INFO 2026-06-03 19:56:53 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr21:5,033,727
INFO 2026-06-03 19:56:53 MarkDuplicates Tracking 65881 as yet unmatched pairs. 14203 records in RAM.
INFO 2026-06-03 19:56:54 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,841
INFO 2026-06-03 19:56:54 MarkDuplicates Tracking 64125 as yet unmatched pairs. 12436 records in RAM.
INFO 2026-06-03 19:56:55 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,912
INFO 2026-06-03 19:56:55 MarkDuplicates Tracking 63609 as yet unmatched pairs. 11919 records in RAM.
INFO 2026-06-03 19:56:57 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,961
INFO 2026-06-03 19:56:57 MarkDuplicates Tracking 63558 as yet unmatched pairs. 11868 records in RAM.
INFO 2026-06-03 19:56:58 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr21:8,399,124
INFO 2026-06-03 19:56:58 MarkDuplicates Tracking 62870 as yet unmatched pairs. 11173 records in RAM.
INFO 2026-06-03 19:57:00 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr21:8,441,913
INFO 2026-06-03 19:57:00 MarkDuplicates Tracking 61743 as yet unmatched pairs. 10042 records in RAM.
INFO 2026-06-03 19:57:02 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr21:8,441,987
INFO 2026-06-03 19:57:02 MarkDuplicates Tracking 60035 as yet unmatched pairs. 8334 records in RAM.
INFO 2026-06-03 19:57:03 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,562
INFO 2026-06-03 19:57:03 MarkDuplicates Tracking 59991 as yet unmatched pairs. 8287 records in RAM.
INFO 2026-06-03 19:57:05 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr21:33,549,921
INFO 2026-06-03 19:57:05 MarkDuplicates Tracking 57526 as yet unmatched pairs. 5822 records in RAM.
INFO 2026-06-03 19:57:07 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr21:39,661,297
INFO 2026-06-03 19:57:07 MarkDuplicates Tracking 56101 as yet unmatched pairs. 4397 records in RAM.
INFO 2026-06-03 19:57:09 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr21:44,227,465
INFO 2026-06-03 19:57:09 MarkDuplicates Tracking 54369 as yet unmatched pairs. 2664 records in RAM.
INFO 2026-06-03 19:57:10 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr21:46,115,880
INFO 2026-06-03 19:57:10 MarkDuplicates Tracking 52797 as yet unmatched pairs. 1088 records in RAM.
INFO 2026-06-03 19:57:12 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr22:19,064,946
INFO 2026-06-03 19:57:12 MarkDuplicates Tracking 51094 as yet unmatched pairs. 16103 records in RAM.
INFO 2026-06-03 19:57:14 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr22:22,906,510
INFO 2026-06-03 19:57:14 MarkDuplicates Tracking 49408 as yet unmatched pairs. 14417 records in RAM.
INFO 2026-06-03 19:57:15 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr22:25,028,322
INFO 2026-06-03 19:57:15 MarkDuplicates Tracking 48064 as yet unmatched pairs. 13073 records in RAM.
INFO 2026-06-03 19:57:17 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr22:29,299,687
INFO 2026-06-03 19:57:17 MarkDuplicates Tracking 46829 as yet unmatched pairs. 11837 records in RAM.
INFO 2026-06-03 19:57:19 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr22:31,754,128
INFO 2026-06-03 19:57:19 MarkDuplicates Tracking 44884 as yet unmatched pairs. 9892 records in RAM.
INFO 2026-06-03 19:57:21 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 2s. Last read position: chr22:36,326,567
INFO 2026-06-03 19:57:21 MarkDuplicates Tracking 43513 as yet unmatched pairs. 8521 records in RAM.
INFO 2026-06-03 19:57:23 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 2s. Last read position: chr22:37,944,191
INFO 2026-06-03 19:57:23 MarkDuplicates Tracking 41642 as yet unmatched pairs. 6649 records in RAM.
INFO 2026-06-03 19:57:25 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 2s. Last read position: chr22:40,265,649
INFO 2026-06-03 19:57:25 MarkDuplicates Tracking 40008 as yet unmatched pairs. 5014 records in RAM.
