Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/b040d188af7d6c9c34f3313634ec30/aih-tih-sc-01eb49-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/ensembl/ctat_ref_annot.interval_list Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/db6e92a4198106ad0da2f5b315e079/aih-tih-sc-01eb49-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/d474ee4f1b676578fdb339cdcbf409/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/d474ee4f1b676578fdb339cdcbf409/.command.run Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/ensembl/ref_annot.gtf.refflat ==> STAGING COMPLETE (6 inputs) /usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory Jun 03, 2026 8:33:04 PM com.intel.gkl.NativeLibraryLoader load INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so [Wed Jun 03 20:33:04 GMT 2026] CollectRnaSeqMetrics --REF_FLAT ref_annot.gtf.refflat --RIBOSOMAL_INTERVALS ctat_ref_annot.interval_list --STRAND_SPECIFICITY NONE --INPUT aih-tih-sc-01eb49-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-01eb49-R1_A23YTGFLT4_1_rna_metrics.txt --TMP_DIR ./tmp --MINIMUM_LENGTH 500 --RRNA_FRAGMENT_PERCENTAGE 0.8 --METRIC_ACCUMULATION_LEVEL ALL_READS --END_BIAS_BASES 100 --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Wed Jun 03 20:33:05 GMT 2026] Executing as ?@nf-d5d474ee4f1b676578fdb339cdcbf409-acf06-bfqct on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0 WARNING: BAM index file /tmp/nxf.XXXXy1n6Xv/aih-tih-sc-01eb49-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai is older than BAM /tmp/nxf.XXXXy1n6Xv/aih-tih-sc-01eb49-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam INFO 2026-06-03 20:33:07 CollectRnaSeqMetrics Loaded 58279 genes. INFO 2026-06-03 20:33:17 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 10s. Last read position: chr1:1,244,410 INFO 2026-06-03 20:33:29 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 12s. Last read position: chr1:1,754,195 INFO 2026-06-03 20:33:41 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 12s. Last read position: chr1:6,496,520 INFO 2026-06-03 20:33:49 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 7s. Last read position: chr1:9,871,186 INFO 2026-06-03 20:34:03 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 13s. Last read position: chr1:12,244,389 INFO 2026-06-03 20:34:15 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 12s. Last read position: chr1:16,131,746 INFO 2026-06-03 20:34:24 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 8s. Last read position: chr1:19,144,809 INFO 2026-06-03 20:34:41 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 16s. Last read position: chr1:21,823,365 INFO 2026-06-03 20:34:56 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 15s. Last read position: chr1:22,086,722 INFO 2026-06-03 20:35:00 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 4s. Last read position: chr1:23,794,530 INFO 2026-06-03 20:35:08 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 7s. Last read position: chr1:26,554,624 INFO 2026-06-03 20:35:13 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 4s. Last read position: chr1:26,863,766 INFO 2026-06-03 20:35:17 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 4s. Last read position: chr1:27,841,141 INFO 2026-06-03 20:35:30 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 12s. Last read position: chr1:31,694,143 INFO 2026-06-03 20:35:42 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 11s. Last read position: chr1:34,757,888 INFO 2026-06-03 20:35:48 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 6s. Last read position: chr1:36,320,236 INFO 2026-06-03 20:36:31 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 42s. Last read position: chr1:39,424,069 INFO 2026-06-03 20:37:14 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 43s. Last read position: chr1:42,693,499 INFO 2026-06-03 20:37:29 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 15s. Last read position: chr1:43,975,010 INFO 2026-06-03 20:37:38 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 9s. Last read position: chr1:46,635,961 INFO 2026-06-03 20:37:50 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 11s. Last read position: chr1:54,758,723 INFO 2026-06-03 20:38:04 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 13s. Last read position: chr1:66,365,723 INFO 2026-06-03 20:38:19 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 14s. Last read position: chr1:85,581,025 INFO 2026-06-03 20:38:23 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 4s. Last read position: chr1:89,381,944 INFO 2026-06-03 20:38:30 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 7s. Last read position: chr1:108,199,962 INFO 2026-06-03 20:38:39 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 8s. Last read position: chr1:110,342,055 INFO 2026-06-03 20:38:47 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 8s. Last read position: chr1:114,511,072 INFO 2026-06-03 20:38:55 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 8s. Last read position: chr1:119,915,692 INFO 2026-06-03 20:39:04 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 8s. Last read position: chr1:120,453,413 INFO 2026-06-03 20:39:09 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 5s. Last read position: chr1:146,128,252 INFO 2026-06-03 20:39:20 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 11s. Last read position: chr1:148,981,297 INFO 2026-06-03 20:39:25 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 5s. Last read position: chr1:150,159,201 INFO 2026-06-03 20:39:33 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 7s. Last read position: chr1:150,806,705 INFO 2026-06-03 20:39:40 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 7s. Last read position: chr1:152,155,388 INFO 2026-06-03 20:39:45 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 4s. Last read position: chr1:152,305,105 INFO 2026-06-03 20:39:53 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 7s. Last read position: chr1:152,311,401 INFO 2026-06-03 20:40:03 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 10s. Last read position: chr1:152,410,162 INFO 2026-06-03 20:40:10 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 6s. Last read position: chr1:152,566,134 INFO 2026-06-03 20:40:11 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr1:152,759,871 INFO 2026-06-03 20:40:12 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr1:152,911,089 INFO 2026-06-03 20:40:14 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr1:153,003,177 INFO 2026-06-03 20:40:17 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 2s. Last read position: chr1:153,032,363 INFO 2026-06-03 20:40:18 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr1:153,040,244 INFO 2026-06-03 20:40:19 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr1:153,056,611 INFO 2026-06-03 20:40:20 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 0s. Last read position: chr1:153,070,703 INFO 2026-06-03 20:40:22 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr1:153,093,555 INFO 2026-06-03 20:40:23 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr1:153,093,709 INFO 2026-06-03 20:40:25 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr1:153,360,651 INFO 2026-06-03 20:40:26 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr1:153,420,153 INFO 2026-06-03 20:40:28 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr1:153,457,880 INFO 2026-06-03 20:40:31 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 2s. Last read position: chr1:153,659,467 INFO 2026-06-03 20:40:44 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 12s. Last read position: chr1:154,257,126 INFO 2026-06-03 20:41:05 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 21s. Last read position: chr1:155,056,432 INFO 2026-06-03 20:41:26 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 21s. Last read position: chr1:155,957,761 INFO 2026-06-03 20:41:48 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 21s. Last read position: chr1:156,136,905 INFO 2026-06-03 20:42:13 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 25s. Last read position: chr1:156,591,778 INFO 2026-06-03 20:42:20 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 6s. Last read position: chr1:159,858,739 INFO 2026-06-03 20:42:30 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 10s. Last read position: chr1:161,165,394 INFO 2026-06-03 20:42:42 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 11s. Last read position: chr1:167,396,332 INFO 2026-06-03 20:42:51 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 9s. Last read position: chr1:171,587,689 INFO 2026-06-03 20:43:00 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 8s. Last read position: chr1:180,196,460 INFO 2026-06-03 20:43:06 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 6s. Last read position: chr1:184,054,786 INFO 2026-06-03 20:43:15 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 9s. Last read position: chr1:196,725,160 INFO 2026-06-03 20:43:24 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 8s. Last read position: chr1:201,317,645 INFO 2026-06-03 20:43:31 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 7s. Last read position: chr1:201,957,283 INFO 2026-06-03 20:43:41 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 9s. Last read position: chr1:203,799,219 INFO 2026-06-03 20:43:50 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 9s. Last read position: chr1:207,022,955 INFO 2026-06-03 20:43:57 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 7s. Last read position: chr1:212,035,349 INFO 2026-06-03 20:44:04 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 6s. Last read position: chr1:224,411,497 INFO 2026-06-03 20:44:16 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 12s. Last read position: chr1:228,166,116 INFO 2026-06-03 20:44:44 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 27s. Last read position: chr1:232,514,389 INFO 2026-06-03 20:44:58 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 13s. Last read position: chr1:243,552,902 INFO 2026-06-03 20:45:10 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 12s. Last read position: chr2:3,576,534 INFO 2026-06-03 20:45:19 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 8s. Last read position: chr2:14,634,588 INFO 2026-06-03 20:45:26 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 7s. Last read position: chr2:20,224,911 INFO 2026-06-03 20:45:37 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 10s. Last read position: chr2:26,776,446 INFO 2026-06-03 20:45:45 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 8s. Last read position: chr2:28,776,866 INFO 2026-06-03 20:45:55 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 9s. Last read position: chr2:32,916,255 INFO 2026-06-03 20:45:58 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 3s. Last read position: chr2:32,916,264 INFO 2026-06-03 20:46:03 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 4s. Last read position: chr2:32,916,406 INFO 2026-06-03 20:46:04 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 0s. Last read position: chr2:32,916,411 INFO 2026-06-03 20:46:13 