INFO 2026-06-03 19:57:28 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 2s. Last read position: chr22:42,214,871
INFO 2026-06-03 19:57:28 MarkDuplicates Tracking 38635 as yet unmatched pairs. 3641 records in RAM.
INFO 2026-06-03 19:57:29 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr22:50,220,226
INFO 2026-06-03 19:57:29 MarkDuplicates Tracking 37214 as yet unmatched pairs. 2220 records in RAM.
INFO 2026-06-03 19:57:31 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 1s. Last read position: chr22:50,720,897
INFO 2026-06-03 19:57:31 MarkDuplicates Tracking 35579 as yet unmatched pairs. 585 records in RAM.
INFO 2026-06-03 19:57:33 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chrX:17,732,241
INFO 2026-06-03 19:57:33 MarkDuplicates Tracking 33814 as yet unmatched pairs. 9719 records in RAM.
INFO 2026-06-03 19:57:34 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chrX:43,728,292
INFO 2026-06-03 19:57:34 MarkDuplicates Tracking 32625 as yet unmatched pairs. 8506 records in RAM.
INFO 2026-06-03 19:57:36 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chrX:50,085,995
INFO 2026-06-03 19:57:36 MarkDuplicates Tracking 31172 as yet unmatched pairs. 7052 records in RAM.
INFO 2026-06-03 19:57:38 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chrX:65,737,317
INFO 2026-06-03 19:57:38 MarkDuplicates Tracking 29947 as yet unmatched pairs. 5827 records in RAM.
INFO 2026-06-03 19:57:40 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 2s. Last read position: chrX:77,684,152
INFO 2026-06-03 19:57:40 MarkDuplicates Tracking 28661 as yet unmatched pairs. 4539 records in RAM.
INFO 2026-06-03 19:57:41 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 1s. Last read position: chrX:120,163,717
INFO 2026-06-03 19:57:41 MarkDuplicates Tracking 27250 as yet unmatched pairs. 3126 records in RAM.
INFO 2026-06-03 19:57:43 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 1s. Last read position: chrX:153,693,309
INFO 2026-06-03 19:57:43 MarkDuplicates Tracking 26155 as yet unmatched pairs. 2027 records in RAM.
INFO 2026-06-03 19:57:45 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 1s. Last read position: chrX:154,441,132
INFO 2026-06-03 19:57:45 MarkDuplicates Tracking 24606 as yet unmatched pairs. 478 records in RAM.
INFO 2026-06-03 19:57:47 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,135
INFO 2026-06-03 19:57:47 MarkDuplicates Tracking 23872 as yet unmatched pairs. 6039 records in RAM.
INFO 2026-06-03 19:57:48 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:15:23s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,193
INFO 2026-06-03 19:57:48 MarkDuplicates Tracking 23921 as yet unmatched pairs. 6088 records in RAM.
INFO 2026-06-03 19:57:50 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: GL000220.1:116,771
INFO 2026-06-03 19:57:50 MarkDuplicates Tracking 18066 as yet unmatched pairs. 233 records in RAM.
INFO 2026-06-03 19:57:51 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 1s. Last read position: GL000220.1:158,134
INFO 2026-06-03 19:57:51 MarkDuplicates Tracking 18057 as yet unmatched pairs. 224 records in RAM.
INFO 2026-06-03 19:57:52 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 1s. Last read position: GL000220.1:159,553
INFO 2026-06-03 19:57:52 MarkDuplicates Tracking 17858 as yet unmatched pairs. 25 records in RAM.
INFO 2026-06-03 19:57:53 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: KI270733.1:130,774
INFO 2026-06-03 19:57:53 MarkDuplicates Tracking 17688 as yet unmatched pairs. 17681 records in RAM.
INFO 2026-06-03 19:57:56 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 2s. Last read position: KI270733.1:131,040
INFO 2026-06-03 19:57:56 MarkDuplicates Tracking 5446 as yet unmatched pairs. 5439 records in RAM.
INFO 2026-06-03 19:57:58 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,640
INFO 2026-06-03 19:57:58 MarkDuplicates Tracking 890 as yet unmatched pairs. 883 records in RAM.
INFO 2026-06-03 19:58:00 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 1s. Last read position: KI270733.1:176,094
INFO 2026-06-03 19:58:00 MarkDuplicates Tracking 148 as yet unmatched pairs. 141 records in RAM.
INFO 2026-06-03 19:58:01 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:15:36s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,243
INFO 2026-06-03 19:58:01 MarkDuplicates Tracking 27 as yet unmatched pairs. 20 records in RAM.
INFO 2026-06-03 19:58:02 MarkDuplicates Read 462565797 records. 0 pairs never matched.
INFO 2026-06-03 19:59:10 MarkDuplicates After buildSortedReadEndLists freeMemory: 36577004648; totalMemory: 52244250624; maxMemory: 63585648640
INFO 2026-06-03 19:59:10 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-03 19:59:35 MarkDuplicates Traversing read pair information and detecting duplicates.
INFO 2026-06-03 19:59:55 OpticalDuplicateFinder Large duplicate set. size = 1013
INFO 2026-06-03 19:59:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,475
INFO 2026-06-03 20:00:07 OpticalDuplicateFinder Large duplicate set. size = 1198
INFO 2026-06-03 20:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,243
INFO 2026-06-03 20:00:07 OpticalDuplicateFinder Large duplicate set. size = 1674
INFO 2026-06-03 20:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,212
INFO 2026-06-03 20:00:07 OpticalDuplicateFinder Large duplicate set. size = 1843
INFO 2026-06-03 20:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,956
INFO 2026-06-03 20:00:07 OpticalDuplicateFinder Large duplicate set. size = 1225
INFO 2026-06-03 20:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,793
INFO 2026-06-03 20:00:07 OpticalDuplicateFinder Large duplicate set. size = 1937
INFO 2026-06-03 20:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,724
INFO 2026-06-03 20:00:07 OpticalDuplicateFinder Large duplicate set. size = 1769
INFO 2026-06-03 20:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,321
INFO 2026-06-03 20:00:08 OpticalDuplicateFinder Large duplicate set. size = 1050
INFO 2026-06-03 20:00:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,175
INFO 2026-06-03 20:00:08 OpticalDuplicateFinder Large duplicate set. size = 1035
INFO 2026-06-03 20:00:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,827
INFO 2026-06-03 20:00:08 OpticalDuplicateFinder Large duplicate set. size = 1035
INFO 2026-06-03 20:00:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,982
INFO 2026-06-03 20:00:08 OpticalDuplicateFinder Large duplicate set. size = 1078
INFO 2026-06-03 20:00:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,196
INFO 2026-06-03 20:00:08 OpticalDuplicateFinder Large duplicate set. size = 1002
INFO 2026-06-03 20:00:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,988
INFO 2026-06-03 20:00:08 OpticalDuplicateFinder Large duplicate set. size = 1659
INFO 2026-06-03 20:00:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,468
INFO 2026-06-03 20:00:08 OpticalDuplicateFinder Large duplicate set. size = 2157
INFO 2026-06-03 20:00:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,970
INFO 2026-06-03 20:00:08 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,336
INFO 2026-06-03 20:00:08 OpticalDuplicateFinder Large duplicate set. size = 1206
INFO 2026-06-03 20:00:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,158
INFO 2026-06-03 20:00:08 OpticalDuplicateFinder Large duplicate set. size = 1045
INFO 2026-06-03 20:00:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,030
INFO 2026-06-03 20:00:08 OpticalDuplicateFinder Large duplicate set. size = 1185
INFO 2026-06-03 20:00:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,229
INFO 2026-06-03 20:00:08 OpticalDuplicateFinder Large duplicate set. size = 1512
INFO 2026-06-03 20:00:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,924
INFO 2026-06-03 20:00:09 OpticalDuplicateFinder Large duplicate set. size = 1163
INFO 2026-06-03 20:00:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,334
INFO 2026-06-03 20:00:09 OpticalDuplicateFinder Large duplicate set. size = 1013
INFO 2026-06-03 20:00:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,045
INFO 2026-06-03 20:00:09 OpticalDuplicateFinder Large duplicate set. size = 1015
INFO 2026-06-03 20:00:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,377
INFO 2026-06-03 20:00:09 OpticalDuplicateFinder Large duplicate set. size = 1169
INFO 2026-06-03 20:00:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,824
INFO 2026-06-03 20:00:09 OpticalDuplicateFinder Large duplicate set. size = 1029
INFO 2026-06-03 20:00:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,621
INFO 2026-06-03 20:00:09 OpticalDuplicateFinder Large duplicate set. size = 1749
INFO 2026-06-03 20:00:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,758
INFO 2026-06-03 20:00:09 OpticalDuplicateFinder Large duplicate set. size = 1500
INFO 2026-06-03 20:00:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,907
INFO 2026-06-03 20:00:09 OpticalDuplicateFinder Large duplicate set. size = 2022
INFO 2026-06-03 20:00:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,399
INFO 2026-06-03 20:00:09 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,646
INFO 2026-06-03 20:00:09 OpticalDuplicateFinder Large duplicate set. size = 1275
INFO 2026-06-03 20:00:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,776
INFO 2026-06-03 20:00:09 OpticalDuplicateFinder Large duplicate set. size = 1052
INFO 2026-06-03 20:00:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,912
INFO 2026-06-03 20:00:09 OpticalDuplicateFinder Large duplicate set. size = 1378
INFO 2026-06-03 20:00:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,949