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 8s. Last read position: chr2:39,278,434 INFO 2026-06-03 20:46:24 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 11s. Last read position: chr2:46,759,912 INFO 2026-06-03 20:46:39 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 14s. Last read position: chr2:55,317,788 INFO 2026-06-03 20:47:02 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 23s. Last read position: chr2:65,088,383 INFO 2026-06-03 20:47:22 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 19s. Last read position: chr2:71,076,648 INFO 2026-06-03 20:47:40 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 18s. Last read position: chr2:74,462,938 INFO 2026-06-03 20:47:48 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 8s. Last read position: chr2:86,505,792 INFO 2026-06-03 20:47:55 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 6s. Last read position: chr2:96,552,122 INFO 2026-06-03 20:48:07 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 12s. Last read position: chr2:102,176,446 INFO 2026-06-03 20:48:12 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 4s. Last read position: chr2:109,804,055 INFO 2026-06-03 20:48:17 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 4s. Last read position: chr2:113,127,731 INFO 2026-06-03 20:48:24 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 6s. Last read position: chr2:119,368,282 INFO 2026-06-03 20:48:36 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 12s. Last read position: chr2:131,263,822 INFO 2026-06-03 20:48:52 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 15s. Last read position: chr2:151,538,241 INFO 2026-06-03 20:49:37 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:16:30s. Time for last 1,000,000: 45s. Last read position: chr2:151,650,583 INFO 2026-06-03 20:50:11 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:17:04s. Time for last 1,000,000: 33s. Last read position: chr2:160,196,345 INFO 2026-06-03 20:50:24 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:17:17s. Time for last 1,000,000: 12s. Last read position: chr2:172,489,618 INFO 2026-06-03 20:50:42 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 18s. Last read position: chr2:178,531,747 INFO 2026-06-03 20:51:43 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 61s. Last read position: chr2:178,552,040 INFO 2026-06-03 20:53:15 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 91s. Last read position: chr2:178,572,859 INFO 2026-06-03 20:54:57 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:21:50s. Time for last 1,000,000: 101s. Last read position: chr2:178,592,453 INFO 2026-06-03 20:57:11 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:24:04s. Time for last 1,000,000: 133s. Last read position: chr2:178,618,810 INFO 2026-06-03 20:59:41 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:26:34s. Time for last 1,000,000: 149s. Last read position: chr2:178,657,756 INFO 2026-06-03 21:02:43 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:29:36s. Time for last 1,000,000: 182s. Last read position: chr2:178,712,370 INFO 2026-06-03 21:06:40 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:33:33s. Time for last 1,000,000: 237s. Last read position: chr2:178,735,880 INFO 2026-06-03 21:10:52 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:37:45s. Time for last 1,000,000: 252s. Last read position: chr2:178,802,310 INFO 2026-06-03 21:11:05 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:37:58s. Time for last 1,000,000: 12s. Last read position: chr2:188,994,576 INFO 2026-06-03 21:11:19 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:38:12s. Time for last 1,000,000: 14s. Last read position: chr2:189,561,968 INFO 2026-06-03 21:11:44 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:38:37s. Time for last 1,000,000: 24s. Last read position: chr2:197,393,001 INFO 2026-06-03 21:12:03 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:38:55s. Time for last 1,000,000: 18s. Last read position: chr2:203,190,710 INFO 2026-06-03 21:12:14 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:39:07s. Time for last 1,000,000: 11s. Last read position: chr2:215,361,613 INFO 2026-06-03 21:12:38 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:39:31s. Time for last 1,000,000: 24s. Last read position: chr2:215,380,821 INFO 2026-06-03 21:13:30 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:40:23s. Time for last 1,000,000: 51s. Last read position: chr2:215,408,118 INFO 2026-06-03 21:14:52 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:41:45s. Time for last 1,000,000: 82s. Last read position: chr2:216,117,758 INFO 2026-06-03 21:15:06 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:41:59s. Time for last 1,000,000: 13s. Last read position: chr2:218,738,031 INFO 2026-06-03 21:15:13 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:42:06s. Time for last 1,000,000: 7s. Last read position: chr2:219,541,863 INFO 2026-06-03 21:15:30 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:42:23s. Time for last 1,000,000: 16s. Last read position: chr2:230,878,231 INFO 2026-06-03 21:15:48 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:42:41s. Time for last 1,000,000: 18s. Last read position: chr2:237,336,377 INFO 2026-06-03 21:16:19 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:43:11s. Time for last 1,000,000: 30s. Last read position: chr2:237,377,207 INFO 2026-06-03 21:16:38 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:43:31s. Time for last 1,000,000: 19s. Last read position: chr2:241,229,481 INFO 2026-06-03 21:17:01 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:43:54s. Time for last 1,000,000: 23s. Last read position: chr3:9,787,199 INFO 2026-06-03 21:17:13 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:44:06s. Time for last 1,000,000: 11s. Last read position: chr3:13,570,340 INFO 2026-06-03 21:17:20 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:44:13s. Time for last 1,000,000: 7s. Last read position: chr3:25,615,543 INFO 2026-06-03 21:17:34 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:44:27s. Time for last 1,000,000: 13s. Last read position: chr3:37,980,708 INFO 2026-06-03 21:17:56 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:44:49s. Time for last 1,000,000: 22s. Last read position: chr3:42,638,499 INFO 2026-06-03 21:18:07 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:45:00s. Time for last 1,000,000: 11s. Last read position: chr3:47,121,193 INFO 2026-06-03 21:18:24 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:45:17s. Time for last 1,000,000: 16s. Last read position: chr3:48,466,902 INFO 2026-06-03 21:18:59 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:45:52s. Time for last 1,000,000: 34s. Last read position: chr3:48,604,341 INFO 2026-06-03 21:19:15 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:46:07s. Time for last 1,000,000: 15s. Last read position: chr3:49,426,288 INFO 2026-06-03 21:19:27 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:46:20s. Time for last 1,000,000: 12s. Last read position: chr3:51,394,019 INFO 2026-06-03 21:19:41 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:46:34s. Time for last 1,000,000: 14s. Last read position: chr3:52,522,112 INFO 2026-06-03 21:20:02 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:46:55s. Time for last 1,000,000: 20s. Last read position: chr3:58,148,823 INFO 2026-06-03 21:20:33 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:47:26s. Time for last 1,000,000: 31s. Last read position: chr3:85,638,906 INFO 2026-06-03 21:20:58 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:47:51s. Time for last 1,000,000: 25s. Last read position: chr3:101,852,098 INFO 2026-06-03 21:21:14 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:48:07s. Time for last 1,000,000: 15s. Last read position: chr3:119,863,484 INFO 2026-06-03 21:21:25 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:48:17s. Time for last 1,000,000: 10s. Last read position: chr3:122,701,014 INFO 2026-06-03 21:21:39 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:48:32s. Time for last 1,000,000: 14s. Last read position: chr3:127,620,838 INFO 2026-06-03 21:21:57 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:48:50s. Time for last 1,000,000: 18s. Last read position: chr3:129,606,318 INFO 2026-06-03 21:22:21 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:49:14s. Time for last 1,000,000: 23s. Last read position: chr3:139,358,217 INFO 2026-06-03 21:22:41 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:49:34s. Time for last 1,000,000: 20s. Last read position: chr3:149,657,146 INFO 2026-06-03 21:22:59 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:49:52s. Time for last 1,000,000: 17s. Last read position: chr3:160,535,854 INFO 2026-06-03 21:23:20 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:50:13s. Time for last 1,000,000: 20s. Last read position: chr3:183,033,998 INFO 2026-06-03 21:23:59 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:50:52s. Time for last 1,000,000: 38s. Last read position: chr3:184,326,905 INFO 2026-06-03 21:24:35 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:51:28s. Time for last 1,000,000: 36s. Last read position: chr3:189,867,834 INFO 2026-06-03 21:24:59 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:51:52s. Time for last 1,000,000: 24s. Last read position: chr3:196,502,943 INFO 2026-06-03 21:25:33 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:52:26s. Time for last 1,000,000: 33s. Last read position: chr4:1,236,711 INFO 2026-06-03 21:25:55 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:52:48s. Time for last 1,000,000: 21s. Last read position: chr4:2,693,767 INFO 2026-06-03 21:26:25 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:53:18s. Time for last 1,000,000: 30s. Last read position: chr4:6,378,521 INFO 2026-06-03 21:26:39 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:53:32s. Time for last 1,000,000: 14s. Last read position: chr4:15,003,006 INFO 2026-06-03 21:26:55 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:53:48s. Time for last 1,000,000: 15s. Last read position: chr4:37,837,597 INFO 2026-06-03 21:27:11 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:54:04s. Time for last 1,000,000: 15s. Last read position: chr4:48,542,084 INFO 2026-06-03 21:27:29 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:54:22s. Time for last 1,000,000: 18s. Last read position: chr4:57,109,892 INFO 2026-06-03 21:27:43 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:54:36s. Time for last 1,000,000: 14s. Last read position: chr4:74,365,237 INFO 2026-06-03 21:28:01 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:54:54s. Time for last 1,000,000: 17s. Last read position: chr4:82,705,399 INFO 2026-06-03 21:28:37 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:55:30s. Time for last 1,000,000: 36s. Last read position: chr4:88,479,372 INFO 2026-06-03 21:28:59 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:55:52s. Time for last 1,000,000: 21s. Last read position: chr4:107,989,868 INFO 2026-06-03 21:30:01 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:56:53s. Time