INFO 2026-06-03 20:00:10 OpticalDuplicateFinder Large duplicate set. size = 1204
INFO 2026-06-03 20:00:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,674
INFO 2026-06-03 20:00:10 OpticalDuplicateFinder Large duplicate set. size = 1480
INFO 2026-06-03 20:00:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,153
INFO 2026-06-03 20:00:10 OpticalDuplicateFinder Large duplicate set. size = 1453
INFO 2026-06-03 20:00:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,786
INFO 2026-06-03 20:00:10 OpticalDuplicateFinder Large duplicate set. size = 1476
INFO 2026-06-03 20:00:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,361
INFO 2026-06-03 20:00:10 OpticalDuplicateFinder Large duplicate set. size = 1422
INFO 2026-06-03 20:00:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,267
INFO 2026-06-03 20:00:10 OpticalDuplicateFinder Large duplicate set. size = 2495
INFO 2026-06-03 20:00:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,302
INFO 2026-06-03 20:00:10 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,237
INFO 2026-06-03 20:00:10 OpticalDuplicateFinder Large duplicate set. size = 3575
INFO 2026-06-03 20:00:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,055
INFO 2026-06-03 20:00:10 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,226
INFO 2026-06-03 20:00:10 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,463
INFO 2026-06-03 20:00:10 OpticalDuplicateFinder Large duplicate set. size = 1480
INFO 2026-06-03 20:00:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,649
INFO 2026-06-03 20:00:10 OpticalDuplicateFinder Large duplicate set. size = 1013
INFO 2026-06-03 20:00:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,257
INFO 2026-06-03 20:00:10 OpticalDuplicateFinder Large duplicate set. size = 1801
INFO 2026-06-03 20:00:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,103
INFO 2026-06-03 20:00:10 OpticalDuplicateFinder Large duplicate set. size = 1200
INFO 2026-06-03 20:00:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,832
INFO 2026-06-03 20:00:10 OpticalDuplicateFinder Large duplicate set. size = 1057
INFO 2026-06-03 20:00:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,353
INFO 2026-06-03 20:00:10 OpticalDuplicateFinder Large duplicate set. size = 1302
INFO 2026-06-03 20:00:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,436
INFO 2026-06-03 20:00:11 OpticalDuplicateFinder Large duplicate set. size = 1234
INFO 2026-06-03 20:00:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,566
INFO 2026-06-03 20:00:11 OpticalDuplicateFinder Large duplicate set. size = 1253
INFO 2026-06-03 20:00:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,947
INFO 2026-06-03 20:00:11 OpticalDuplicateFinder Large duplicate set. size = 1062
INFO 2026-06-03 20:00:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,583
INFO 2026-06-03 20:00:11 OpticalDuplicateFinder Large duplicate set. size = 2312
INFO 2026-06-03 20:00:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,337
INFO 2026-06-03 20:00:11 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,787
INFO 2026-06-03 20:00:11 OpticalDuplicateFinder Large duplicate set. size = 1018
INFO 2026-06-03 20:00:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,951
INFO 2026-06-03 20:00:11 OpticalDuplicateFinder Large duplicate set. size = 1448
INFO 2026-06-03 20:00:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,639
INFO 2026-06-03 20:00:11 OpticalDuplicateFinder Large duplicate set. size = 1153
INFO 2026-06-03 20:00:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,268
INFO 2026-06-03 20:00:11 OpticalDuplicateFinder Large duplicate set. size = 1197
INFO 2026-06-03 20:00:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,818
INFO 2026-06-03 20:00:11 OpticalDuplicateFinder Large duplicate set. size = 1021
INFO 2026-06-03 20:00:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,835
INFO 2026-06-03 20:00:11 OpticalDuplicateFinder Large duplicate set. size = 1494
INFO 2026-06-03 20:00:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,006
INFO 2026-06-03 20:00:11 OpticalDuplicateFinder Large duplicate set. size = 1034
INFO 2026-06-03 20:00:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,322
INFO 2026-06-03 20:00:12 OpticalDuplicateFinder Large duplicate set. size = 1220
INFO 2026-06-03 20:00:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,626
INFO 2026-06-03 20:00:12 OpticalDuplicateFinder Large duplicate set. size = 2252
INFO 2026-06-03 20:00:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,741
INFO 2026-06-03 20:00:12 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,366
INFO 2026-06-03 20:00:12 OpticalDuplicateFinder Large duplicate set. size = 1202
INFO 2026-06-03 20:00:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,506
INFO 2026-06-03 20:00:13 OpticalDuplicateFinder Large duplicate set. size = 1022
INFO 2026-06-03 20:00:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,634
INFO 2026-06-03 20:00:13 OpticalDuplicateFinder Large duplicate set. size = 1021
INFO 2026-06-03 20:00:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,713
INFO 2026-06-03 20:00:13 OpticalDuplicateFinder Large duplicate set. size = 1241
INFO 2026-06-03 20:00:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,755
INFO 2026-06-03 20:00:13 OpticalDuplicateFinder Large duplicate set. size = 1360
INFO 2026-06-03 20:00:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,189
INFO 2026-06-03 20:00:13 OpticalDuplicateFinder Large duplicate set. size = 1170