for last 1,000,000: 61s. Last read position: chr4:122,301,307 INFO 2026-06-03 21:30:17 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:57:10s. Time for last 1,000,000: 16s. Last read position: chr4:146,293,950 INFO 2026-06-03 21:30:44 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:57:37s. Time for last 1,000,000: 27s. Last read position: chr4:159,353,805 INFO 2026-06-03 21:31:06 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:57:59s. Time for last 1,000,000: 21s. Last read position: chr4:184,632,322 INFO 2026-06-03 21:31:24 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:58:17s. Time for last 1,000,000: 18s. Last read position: chr5:1,576,259 INFO 2026-06-03 21:31:55 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:58:48s. Time for last 1,000,000: 30s. Last read position: chr5:14,487,576 INFO 2026-06-03 21:32:19 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:59:12s. Time for last 1,000,000: 24s. Last read position: chr5:37,020,412 INFO 2026-06-03 21:32:38 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:59:31s. Time for last 1,000,000: 18s. Last read position: chr5:55,400,399 INFO 2026-06-03 21:32:58 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:59:50s. Time for last 1,000,000: 19s. Last read position: chr5:69,234,956 INFO 2026-06-03 21:33:12 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 01:00:05s. Time for last 1,000,000: 14s. Last read position: chr5:75,360,036 INFO 2026-06-03 21:33:23 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 01:00:16s. Time for last 1,000,000: 10s. Last read position: chr5:83,512,110 INFO 2026-06-03 21:34:03 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 01:00:56s. Time for last 1,000,000: 40s. Last read position: chr5:96,781,710 INFO 2026-06-03 21:34:13 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 01:01:06s. Time for last 1,000,000: 9s. Last read position: chr5:119,477,416 INFO 2026-06-03 21:34:29 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 01:01:22s. Time for last 1,000,000: 16s. Last read position: chr5:133,980,881 INFO 2026-06-03 21:34:34 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 01:01:27s. Time for last 1,000,000: 5s. Last read position: chr5:135,578,838 INFO 2026-06-03 21:34:46 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 01:01:39s. Time for last 1,000,000: 11s. Last read position: chr5:138,947,260 INFO 2026-06-03 21:34:56 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 01:01:49s. Time for last 1,000,000: 9s. Last read position: chr5:141,389,654 INFO 2026-06-03 21:35:08 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 01:02:01s. Time for last 1,000,000: 12s. Last read position: chr5:143,400,786 INFO 2026-06-03 21:35:25 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 01:02:18s. Time for last 1,000,000: 17s. Last read position: chr5:149,345,534 INFO 2026-06-03 21:35:33 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 01:02:26s. Time for last 1,000,000: 8s. Last read position: chr5:150,297,779 INFO 2026-06-03 21:35:41 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 01:02:34s. Time for last 1,000,000: 7s. Last read position: chr5:150,403,284 INFO 2026-06-03 21:35:50 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 01:02:43s. Time for last 1,000,000: 9s. Last read position: chr5:150,406,902 INFO 2026-06-03 21:35:58 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 01:02:51s. Time for last 1,000,000: 7s. Last read position: chr5:150,698,498 INFO 2026-06-03 21:36:06 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 01:02:59s. Time for last 1,000,000: 8s. Last read position: chr5:151,786,692 INFO 2026-06-03 21:36:18 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 01:03:11s. Time for last 1,000,000: 11s. Last read position: chr5:168,190,425 INFO 2026-06-03 21:36:37 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 01:03:30s. Time for last 1,000,000: 18s. Last read position: chr5:172,096,430 INFO 2026-06-03 21:36:42 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 01:03:35s. Time for last 1,000,000: 5s. Last read position: chr5:177,303,987 INFO 2026-06-03 21:36:53 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 01:03:46s. Time for last 1,000,000: 10s. Last read position: chr5:179,614,867 INFO 2026-06-03 21:37:13 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 01:04:06s. Time for last 1,000,000: 20s. Last read position: chr5:179,870,349 INFO 2026-06-03 21:37:23 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 01:04:16s. Time for last 1,000,000: 9s. Last read position: chr6:3,154,289 INFO 2026-06-03 21:37:29 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 01:04:22s. Time for last 1,000,000: 5s. Last read position: chr6:7,230,993 INFO 2026-06-03 21:37:34 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 01:04:27s. Time for last 1,000,000: 5s. Last read position: chr6:7,571,381 INFO 2026-06-03 21:37:42 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 01:04:35s. Time for last 1,000,000: 7s. Last read position: chr6:7,580,786 INFO 2026-06-03 21:37:51 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 01:04:44s. Time for last 1,000,000: 9s. Last read position: chr6:7,584,845 INFO 2026-06-03 21:37:59 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 01:04:52s. Time for last 1,000,000: 7s. Last read position: chr6:16,146,707 INFO 2026-06-03 21:38:06 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 01:04:59s. Time for last 1,000,000: 7s. Last read position: chr6:26,184,027 INFO 2026-06-03 21:38:09 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 01:05:02s. Time for last 1,000,000: 3s. Last read position: chr6:29,556,292 INFO 2026-06-03 21:38:15 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 01:05:08s. Time for last 1,000,000: 5s. Last read position: chr6:30,489,867 INFO 2026-06-03 21:38:27 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 01:05:20s. Time for last 1,000,000: 11s. Last read position: chr6:30,986,262 INFO 2026-06-03 21:38:30 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 01:05:23s. Time for last 1,000,000: 3s. Last read position: chr6:31,268,982 INFO 2026-06-03 21:38:35 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 01:05:28s. Time for last 1,000,000: 5s. Last read position: chr6:31,627,874 INFO 2026-06-03 21:38:47 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 01:05:40s. Time for last 1,000,000: 12s. Last read position: chr6:31,816,850 INFO 2026-06-03 21:38:53 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 01:05:46s. Time for last 1,000,000: 5s. Last read position: chr6:32,027,701 INFO 2026-06-03 21:39:02 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 01:05:55s. Time for last 1,000,000: 8s. Last read position: chr6:32,580,800 INFO 2026-06-03 21:39:07 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 01:06:00s. Time for last 1,000,000: 5s. Last read position: chr6:32,950,697 INFO 2026-06-03 21:39:15 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 01:06:08s. Time for last 1,000,000: 8s. Last read position: chr6:33,315,551 INFO 2026-06-03 21:39:24 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 01:06:17s. Time for last 1,000,000: 8s. Last read position: chr6:35,424,526 INFO 2026-06-03 21:39:30 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 01:06:23s. Time for last 1,000,000: 5s. Last read position: chr6:41,565,773 INFO 2026-06-03 21:39:38 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 01:06:31s. Time for last 1,000,000: 8s. Last read position: chr6:43,171,983 INFO 2026-06-03 21:39:47 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 01:06:40s. Time for last 1,000,000: 8s. Last read position: chr6:46,867,021 INFO 2026-06-03 21:40:29 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 01:07:22s. Time for last 1,000,000: 42s. Last read position: chr6:56,618,910 INFO 2026-06-03 21:41:16 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 01:08:09s. Time for last 1,000,000: 46s. Last read position: chr6:75,148,403 INFO 2026-06-03 21:41:33 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 01:08:26s. Time for last 1,000,000: 17s. Last read position: chr6:89,080,784 INFO 2026-06-03 21:41:42 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 01:08:35s. Time for last 1,000,000: 8s. Last read position: chr6:106,520,728 INFO 2026-06-03 21:41:53 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 01:08:46s. Time for last 1,000,000: 10s. Last read position: chr6:112,175,368 INFO 2026-06-03 21:42:00 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 01:08:52s. Time for last 1,000,000: 6s. Last read position: chr6:124,963,164 INFO 2026-06-03 21:42:18 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 01:09:11s. Time for last 1,000,000: 18s. Last read position: chr6:136,383,731 INFO 2026-06-03 21:42:23 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 01:09:16s. Time for last 1,000,000: 4s. Last read position: chr6:139,373,555 INFO 2026-06-03 21:42:31 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 01:09:23s. Time for last 1,000,000: 7s. Last read position: chr6:149,683,603 INFO 2026-06-03 21:42:57 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 01:09:49s. Time for last 1,000,000: 25s. Last read position: chr6:157,982,028 INFO 2026-06-03 21:43:02 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 01:09:55s. Time for last 1,000,000: 5s. Last read position: chr6:159,256,620 INFO 2026-06-03 21:43:16 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 01:10:09s. Time for last 1,000,000: 13s. Last read position: chr6:167,875,339 INFO 2026-06-03 21:43:35 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 01:10:28s. Time for last 1,000,000: 19s. Last read position: chr7:1,158,241 INFO 2026-06-03 21:43:43 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 01:10:36s. Time for last 1,000,000: 7s. Last read position: chr7:5,313,577 INFO 2026-06-03 21:43:52 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 01:10:45s. Time for last 1,000,000: 9s. Last read position: chr7:5,528,694 INFO 2026-06-03 21:44:00 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 01:10:53s. Time for last 1,000,000: 8s. Last read position: chr7:8,003,956 INFO 2026-06-03 21:44:17 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 01:11:10s. Time for last 1,000,000: 16s. Last read position: chr7:26,200,477 INFO 2026-06-03 21:44:29 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 01:11:22s. Time for last 1,000,000: 12s. Last read position: chr7:40,134,433 INFO 2026-06-03 21:44:37 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 01:11:30s. Time for last 1,000,000: 8s. Last read position: chr7:44,693,837 INFO 2026-06-03 21:44:48 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 01:11:41s. Time for last 1,000,000: 10s. Last read position: chr7:55,160,231 INFO 2026-06-03 21:44:58 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 01:11:51s. Time for last 1,000,000: 9s. Last read position: chr7:72,942,217 INFO 2026-06-03 21:45:08 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 01:12:01s. Time for last 1,000,000: 9s. Last read position: chr7:74,758,804 INFO 2026-06-03 21:45:14 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 01:12:07s. Time for last 1,000,000: 6s. Last read position: chr7:76,302,873 INFO 2026-06-03 21:45:21 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 01:12:14s. Time for last 1,000,000: 6s. Last read position: chr7:76,980,760 INFO 2026-06-03 21:45:55 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 01:12:48s. Time for last 1,000,000: 33s. Last read position: chr7:92,579,394 INFO 2026-06-03 21:46:05 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 01:12:58s. Time for last 1,000,000: 10s. Last read position: chr7:94,425,181 INFO 2026-06-03 21:46:25 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 01:13:18s. Time for last 1,000,000: 19s. Last read position: chr7:99,967,051 INFO 2026-06-03 21:46:34 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 01:13:26s. Time for last 1,000,000: 8s. Last read position: chr7:100,868,214 INFO 2026-06-03 21:46:43 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 01:13:36s. Time for last 1,000,000: 9s. Last read position: chr7:102,567,874 INFO 2026-06-03 21:46:57 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 01:13:50s. Time for last 1,000,000: 14s. Last read position: chr7:107,935,598 INFO 2026-06-03 21:47:21 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 01:14:14s. Time for last 1,000,000: 23s. Last read position: chr7:127,588,403 INFO 2026-06-03 21:47:29 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 01:14:22s. Time for last 1,000,000: 8s. Last read position: chr7:128,854,669 INFO 2026-06-03 21:47:38 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 01:14:31s. Time for last 1,000,000: 9s. Last read position: chr7:135,604,422 INFO 2026-06-03 21:47:48 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 01:14:41s. Time for last 1,000,000: 9s. Last read position: chr7:141,779,085 INFO 2026-06-03 21:47:53 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 01:14:46s. Time for last 1,000,000: 5s. Last read position: chr7:148,827,235 INFO 2026-06-03 21:48:00 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 01:14:53s. Time for last 1,000,000: 7s. Last read position: chr7:151,082,285 INFO 2026-06-03 21:48:19 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 01:15:12s. Time for last 1,000,000: 19s. Last read position: chr8:673,340 INFO 2026-06-03 21:48:33 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 01:15:26s. Time for last 1,000,000: 14s. Last read position: chr8:11,847,804 INFO 2026-06-03 21:48:55 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 01:15:48s. Time for last 1,000,000: 21s. Last read position: chr8:22,180,433 INFO 2026-06-03 21:49:05 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 01:15:58s. Time for last 1,000,000: 10s. Last read position: chr8:26,383,159 INFO 2026-06-03 21:49:14 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 01:16:07s. Time for last 1,000,000: 8s. Last read position: chr8:37,829,917 INFO 2026-06-03 21:49:31 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 01:16:24s. Time for last 1,000,000: 16s. Last read position: chr8:41,609,433 INFO 2026-06-03 21:49:45 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 01:16:38s. Time for last 1,000,000: 13s. Last read position: chr8:51,861,075 INFO 2026-06-03 21:49:56 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 01:16:49s. Time for last 1,000,000: 11s. Last read position: chr8:67,200,396 INFO 2026-06-03 21:50:04 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 01:16:57s. Time for last 1,000,000: 7s. Last read position: chr8:81,280,641 INFO 2026-06-03 21:50:11 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 01:17:04s. Time for last 1,000,000: 6s. Last read position: chr8:94,849,932 INFO 2026-06-03 21:50:28 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 01:17:21s. Time for last 1,000,000: 16s. Last read position: chr8:100,712,695 INFO 2026-06-03 21:50:54 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 01:17:46s. Time for last 1,000,000: 25s. Last read position: chr8:103,325,223 INFO 2026-06-03 21:51:06 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 01:17:59s. Time for last 1,000,000: 12s. Last read position: chr8:120,310,026 INFO 2026-06-03 21:51:13 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 01:18:06s. Time for last 1,000,000: 7s. Last read position: chr8:127,738,456 INFO 2026-06-03 21:51:31 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 01:18:24s. Time for last 1,000,000: 17s. Last read position: chr8:133,264,638 INFO 2026-06-03 21:51:42 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 01:18:35s. Time for last 1,000,000: 11s. Last read position: chr8:142,765,051 INFO 2026-06-03 21:51:49 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 01:18:42s. Time for last 1,000,000: 7s. Last read position: chr8:143,580,682 INFO 2026-06-03 21:52:00 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 01:18:53s. Time for last 1,000,000: 11s. Last read position: chr8:143,858,179 INFO 2026-06-03 21:52:01 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 01:18:54s. Time for last 1,000,000: 0s. Last read position: chr8:143,858,869 INFO 2026-06-03 21:52:02 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 01:18:55s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,879 INFO 2026-06-03 21:52:03 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 01:18:56s. Time for last 1,000,000: 0s. Last read position: chr8:143,860,725 INFO 2026-06-03 21:52:04 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 01:18:57s. Time for last 1,000,000: 0s. Last read position: chr8:143,861,502 INFO 2026-06-03 21:52:04 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 01:18:57s. Time for last 1,000,000: 0s. Last read position: chr8:143,862,219 INFO 2026-06-03 21:52:06 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 01:18:59s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,046 INFO 2026-06-03 21:52:07 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 01:19:00s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,820 INFO 2026-06-03 21:52:08 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 01:19:01s. Time for last 1,000,000: 0s. Last read position: chr8:143,864,777 INFO 2026-06-03 21:52:09 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 01:19:02s. Time for last 1,000,000: 0s. Last read position: chr8:143,865,780 INFO 2026-06-03 21:52:09 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 01:19:02s. Time for last 1,000,000: 0s. Last read position: chr8:143,866,408 INFO 2026-06-03 21:52:11 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 01:19:04s. Time for last 1,000,000: 1s. Last read position: chr8:143,871,102 INFO 2026-06-03 21:52:16 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 01:19:08s. Time for last 1,000,000: 4s. Last read position: chr8:143,920,724 INFO 2026-06-03 21:52:27 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 01:19:20s. Time for last 1,000,000: 11s. Last read position: chr8:143,932,884 INFO 2026-06-03 21:52:47 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 01:19:40s. Time for last 1,000,000: 19s. Last read position: chr8:144,318,528 INFO 2026-06-03 21:52:58 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 01:19:51s. Time for last 1,000,000: 11s. Last read position: chr9:711,207 INFO 2026-06-03 21:53:12 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 01:20:05s. Time for last 1,000,000: 13s. Last read position: chr9:5,743,001 INFO 2026-06-03 21:53:28 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 01:20:21s. Time for last 1,000,000: 16s. Last read position: chr9:14,619,644 INFO 2026-06-03 21:53:38 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 01:20:31s. Time for last 1,000,000: 9s. Last read position: chr9:32,987,670 INFO 2026-06-03 21:53:43 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 01:20:36s. Time for last 1,000,000: 4s. Last read position: chr9:33,462,692 INFO 2026-06-03 21:53:55 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 01:20:48s. Time for last 1,000,000: 12s. Last read position: chr9:35,682,028 INFO 2026-06-03 21:54:02 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 01:20:55s. Time for last 1,000,000: 6s. Last read position: chr9:40,265,161 INFO 2026-06-03 21:54:11 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 01:21:04s. Time for last 1,000,000: 8s. Last read position: chr9:73,162,809 INFO 2026-06-03 21:54:22 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 01:21:15s. Time for last 1,000,000: 11s. Last read position: chr9:84,810,568 INFO 2026-06-03 21:54:33 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 01:21:26s. Time for last 1,000,000: 10s. Last read position: chr9:92,764,641 INFO 2026-06-03 21:54:40 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 01:21:33s. Time for last 1,000,000: 6s. Last read position: chr9:99,044,746 INFO 2026-06-03 21:54:52 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 01:21:45s. Time for last 1,000,000: 11s. Last read position: chr9:109,073,392 INFO 2026-06-03 21:55:01 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 01:21:54s. Time for last 1,000,000: 9s. Last read position: chr9:114,301,483 INFO 2026-06-03 21:55:17 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 01:22:10s. Time for last 1,000,000: 15s. Last read position: chr9:115,073,780 INFO 2026-06-03 21:55:40 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 01:22:33s. Time for last 1,000,000: 23s. Last read position: chr9:120,778,427 INFO 2026-06-03 21:55:51 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 01:22:44s. Time for last 1,000,000: 10s. Last read position: chr9:124,810,182 INFO 2026-06-03 21:56:02 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 01:22:55s. Time for last 1,000,000: 11s. Last read position: chr9:127,788,550 INFO 2026-06-03 21:56:14 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 01:23:07s. Time for last 1,000,000: 11s. Last read position: chr9:128,585,789 INFO 2026-06-03 21:56:29 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 01:23:22s. Time for last 1,000,000: 15s. Last read position: chr9:130,579,725 INFO 2026-06-03 21:56:37 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 01:23:30s. Time for last 1,000,000: 8s. Last read position: chr9:132,336,300 INFO 2026-06-03 21:56:46 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 01:23:38s. Time for last 1,000,000: 8s. Last read position: chr9:134,786,029 INFO 2026-06-03 21:57:01 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 01:23:54s. Time for last 1,000,000: 15s. Last read position: chr9:136,515,612 INFO 2026-06-03 21:57:13 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 01:24:06s. Time for last 1,000,000: 12s. Last read position: chr9:137,241,302 INFO 2026-06-03 21:57:26 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 01:24:19s. Time for last 1,000,000: 12s. Last read position: chr10:5,452,388 INFO 2026-06-03 21:57:30 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 01:24:23s. Time for last 1,000,000: 3s. Last read position: chr10:5,746,710 INFO 2026-06-03 21:57:39 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 01:24:32s. Time for last 1,000,000: 8s. Last read position: chr10:17,230,679 INFO 2026-06-03 21:57:52 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 01:24:45s. Time for last 1,000,000: 13s. Last read position: chr10:28,899,011 INFO 2026-06-03 21:58:06 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 01:24:59s. Time for last 1,000,000: 14s. Last read position: chr10:33,213,447 INFO 2026-06-03 21:58:14 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 01:25:07s. Time for last 1,000,000: 7s. Last read position: chr10:46,011,182 INFO 2026-06-03 21:58:18 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 01:25:11s. Time for last 1,000,000: 4s. Last read position: chr10:48,743,176 INFO 2026-06-03 21:58:27 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 01:25:20s. Time for last 1,000,000: 8s. Last read position: chr10:63,207,039 INFO 2026-06-03 21:58:37 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 01:25:30s. Time for last 1,000,000: 10s. Last read position: chr10:71,511,125 INFO 2026-06-03 21:58:49 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 01:25:42s. Time for last 1,000,000: 12s. Last read position: chr10:74,043,148 INFO 2026-06-03 21:59:04 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 01:25:57s. Time for last 1,000,000: 14s. Last read position: chr10:80,170,865 INFO 2026-06-03 21:59:09 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 01:26:02s. Time for last 1,000,000: 5s. Last read position: chr10:89,338,835 INFO 2026-06-03 21:59:22 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 01:26:15s. Time for last 1,000,000: 13s. Last read position: chr10:95,842,385 INFO 2026-06-03 21:59:31 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 01:26:24s. Time for last 1,000,000: 9s. Last read position: chr10:100,356,541 INFO 2026-06-03 21:59:52 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 01:26:45s. Time for last 1,000,000: 20s. Last read position: chr10:102,657,276 INFO 2026-06-03 22:00:03 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 01:26:56s. Time for last 1,000,000: 11s. Last read position: chr10:104,064,473 INFO 2026-06-03 22:00:16 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 01:27:09s. Time for last 1,000,000: 12s. Last read position: chr10:116,698,688 INFO 2026-06-03 22:00:26 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 01:27:19s. Time for last 1,000,000: 9s. Last read position: chr10:122,088,462 INFO 2026-06-03 22:00:34 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 01:27:27s. Time for last 1,000,000: 8s. Last read position: chr10:132,405,745 INFO 2026-06-03 22:00:42 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 01:27:35s. Time for last 1,000,000: 8s. Last read position: chr11:320,584 INFO 2026-06-03 22:00:52 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 01:27:45s. Time for last 1,000,000: 9s. Last read position: chr11:722,691 INFO 2026-06-03 22:01:03 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 01:27:56s. Time for last 1,000,000: 11s. Last read position: chr11:1,926,696 INFO 2026-06-03 22:01:17 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 01:28:10s. Time for last 1,000,000: 14s. Last read position: chr11:6,223,675 INFO 2026-06-03 22:01:32 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 01:28:25s. Time for last 1,000,000: 14s. Last read position: chr11:10,306,343 INFO 2026-06-03 22:01:44 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 01:28:37s. Time for last 1,000,000: 12s. Last read position: chr11:17,301,783 INFO 2026-06-03 22:01:54 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 01:28:47s. Time for last 1,000,000: 9s. Last read position: chr11:34,076,337 INFO 2026-06-03 22:02:07 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 01:28:59s. Time for last 1,000,000: 12s. Last read position: chr11:45,915,702 INFO 2026-06-03 22:02:21 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 01:29:14s. Time for last 1,000,000: 14s. Last read position: chr11:47,622,688 INFO 2026-06-03 22:02:28 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 01:29:21s. Time for last 1,000,000: 7s. Last read position: chr11:57,698,981 INFO 2026-06-03 22:02:45 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 01:29:38s. Time for last 1,000,000: 17s. Last read position: chr11:60,903,826 INFO 2026-06-03 22:02:59 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 01:29:52s. Time for last 1,000,000: 13s. Last read position: chr11:62,518,115 INFO 2026-06-03 22:03:03 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 01:29:56s. Time for last 1,000,000: 3s. Last read position: chr11:62,527,210 INFO 2026-06-03 22:03:07 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 01:29:59s. Time for last 1,000,000: 3s. Last read position: chr11:62,572,646 INFO 2026-06-03 22:03:20 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 01:30:13s. Time for last 1,000,000: 13s. Last read position: chr11:63,764,302 INFO 2026-06-03 22:03:29 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 01:30:22s. Time for last 1,000,000: 8s. Last read position: chr11:64,765,430 INFO 2026-06-03 22:03:40 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 01:30:32s. Time for last 1,000,000: 10s. Last read position: chr11:65,210,858 INFO 2026-06-03 22:03:49 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 01:30:42s. Time for last 1,000,000: 9s. Last read position: chr11:65,649,347 INFO 2026-06-03 22:03:58 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 01:30:51s. Time for last 1,000,000: 9s. Last read position: chr11:66,220,729 INFO 2026-06-03 22:04:09 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 01:31:02s. Time for last 1,000,000: 11s. Last read position: chr11:67,070,484 INFO 2026-06-03 22:04:19 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 01:31:12s. Time for last 1,000,000: 9s. Last read position: chr11:67,612,381 INFO 2026-06-03 22:04:30 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 01:31:23s. Time for last 1,000,000: 10s. Last read position: chr11:70,429,118 INFO 2026-06-03 22:04:51 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 01:31:44s. Time for last 1,000,000: 20s. Last read position: chr11:73,309,887 INFO 2026-06-03 22:05:02 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 01:31:55s. Time for last 1,000,000: 10s. Last read position: chr11:77,323,332 INFO 2026-06-03 22:05:14 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 01:32:07s. Time for last 1,000,000: 12s. Last read position: chr11:93,168,075 INFO 2026-06-03 22:05:21 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 01:32:14s. Time for last 1,000,000: 6s. Last read position: chr11:102,186,085 INFO 2026-06-03 22:05:31 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 01:32:24s. Time for last 1,000,000: 10s. Last read position: chr11:111,908,776 INFO 2026-06-03 22:05:42 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 01:32:35s. Time for last 1,000,000: 10s. Last read position: chr11:117,918,456 INFO 2026-06-03 22:05:52 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 01:32:44s. Time for last 1,000,000: 9s. Last read position: chr11:118,908,489 INFO 2026-06-03 22:06:01 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 01:32:54s. Time for last 1,000,000: 9s. Last read position: chr11:120,118,307 INFO 2026-06-03 22:06:13 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 01:33:06s. Time for last 1,000,000: 11s. Last read position: chr11:123,057,702 INFO 2026-06-03 22:06:23 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 01:33:16s. Time for last 1,000,000: 10s. Last read position: chr11:128,694,101 INFO 2026-06-03 22:06:31 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 01:33:24s. Time for last 1,000,000: 7s. Last read position: chr12:355,206 INFO 2026-06-03 22:06:52 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 01:33:45s. Time for last 1,000,000: 21s. Last read position: chr12:2,801,347 INFO 2026-06-03 22:07:03 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 01:33:56s. Time for last 1,000,000: 10s. Last read position: chr12:6,386,405 INFO 2026-06-03 22:07:27 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 01:34:20s. Time for last 1,000,000: 24s. Last read position: chr12:6,936,300 INFO 2026-06-03 22:07:37 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 01:34:30s. Time for last 1,000,000: 10s. Last read position: chr12:7,487,629 INFO 2026-06-03 22:07:47 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 01:34:39s. Time for last 1,000,000: 9s. Last read position: chr12:9,091,236 INFO 2026-06-03 22:07:53 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 01:34:46s. Time for last 1,000,000: 6s. Last read position: chr12:13,213,757 INFO 2026-06-03 22:08:02 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 01:34:55s. Time for last 1,000,000: 9s. Last read position: chr12:26,964,651 INFO 2026-06-03 22:08:14 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 01:35:07s. Time for last 1,000,000: 11s. Last read position: chr12:43,800,498 INFO 2026-06-03 22:08:29 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 01:35:22s. Time for last 1,000,000: 14s. Last read position: chr12:48,694,410 INFO 2026-06-03 22:08:36 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 01:35:29s. Time for last 1,000,000: 7s. Last read position: chr12:49,128,538 INFO 2026-06-03 22:08:44 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 01:35:37s. Time for last 1,000,000: 8s. Last read position: chr12:49,792,483 INFO 2026-06-03 22:08:53 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 01:35:46s. Time for last 1,000,000: 9s. Last read position: chr12:52,054,726 INFO 2026-06-03 22:08:57 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 01:35:50s. Time for last 1,000,000: 4s. Last read position: chr12:52,447,307 INFO 2026-06-03 22:08:59 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 01:35:52s. Time for last 1,000,000: 1s. Last read position: chr12:52,448,920 INFO 2026-06-03 22:09:01 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 01:35:54s. Time for last 1,000,000: 1s. Last read position: chr12:52,451,617 INFO 2026-06-03 22:09:02 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 01:35:55s. Time for last 1,000,000: 1s. Last read position: chr12:52,451,776 INFO 2026-06-03 22:09:04 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 01:35:57s. Time for last 1,000,000: 1s. Last read position: chr12:52,451,985 INFO 2026-06-03 22:09:05 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 01:35:58s. Time for last 1,000,000: 1s. Last read position: chr12:52,470,505 INFO 2026-06-03 22:09:07 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 01:36:00s. Time for last 1,000,000: 2s. Last read position: chr12:52,473,275 INFO 2026-06-03 22:09:08 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 01:36:01s. Time for last 1,000,000: 0s. Last read position: chr12:52,473,418 INFO 2026-06-03 22:09:09 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 01:36:02s. Time for last 1,000,000: 1s. Last read position: chr12:52,473,650 INFO 2026-06-03 22:09:11 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 01:36:04s. Time for last 1,000,000: 2s. Last read position: chr12:52,487,881 INFO 2026-06-03 22:09:14 