INFO 2026-06-03 20:00:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,081
INFO 2026-06-03 20:00:13 OpticalDuplicateFinder Large duplicate set. size = 2865
INFO 2026-06-03 20:00:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,940
INFO 2026-06-03 20:00:13 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,990
INFO 2026-06-03 20:00:13 OpticalDuplicateFinder Large duplicate set. size = 1065
INFO 2026-06-03 20:00:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,730
INFO 2026-06-03 20:00:13 OpticalDuplicateFinder Large duplicate set. size = 2555
INFO 2026-06-03 20:00:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,773
INFO 2026-06-03 20:00:13 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,635
INFO 2026-06-03 20:00:13 OpticalDuplicateFinder Large duplicate set. size = 1046
INFO 2026-06-03 20:00:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,833
INFO 2026-06-03 20:00:13 OpticalDuplicateFinder Large duplicate set. size = 1296
INFO 2026-06-03 20:00:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,409
INFO 2026-06-03 20:00:14 OpticalDuplicateFinder Large duplicate set. size = 1267
INFO 2026-06-03 20:00:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,493
INFO 2026-06-03 20:00:14 OpticalDuplicateFinder Large duplicate set. size = 1405
INFO 2026-06-03 20:00:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,927
INFO 2026-06-03 20:00:14 OpticalDuplicateFinder Large duplicate set. size = 1026
INFO 2026-06-03 20:00:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,598
INFO 2026-06-03 20:00:15 OpticalDuplicateFinder Large duplicate set. size = 1046
INFO 2026-06-03 20:00:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,844
INFO 2026-06-03 20:00:15 OpticalDuplicateFinder Large duplicate set. size = 1208
INFO 2026-06-03 20:00:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,165
INFO 2026-06-03 20:01:00 OpticalDuplicateFinder Large duplicate set. size = 1156
INFO 2026-06-03 20:01:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,126
INFO 2026-06-03 20:01:04 OpticalDuplicateFinder Large duplicate set. size = 1592
INFO 2026-06-03 20:01:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,937
INFO 2026-06-03 20:01:04 OpticalDuplicateFinder Large duplicate set. size = 1231
INFO 2026-06-03 20:01:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,791
INFO 2026-06-03 20:01:04 OpticalDuplicateFinder Large duplicate set. size = 1603
INFO 2026-06-03 20:01:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,044
INFO 2026-06-03 20:01:04 OpticalDuplicateFinder Large duplicate set. size = 2024
INFO 2026-06-03 20:01:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,056
INFO 2026-06-03 20:01:04 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,400
INFO 2026-06-03 20:01:04 OpticalDuplicateFinder Large duplicate set. size = 3218
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,971
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,952
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,798
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 2036
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,452
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,891
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 1077
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,204
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 1147
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,859
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 1168
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,560
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 1121
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,429
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 2079
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,648
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,626
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 1437
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,462
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 1285
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,154
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 1423
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,099
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 1102
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,645
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 2174
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,056
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,902
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 1819
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,093
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 1348
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,508
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 1188
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,980
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 1033
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,162
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 1720
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,234
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 1282
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,955
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 1034
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,050
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 1270
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,734
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 1069
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,721