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 01:36:07s. Time for last 1,000,000: 2s. Last read position: chr12:52,488,408 INFO 2026-06-03 22:09:17 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 01:36:10s. Time for last 1,000,000: 2s. Last read position: chr12:52,490,631 INFO 2026-06-03 22:09:20 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 01:36:13s. Time for last 1,000,000: 3s. Last read position: chr12:52,491,634 INFO 2026-06-03 22:09:24 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 01:36:17s. Time for last 1,000,000: 3s. Last read position: chr12:52,492,826 INFO 2026-06-03 22:09:27 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 01:36:20s. Time for last 1,000,000: 3s. Last read position: chr12:52,492,934 INFO 2026-06-03 22:09:30 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 01:36:23s. Time for last 1,000,000: 3s. Last read position: chr12:52,493,128 INFO 2026-06-03 22:09:34 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 01:36:27s. Time for last 1,000,000: 4s. Last read position: chr12:52,517,114 INFO 2026-06-03 22:09:41 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 01:36:34s. Time for last 1,000,000: 6s. Last read position: chr12:52,519,869 INFO 2026-06-03 22:09:45 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 01:36:38s. Time for last 1,000,000: 4s. Last read position: chr12:52,678,189 INFO 2026-06-03 22:09:52 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 01:36:45s. Time for last 1,000,000: 6s. Last read position: chr12:53,170,080 INFO 2026-06-03 22:10:05 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 01:36:58s. Time for last 1,000,000: 12s. Last read position: chr12:54,281,862 INFO 2026-06-03 22:10:20 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 01:37:13s. Time for last 1,000,000: 14s. Last read position: chr12:55,940,421 INFO 2026-06-03 22:10:34 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 01:37:27s. Time for last 1,000,000: 13s. Last read position: chr12:56,326,321 INFO 2026-06-03 22:10:51 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 01:37:44s. Time for last 1,000,000: 17s. Last read position: chr12:56,716,544 INFO 2026-06-03 22:11:10 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 01:38:03s. Time for last 1,000,000: 19s. Last read position: chr12:57,143,744 INFO 2026-06-03 22:11:25 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 01:38:18s. Time for last 1,000,000: 14s. Last read position: chr12:57,488,138 INFO 2026-06-03 22:11:40 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 01:38:33s. Time for last 1,000,000: 15s. Last read position: chr12:62,801,817 INFO 2026-06-03 22:11:50 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 01:38:43s. Time for last 1,000,000: 10s. Last read position: chr12:69,239,690 INFO 2026-06-03 22:12:02 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 01:38:55s. Time for last 1,000,000: 11s. Last read position: chr12:76,764,278 INFO 2026-06-03 22:12:11 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 01:39:04s. Time for last 1,000,000: 8s. Last read position: chr12:95,474,197 INFO 2026-06-03 22:12:29 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 01:39:22s. Time for last 1,000,000: 18s. Last read position: chr12:104,265,638 INFO 2026-06-03 22:12:37 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 01:39:30s. Time for last 1,000,000: 8s. Last read position: chr12:109,534,730 INFO 2026-06-03 22:12:49 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 01:39:42s. Time for last 1,000,000: 11s. Last read position: chr12:112,022,451 INFO 2026-06-03 22:13:12 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 01:40:05s. Time for last 1,000,000: 22s. Last read position: chr12:112,978,672 INFO 2026-06-03 22:13:24 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 01:40:17s. Time for last 1,000,000: 12s. Last read position: chr12:119,193,764 INFO 2026-06-03 22:13:35 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 01:40:28s. Time for last 1,000,000: 10s. Last read position: chr12:121,318,604 INFO 2026-06-03 22:13:47 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 01:40:40s. Time for last 1,000,000: 12s. Last read position: chr12:122,981,847 INFO 2026-06-03 22:14:01 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 01:40:54s. Time for last 1,000,000: 13s. Last read position: chr12:127,568,886 INFO 2026-06-03 22:14:09 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 01:41:02s. Time for last 1,000,000: 7s. Last read position: chr12:132,796,646 INFO 2026-06-03 22:14:14 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 01:41:07s. Time for last 1,000,000: 5s. Last read position: chr13:20,189,008 INFO 2026-06-03 22:14:18 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 01:41:11s. Time for last 1,000,000: 3s. Last read position: chr13:26,349,075 INFO 2026-06-03 22:14:28 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 01:41:21s. Time for last 1,000,000: 10s. Last read position: chr13:39,601,024 INFO 2026-06-03 22:14:35 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 01:41:28s. Time for last 1,000,000: 7s. Last read position: chr13:48,233,438 INFO 2026-06-03 22:14:43 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 01:41:36s. Time for last 1,000,000: 7s. Last read position: chr13:75,804,431 INFO 2026-06-03 22:15:00 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 01:41:52s. Time for last 1,000,000: 16s. Last read position: chr13:97,997,520 INFO 2026-06-03 22:15:17 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 01:42:10s. Time for last 1,000,000: 17s. Last read position: chr13:110,205,506 INFO 2026-06-03 22:15:30 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 01:42:23s. Time for last 1,000,000: 12s. Last read position: chr13:113,406,027 INFO 2026-06-03 22:15:49 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 01:42:42s. Time for last 1,000,000: 19s. Last read position: chr14:21,363,239 INFO 2026-06-03 22:16:00 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 01:42:53s. Time for last 1,000,000: 11s. Last read position: chr14:23,079,613 INFO 2026-06-03 22:16:10 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 01:43:03s. Time for last 1,000,000: 9s. Last read position: chr14:24,165,919 INFO 2026-06-03 22:16:18 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 01:43:11s. Time for last 1,000,000: 8s. Last read position: chr14:24,325,826 INFO 2026-06-03 22:16:37 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 01:43:29s. Time for last 1,000,000: 18s. Last read position: chr14:35,292,515 INFO 2026-06-03 22:16:44 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 01:43:37s. Time for last 1,000,000: 7s. Last read position: chr14:49,862,578 INFO 2026-06-03 22:16:53 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 01:43:45s. Time for last 1,000,000: 8s. Last read position: chr14:54,902,539 INFO 2026-06-03 22:17:07 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 01:44:00s. Time for last 1,000,000: 14s. Last read position: chr14:63,204,993 INFO 2026-06-03 22:17:50 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 01:44:43s. Time for last 1,000,000: 42s. Last read position: chr14:67,571,846 INFO 2026-06-03 22:18:03 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 01:44:56s. Time for last 1,000,000: 12s. Last read position: chr14:70,800,901 INFO 2026-06-03 22:18:14 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 01:45:07s. Time for last 1,000,000: 11s. Last read position: chr14:74,552,231 INFO 2026-06-03 22:18:23 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 01:45:16s. Time for last 1,000,000: 9s. Last read position: chr14:77,459,711 INFO 2026-06-03 22:18:31 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 01:45:24s. Time for last 1,000,000: 8s. Last read position: chr14:92,000,098 INFO 2026-06-03 22:18:39 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 01:45:32s. Time for last 1,000,000: 8s. Last read position: chr14:95,103,453 INFO 2026-06-03 22:18:59 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 01:45:52s. Time for last 1,000,000: 19s. Last read position: chr14:101,994,763 INFO 2026-06-03 22:20:46 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 01:47:39s. Time for last 1,000,000: 106s. Last read position: chr14:103,133,482 INFO 2026-06-03 22:21:09 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 01:48:02s. Time for last 1,000,000: 23s. Last read position: chr14:104,940,273 INFO 2026-06-03 22:21:12 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 01:48:04s. Time for last 1,000,000: 2s. Last read position: chr14:104,946,494 INFO 2026-06-03 22:21:14 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 01:48:07s. Time for last 1,000,000: 2s. Last read position: chr14:104,952,975 INFO 2026-06-03 22:21:19 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 01:48:12s. Time for last 1,000,000: 5s. Last read position: chr14:105,741,509 INFO 2026-06-03 22:21:42 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 01:48:35s. Time for last 1,000,000: 22s. Last read position: chr15:28,115,519 INFO 2026-06-03 22:21:51 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 01:48:44s. Time for last 1,000,000: 8s. Last read position: chr15:33,153,202 INFO 2026-06-03 22:21:59 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 01:48:52s. Time for last 1,000,000: 7s. Last read position: chr15:40,105,916 INFO 2026-06-03 22:22:08 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 01:49:01s. Time for last 1,000,000: 9s. Last read position: chr15:41,953,844 INFO 2026-06-03 22:22:18 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 01:49:11s. Time for last 1,000,000: 9s. Last read position: chr15:43,694,039 INFO 2026-06-03 22:22:26 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 01:49:19s. Time for last 1,000,000: 8s. Last read position: chr15:45,142,036 INFO 2026-06-03 22:22:39 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 01:49:32s. Time for last 1,000,000: 13s. Last read position: chr15:52,046,476 INFO 2026-06-03 22:22:52 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 01:49:45s. Time for last 1,000,000: 12s. Last read position: chr15:60,349,119 INFO 2026-06-03 22:23:13 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 01:50:06s. Time for last 1,000,000: 21s. Last read position: chr15:64,675,598 INFO 2026-06-03 22:23:22 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 01:50:15s. Time for last 1,000,000: 8s. Last read position: chr15:70,095,578 INFO 2026-06-03 22:23:34 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 01:50:27s. Time for last 1,000,000: 12s. Last read position: chr15:74,023,022 INFO 2026-06-03 22:23:47 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 01:50:40s. Time for last 1,000,000: 12s. Last read position: chr15:75,356,416 INFO 2026-06-03 22:23:59 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 01:50:52s. Time for last 1,000,000: 12s. Last read position: chr15:79,313,807 INFO 2026-06-03 22:24:04 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 01:50:57s. Time for last 1,000,000: 5s. Last read position: chr15:85,579,299 INFO 2026-06-03 22:24:16 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 01:51:09s. Time for last 1,000,000: 11s. Last read position: chr15:90,068,298 INFO 2026-06-03 22:24:29 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 01:51:22s. Time for last 1,000,000: 12s. Last read position: chr15:94,356,277 INFO 2026-06-03 22:24:37 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 01:51:30s. Time for last 1,000,000: 7s. Last read position: chr16:547,210 INFO 2026-06-03 22:24:47 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 01:51:40s. Time for last 1,000,000: 9s. Last read position: chr16:1,494,266 INFO 2026-06-03 22:25:12 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 01:52:05s. Time for last 1,000,000: 24s. Last read position: chr16:2,111,015 INFO 2026-06-03 22:25:24 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 01:52:17s. Time for last 1,000,000: 11s. Last read position: chr16:2,764,943 INFO 2026-06-03 22:25:35 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 01:52:28s. Time for last 1,000,000: 11s. Last read position: chr16:3,413,053 INFO 2026-06-03 22:25:47 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 01:52:39s. Time for last 1,000,000: 11s. Last read position: chr16:4,884,295 INFO 2026-06-03 22:25:56 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 01:52:49s. Time for last 1,000,000: 9s. Last read position: chr16:10,915,622 INFO 2026-06-03 22:26:04 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 01:52:57s. Time for last 1,000,000: 8s. Last read position: chr16:14,926,183 INFO 2026-06-03 22:26:17 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 01:53:10s. Time for last 1,000,000: 12s. Last read position: chr16:16,324,888 INFO 2026-06-03 22:26:21 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 01:53:14s. Time for last 1,000,000: 4s. Last read position: chr16:18,783,044 INFO 2026-06-03 22:26:29 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 01:53:22s. Time for last 1,000,000: 7s. Last read position: chr16:21,453,045 INFO 2026-06-03 22:26:33 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 01:53:26s. Time for last 1,000,000: 4s. Last read position: chr16:22,527,651 INFO 2026-06-03 22:26:40 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 01:53:33s. Time for last 1,000,000: 7s. Last read position: chr16:27,363,569 INFO 2026-06-03 22:26:53 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 01:53:46s. Time for last 1,000,000: 12s. Last read position: chr16:28,836,789 INFO 2026-06-03 22:26:56 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 01:53:49s. Time for last 1,000,000: 3s. Last read position: chr16:29,551,285 INFO 2026-06-03 22:27:07 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 01:54:00s. Time for last 1,000,000: 10s. Last read position: chr16:30,187,995 INFO 2026-06-03 22:27:11 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 01:54:04s. Time for last 1,000,000: 4s. Last read position: chr16:30,720,882 INFO 2026-06-03 22:27:19 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 01:54:12s. Time for last 1,000,000: 7s. Last read position: chr16:31,189,135 INFO 2026-06-03 22:27:27 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 01:54:20s. Time for last 1,000,000: 8s. Last read position: chr16:50,304,382 INFO 2026-06-03 22:27:37 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 01:54:30s. Time for last 1,000,000: 10s. Last read position: chr16:56,609,277 INFO 2026-06-03 22:27:57 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 01:54:50s. Time for last 1,000,000: 19s. Last read position: chr16:58,115,320 INFO 2026-06-03 22:28:09 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 01:55:02s. Time for last 1,000,000: 12s. Last read position: chr16:67,280,191 INFO 2026-06-03 22:28:22 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 01:55:15s. Time for last 1,000,000: 12s. Last read position: chr16:68,676,448 INFO 2026-06-03 22:28:31 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 01:55:24s. Time for last 1,000,000: 8s. Last read position: chr16:70,259,114 INFO 2026-06-03 22:28:45 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 01:55:38s. Time for last 1,000,000: 13s. Last read position: chr16:74,893,731 INFO 2026-06-03 22:28:53 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 01:55:45s. Time for last 1,000,000: 7s. Last read position: chr16:84,179,558 INFO 2026-06-03 22:28:59 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 01:55:52s. Time for last 1,000,000: 6s. Last read position: chr16:88,432,571 INFO 2026-06-03 22:29:07 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 01:56:00s. Time for last 1,000,000: 8s. Last read position: chr16:89,280,883 INFO 2026-06-03 22:29:29 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 01:56:22s. Time for last 1,000,000: 21s. Last read position: chr17:714,630 INFO 2026-06-03 22:29:40 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 01:56:33s. Time for last 1,000,000: 10s. Last read position: chr17:1,662,132 INFO 2026-06-03 22:29:51 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 01:56:44s. Time for last 1,000,000: 10s. Last read position: chr17:3,728,137 INFO 2026-06-03 22:30:01 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 01:56:54s. Time for last 1,000,000: 10s. Last read position: chr17:4,891,088 INFO 2026-06-03 22:30:13 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 01:57:06s. Time for last 1,000,000: 12s. Last read position: chr17:6,620,917 INFO 2026-06-03 22:30:26 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 01:57:18s. Time for last 1,000,000: 12s. Last read position: chr17:7,343,889 INFO 2026-06-03 22:30:34 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 01:57:27s. Time for last 1,000,000: 8s. Last read position: chr17:7,579,713 INFO 2026-06-03 22:30:45 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 01:57:38s. Time for last 1,000,000: 10s. Last read position: chr17:8,238,447 INFO 2026-06-03 22:30:52 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 01:57:45s. Time for last 1,000,000: 7s. Last read position: chr17:10,525,586 INFO 2026-06-03 22:31:05 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 01:57:58s. Time for last 1,000,000: 12s. Last read position: chr17:16,117,901 INFO 2026-06-03 22:31:14 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 01:58:07s. Time for last 1,000,000: 9s. Last read position: chr17:17,823,597 INFO 2026-06-03 22:31:23 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 01:58:16s. Time for last 1,000,000: 9s. Last read position: chr17:19,003,721 INFO 2026-06-03 22:31:32 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 01:58:25s. Time for last 1,000,000: 8s. Last read position: chr17:27,646,547 INFO 2026-06-03 22:31:47 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 01:58:40s. Time for last 1,000,000: 15s. Last read position: chr17:29,204,196 INFO 2026-06-03 22:31:59 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 01:58:52s. Time for last 1,000,000: 11s. Last read position: chr17:32,605,088 INFO 2026-06-03 22:32:06 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 01:58:59s. Time for last 1,000,000: 7s. Last read position: chr17:36,486,702 INFO 2026-06-03 22:32:16 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 01:59:09s. Time for last 1,000,000: 9s. Last read position: chr17:38,724,835 INFO 2026-06-03 22:32:29 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 01:59:22s. Time for last 1,000,000: 13s. Last read position: chr17:39,725,177 INFO 2026-06-03 22:32:39 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 01:59:32s. Time for last 1,000,000: 10s. Last read position: chr17:40,645,576 INFO 2026-06-03 22:32:45 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 01:59:38s. Time for last 1,000,000: 5s. Last read position: chr17:41,505,422 INFO 2026-06-03 22:32:48 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 01:59:41s. Time for last 1,000,000: 2s. Last read position: chr17:41,583,094 INFO 2026-06-03 22:32:51 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 01:59:44s. Time for last 1,000,000: 2s. Last read position: chr17:41,583,397 INFO 2026-06-03 22:32:53 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 01:59:46s. Time for last 1,000,000: 2s. Last read position: chr17:41,583,778 INFO 2026-06-03 22:32:56 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 01:59:49s. Time for last 1,000,000: 2s. Last read position: chr17:41,584,272 INFO 2026-06-03 22:32:59 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 01:59:52s. Time for last 1,000,000: 2s. Last read position: chr17:41,586,372 INFO 2026-06-03 22:33:01 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 01:59:54s. Time for last 1,000,000: 2s. Last read position: chr17:41,586,601 INFO 2026-06-03 22:33:04 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 01:59:56s. Time for last 1,000,000: 2s. Last read position: chr17:41,609,877 INFO 2026-06-03 22:33:06 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 01:59:59s. Time for last 1,000,000: 2s. Last read position: chr17:41,610,419 INFO 2026-06-03 22:33:09 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 02:00:02s. Time for last 1,000,000: 2s. Last read position: chr17:41,611,183 INFO 2026-06-03 22:33:12 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 02:00:05s. Time for last 1,000,000: 3s. Last read position: chr17:41,612,195 INFO 2026-06-03 22:33:16 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 02:00:09s. Time for last 1,000,000: 3s. Last read position: chr17:41,612,325 INFO 2026-06-03 22:33:20 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 02:00:13s. Time for last 1,000,000: 3s. Last read position: chr17:41,612,595 INFO 2026-06-03 22:33:23 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 02:00:16s. Time for last 1,000,000: 3s. Last read position: chr17:41,619,582 INFO 2026-06-03 22:33:27 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 02:00:20s. Time for last 1,000,000: 4s. Last read position: chr17:41,620,977 INFO 2026-06-03 22:33:32 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 02:00:25s. Time for last 1,000,000: 4s. Last read position: chr17:41,622,381 INFO 2026-06-03 22:33:39 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 02:00:32s. Time for last 1,000,000: 6s. Last read position: chr17:41,624,130 INFO 2026-06-03 22:33:47 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 02:00:40s. Time for last 1,000,000: 7s. Last read position: chr17:41,624,351 INFO 2026-06-03 22:33:52 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 02:00:45s. Time for last 1,000,000: 5s. Last read position: chr17:41,758,427 INFO 2026-06-03 22:34:02 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 02:00:55s. Time for last 1,000,000: 10s. Last read position: chr17:42,192,435 INFO 2026-06-03 22:34:26 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 02:01:19s. Time for last 1,000,000: 23s. Last read position: chr17:43,002,696 INFO 2026-06-03 22:34:37 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 02:01:29s. Time for last 1,000,000: 10s. Last read position: chr17:44,400,930 INFO 2026-06-03 22:34:48 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 02:01:41s. Time for last 