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 1470
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,831
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 1187
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,835
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 1184
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,662
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 1178
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,464
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 1673
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,205
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 2385
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,621
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,269
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 2514
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,213
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,983
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 1980
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,793
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 3583
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,953
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,819
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,918
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 2644
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,887
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,542
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 1021
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,447
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 1024
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,273
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 1494
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,754
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 1322
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,185
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 1017
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,516
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 1333
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,397
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 1112
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,178
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 1856
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,166
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 1331
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,487
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder Large duplicate set. size = 1161
INFO 2026-06-03 20:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,712
INFO 2026-06-03 20:01:05 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-03 20:01:06 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-03 20:02:04 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-03 20:02:07 MarkDuplicates After generateDuplicateIndexes freeMemory: 204564816; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-03 20:02:07 MarkDuplicates Marking 307068523 records as duplicates.
INFO 2026-06-03 20:02:07 MarkDuplicates Found 8925512 optical duplicate clusters.
INFO 2026-06-03 20:02:07 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-03 20:02:30 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:22s. Time for last 10,000,000: 22s. Last read position: chr1:32,226,415
INFO 2026-06-03 20:02:51 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:44s. Time for last 10,000,000: 21s. Last read position: chr1:143,904,241
INFO 2026-06-03 20:03:13 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:01:05s. Time for last 10,000,000: 21s. Last read position: chr1:186,339,745
INFO 2026-06-03 20:03:31 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:24s. Time for last 10,000,000: 18s. Last read position: chr2:32,916,254
INFO 2026-06-03 20:03:54 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:47s. Time for last 10,000,000: 22s. Last read position: chr2:108,754,937
INFO 2026-06-03 20:04:16 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:02:08s. Time for last 10,000,000: 21s. Last read position: chr2:224,862,694
INFO 2026-06-03 20:04:38 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:31s. Time for last 10,000,000: 22s. Last read position: chr3:49,972,125
INFO 2026-06-03 20:05:00 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:52s. Time for last 10,000,000: 21s. Last read position: chr3:195,725,206
INFO 2026-06-03 20:05:23 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:03:15s. Time for last 10,000,000: 22s. Last read position: chr4:83,094,744
INFO 2026-06-03 20:05:45 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:03:38s. Time for last 10,000,000: 22s. Last read position: chr5:113,018,370
INFO 2026-06-03 20:06:07 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:59s. Time for last 10,000,000: 21s. Last read position: chr5:181,260,264
INFO 2026-06-03 20:06:29 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:04:22s. Time for last 10,000,000: 22s. Last read position: chr6:47,286,210
INFO 2026-06-03 20:06:51 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:04:44s. Time for last 10,000,000: 21s. Last read position: chr7:5,923,945
INFO 2026-06-03 20:07:14 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:05:07s. Time for last 10,000,000: 23s. Last read position: chr7:100,991,457
INFO 2026-06-03 20:07:34 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:05:27s. Time for last 10,000,000: 19s. Last read position: chr7:100,995,664