1,000,000: 11s. Last read position: chr17:46,548,319 INFO 2026-06-03 22:35:01 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 02:01:54s. Time for last 1,000,000: 13s. Last read position: chr17:49,405,168 INFO 2026-06-03 22:35:08 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 02:02:01s. Time for last 1,000,000: 6s. Last read position: chr17:50,186,791 INFO 2026-06-03 22:35:14 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 02:02:07s. Time for last 1,000,000: 6s. Last read position: chr17:50,188,539 INFO 2026-06-03 22:35:20 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 02:02:13s. Time for last 1,000,000: 6s. Last read position: chr17:50,189,518 INFO 2026-06-03 22:35:29 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 02:02:22s. Time for last 1,000,000: 8s. Last read position: chr17:50,190,888 INFO 2026-06-03 22:35:38 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 02:02:31s. Time for last 1,000,000: 9s. Last read position: chr17:50,192,798 INFO 2026-06-03 22:35:49 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 02:02:42s. Time for last 1,000,000: 10s. Last read position: chr17:50,194,430 INFO 2026-06-03 22:36:01 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 02:02:54s. Time for last 1,000,000: 11s. Last read position: chr17:50,195,599 INFO 2026-06-03 22:36:14 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 02:03:07s. Time for last 1,000,000: 13s. Last read position: chr17:50,197,009 INFO 2026-06-03 22:36:28 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 02:03:21s. Time for last 1,000,000: 14s. Last read position: chr17:50,199,273 INFO 2026-06-03 22:36:45 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 02:03:37s. Time for last 1,000,000: 16s. Last read position: chr17:51,166,480 INFO 2026-06-03 22:36:55 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 02:03:48s. Time for last 1,000,000: 10s. Last read position: chr17:59,677,150 INFO 2026-06-03 22:37:08 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 02:04:01s. Time for last 1,000,000: 13s. Last read position: chr17:63,421,849 INFO 2026-06-03 22:37:23 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 02:04:16s. Time for last 1,000,000: 15s. Last read position: chr17:65,014,369 INFO 2026-06-03 22:37:37 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 02:04:30s. Time for last 1,000,000: 13s. Last read position: chr17:73,205,551 INFO 2026-06-03 22:37:49 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 02:04:42s. Time for last 1,000,000: 12s. Last read position: chr17:75,616,899 INFO 2026-06-03 22:38:06 SinglePassSamProgram Processed 532,000,000 records. Elapsed time: 02:04:59s. Time for last 1,000,000: 16s. Last read position: chr17:76,007,416 INFO 2026-06-03 22:38:16 SinglePassSamProgram Processed 533,000,000 records. Elapsed time: 02:05:09s. Time for last 1,000,000: 10s. Last read position: chr17:77,340,245 INFO 2026-06-03 22:38:28 SinglePassSamProgram Processed 534,000,000 records. Elapsed time: 02:05:21s. Time for last 1,000,000: 11s. Last read position: chr17:78,974,776 INFO 2026-06-03 22:38:42 SinglePassSamProgram Processed 535,000,000 records. Elapsed time: 02:05:35s. Time for last 1,000,000: 13s. Last read position: chr17:80,346,938 INFO 2026-06-03 22:39:03 SinglePassSamProgram Processed 536,000,000 records. Elapsed time: 02:05:56s. Time for last 1,000,000: 21s. Last read position: chr17:81,512,297 INFO 2026-06-03 22:39:38 SinglePassSamProgram Processed 537,000,000 records. Elapsed time: 02:06:30s. Time for last 1,000,000: 34s. Last read position: chr17:82,012,257 INFO 2026-06-03 22:39:52 SinglePassSamProgram Processed 538,000,000 records. Elapsed time: 02:06:45s. Time for last 1,000,000: 14s. Last read position: chr17:82,927,899 INFO 2026-06-03 22:40:02 SinglePassSamProgram Processed 539,000,000 records. Elapsed time: 02:06:55s. Time for last 1,000,000: 9s. Last read position: chr18:9,583,230 INFO 2026-06-03 22:40:11 SinglePassSamProgram Processed 540,000,000 records. Elapsed time: 02:07:04s. Time for last 1,000,000: 9s. Last read position: chr18:23,467,501 INFO 2026-06-03 22:40:26 SinglePassSamProgram Processed 541,000,000 records. Elapsed time: 02:07:19s. Time for last 1,000,000: 14s. Last read position: chr18:31,068,031 INFO 2026-06-03 22:40:32 SinglePassSamProgram Processed 542,000,000 records. Elapsed time: 02:07:25s. Time for last 1,000,000: 5s. Last read position: chr18:31,318,311 INFO 2026-06-03 22:40:36 SinglePassSamProgram Processed 543,000,000 records. Elapsed time: 02:07:29s. Time for last 1,000,000: 3s. Last read position: chr18:31,461,291 INFO 2026-06-03 22:40:40 SinglePassSamProgram Processed 544,000,000 records. Elapsed time: 02:07:33s. Time for last 1,000,000: 4s. Last read position: chr18:36,111,234 INFO 2026-06-03 22:40:55 SinglePassSamProgram Processed 545,000,000 records. Elapsed time: 02:07:48s. Time for last 1,000,000: 14s. Last read position: chr18:50,286,820 INFO 2026-06-03 22:41:18 SinglePassSamProgram Processed 546,000,000 records. Elapsed time: 02:08:11s. Time for last 1,000,000: 23s. Last read position: chr18:62,717,131 INFO 2026-06-03 22:41:26 SinglePassSamProgram Processed 547,000,000 records. Elapsed time: 02:08:19s. Time for last 1,000,000: 7s. Last read position: chr18:74,631,066 INFO 2026-06-03 22:41:36 SinglePassSamProgram Processed 548,000,000 records. Elapsed time: 02:08:29s. Time for last 1,000,000: 10s. Last read position: chr19:810,736 INFO 2026-06-03 22:41:47 SinglePassSamProgram Processed 549,000,000 records. Elapsed time: 02:08:40s. Time for last 1,000,000: 10s. Last read position: chr19:1,254,388 INFO 2026-06-03 22:41:55 SinglePassSamProgram Processed 550,000,000 records. Elapsed time: 02:08:48s. Time for last 1,000,000: 8s. Last read position: chr19:2,073,401 INFO 2026-06-03 22:42:03 SinglePassSamProgram Processed 551,000,000 records. Elapsed time: 02:08:56s. Time for last 1,000,000: 7s. Last read position: chr19:3,544,629 INFO 2026-06-03 22:42:10 SinglePassSamProgram Processed 552,000,000 records. Elapsed time: 02:09:03s. Time for last 1,000,000: 6s. Last read position: chr19:4,839,481 INFO 2026-06-03 22:42:19 SinglePassSamProgram Processed 553,000,000 records. Elapsed time: 02:09:12s. Time for last 1,000,000: 9s. Last read position: chr19:6,426,470 INFO 2026-06-03 22:42:31 SinglePassSamProgram Processed 554,000,000 records. Elapsed time: 02:09:24s. Time for last 1,000,000: 11s. Last read position: chr19:8,311,487 INFO 2026-06-03 22:42:42 SinglePassSamProgram Processed 555,000,000 records. Elapsed time: 02:09:35s. Time for last 1,000,000: 10s. Last read position: chr19:10,151,449 INFO 2026-06-03 22:42:59 SinglePassSamProgram Processed 556,000,000 records. Elapsed time: 02:09:52s. Time for last 1,000,000: 17s. Last read position: chr19:10,991,187 INFO 2026-06-03 22:43:22 SinglePassSamProgram Processed 557,000,000 records. Elapsed time: 02:10:15s. Time for last 1,000,000: 23s. Last read position: chr19:12,701,183 INFO 2026-06-03 22:43:35 SinglePassSamProgram Processed 558,000,000 records. Elapsed time: 02:10:28s. Time for last 1,000,000: 12s. Last read position: chr19:13,751,790 INFO 2026-06-03 22:43:45 SinglePassSamProgram Processed 559,000,000 records. Elapsed time: 02:10:38s. Time for last 1,000,000: 9s. Last read position: chr19:14,518,199 INFO 2026-06-03 22:43:53 SinglePassSamProgram Processed 560,000,000 records. Elapsed time: 02:10:46s. Time for last 1,000,000: 8s. Last read position: chr19:15,256,964 INFO 2026-06-03 22:44:06 SinglePassSamProgram Processed 561,000,000 records. Elapsed time: 02:10:59s. Time for last 1,000,000: 12s. Last read position: chr19:17,102,503 INFO 2026-06-03 22:44:16 SinglePassSamProgram Processed 562,000,000 records. Elapsed time: 02:11:09s. Time for last 1,000,000: 9s. Last read position: chr19:18,009,943 INFO 2026-06-03 22:44:23 SinglePassSamProgram Processed 563,000,000 records. Elapsed time: 02:11:16s. Time for last 1,000,000: 7s. Last read position: chr19:19,025,505 INFO 2026-06-03 22:44:31 SinglePassSamProgram Processed 564,000,000 records. Elapsed time: 02:11:24s. Time for last 1,000,000: 7s. Last read position: chr19:34,377,572 INFO 2026-06-03 22:44:39 SinglePassSamProgram Processed 565,000,000 records. Elapsed time: 02:11:32s. Time for last 1,000,000: 8s. Last read position: chr19:35,488,666 INFO 2026-06-03 22:45:16 SinglePassSamProgram Processed 566,000,000 records. Elapsed time: 02:12:09s. Time for last 1,000,000: 37s. Last read position: chr19:35,524,877 INFO 2026-06-03 22:45:20 SinglePassSamProgram Processed 567,000,000 records. Elapsed time: 02:12:13s. Time for last 1,000,000: 3s. Last read position: chr19:35,527,474 INFO 2026-06-03 22:45:23 SinglePassSamProgram Processed 568,000,000 records. Elapsed time: 02:12:16s. Time for last 1,000,000: 2s. Last read position: chr19:35,528,139 INFO 2026-06-03 22:45:31 SinglePassSamProgram Processed 569,000,000 records. Elapsed time: 02:12:24s. Time for last 1,000,000: 8s. Last read position: chr19:38,283,640 INFO 2026-06-03 22:45:46 SinglePassSamProgram Processed 570,000,000 records. Elapsed time: 02:12:39s. Time for last 1,000,000: 14s. Last read position: chr19:38,771,068 INFO 2026-06-03 22:45:51 SinglePassSamProgram Processed 571,000,000 records. Elapsed time: 02:12:44s. Time for last 1,000,000: 4s. Last read position: chr19:39,388,792 INFO 2026-06-03 22:45:58 SinglePassSamProgram Processed 572,000,000 records. Elapsed time: 02:12:51s. Time for last 1,000,000: 7s. Last read position: chr19:39,943,443 INFO 2026-06-03 22:46:19 SinglePassSamProgram Processed 573,000,000 records. Elapsed time: 02:13:12s. Time for last 1,000,000: 21s. Last read position: chr19:41,279,130 INFO 2026-06-03 22:46:33 SinglePassSamProgram Processed 574,000,000 records. Elapsed time: 02:13:26s. Time for last 1,000,000: 13s. Last read position: chr19:42,273,474 INFO 2026-06-03 22:46:39 SinglePassSamProgram Processed 575,000,000 records. Elapsed time: 02:13:32s. Time for last 1,000,000: 6s. Last read position: chr19:42,402,888 INFO 2026-06-03 22:46:44 SinglePassSamProgram Processed 576,000,000 records. Elapsed time: 02:13:37s. Time for last 1,000,000: 4s. Last read position: chr19:44,878,228 INFO 2026-06-03 22:46:52 SinglePassSamProgram Processed 577,000,000 records. Elapsed time: 02:13:45s. Time for last 1,000,000: 7s. Last read position: chr19:45,616,835 INFO 2026-06-03 22:47:01 SinglePassSamProgram Processed 578,000,000 records. Elapsed time: 02:13:54s. Time for last 1,000,000: 8s. Last read position: chr19:47,270,589 INFO 2026-06-03 22:47:09 SinglePassSamProgram Processed 579,000,000 records. Elapsed time: 02:14:02s. Time for last 1,000,000: 7s. Last read position: chr19:48,795,358 INFO 2026-06-03 22:47:18 SinglePassSamProgram Processed 580,000,000 records. Elapsed time: 02:14:11s. Time for last 1,000,000: 9s. Last read position: chr19:49,497,944 INFO 2026-06-03 22:47:28 SinglePassSamProgram Processed 581,000,000 records. Elapsed time: 02:14:21s. Time for last 1,000,000: 10s. Last read position: chr19:49,951,916 INFO 2026-06-03 22:47:36 SinglePassSamProgram Processed 582,000,000 records. Elapsed time: 02:14:29s. Time for last 1,000,000: 7s. Last read position: chr19:51,014,799 INFO 2026-