INFO 2026-06-03 20:07:57 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:05:49s. Time for last 10,000,000: 22s. Last read position: chr7:100,997,809
INFO 2026-06-03 20:08:16 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:06:08s. Time for last 10,000,000: 19s. Last read position: chr7:100,999,961
INFO 2026-06-03 20:08:38 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:06:31s. Time for last 10,000,000: 22s. Last read position: chr7:101,002,055
INFO 2026-06-03 20:09:02 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:06:54s. Time for last 10,000,000: 23s. Last read position: chr7:139,572,962
INFO 2026-06-03 20:09:23 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:07:16s. Time for last 10,000,000: 21s. Last read position: chr8:94,865,457
INFO 2026-06-03 20:09:46 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:07:38s. Time for last 10,000,000: 22s. Last read position: chr9:730,170
INFO 2026-06-03 20:10:06 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:07:59s. Time for last 10,000,000: 20s. Last read position: chr9:128,633,220
INFO 2026-06-03 20:10:27 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:08:20s. Time for last 10,000,000: 20s. Last read position: chr10:70,153,850
INFO 2026-06-03 20:10:47 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:08:39s. Time for last 10,000,000: 19s. Last read position: chr11:1,075,773
INFO 2026-06-03 20:11:05 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:08:57s. Time for last 10,000,000: 18s. Last read position: chr11:2,929,108
INFO 2026-06-03 20:11:23 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:09:15s. Time for last 10,000,000: 17s. Last read position: chr11:65,654,413
INFO 2026-06-03 20:11:43 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:09:36s. Time for last 10,000,000: 20s. Last read position: chr12:754,065
INFO 2026-06-03 20:12:01 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:09:54s. Time for last 10,000,000: 18s. Last read position: chr12:57,096,581
INFO 2026-06-03 20:12:18 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:10:10s. Time for last 10,000,000: 16s. Last read position: chr13:20,189,225
INFO 2026-06-03 20:12:34 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:10:27s. Time for last 10,000,000: 16s. Last read position: chr14:64,932,202
INFO 2026-06-03 20:12:53 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:10:45s. Time for last 10,000,000: 18s. Last read position: chr15:41,900,660
INFO 2026-06-03 20:13:09 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:11:02s. Time for last 10,000,000: 16s. Last read position: chr16:1,446,517
INFO 2026-06-03 20:13:27 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:11:20s. Time for last 10,000,000: 17s. Last read position: chr16:22,533,777
INFO 2026-06-03 20:13:45 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:11:37s. Time for last 10,000,000: 17s. Last read position: chr16:67,195,822
INFO 2026-06-03 20:14:02 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:11:55s. Time for last 10,000,000: 17s. Last read position: chr17:7,513,977
INFO 2026-06-03 20:14:18 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:12:11s. Time for last 10,000,000: 16s. Last read position: chr17:45,136,697
INFO 2026-06-03 20:14:34 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:12:27s. Time for last 10,000,000: 16s. Last read position: chr17:75,847,665
INFO 2026-06-03 20:14:51 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:12:43s. Time for last 10,000,000: 16s. Last read position: chr19:2,129,105
INFO 2026-06-03 20:15:07 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:12:59s. Time for last 10,000,000: 16s. Last read position: chr19:17,511,809
INFO 2026-06-03 20:15:23 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:13:15s. Time for last 10,000,000: 16s. Last read position: chr19:40,242,663
INFO 2026-06-03 20:15:39 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:13:31s. Time for last 10,000,000: 15s. Last read position: chr19:54,454,545
INFO 2026-06-03 20:15:55 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:13:48s. Time for last 10,000,000: 16s. Last read position: chr20:58,713,993
INFO 2026-06-03 20:16:10 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:14:02s. Time for last 10,000,000: 14s. Last read position: chr21:33,549,921
INFO 2026-06-03 20:16:26 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:14:18s. Time for last 10,000,000: 16s. Last read position: chr22:37,944,191
INFO 2026-06-03 20:16:42 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:14:35s. Time for last 10,000,000: 16s. Last read position: chrX:120,163,717
INFO 2026-06-03 20:16:57 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:14:50s. Time for last 10,000,000: 14s. Last read position: KI270733.1:133,640
INFO 2026-06-03 20:17:09 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-03 20:17:09 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-03 20:17:09 MarkDuplicates Getting Memory Stats.
INFO 2026-06-03 20:17:09 MarkDuplicates Before output close freeMemory: 204529368; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-03 20:17:09 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-03 20:17:09 MarkDuplicates After output close freeMemory: 104771872; totalMemory: 134217728; maxMemory: 63585648640
[Wed Jun 03 20:17:09 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 34.76 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory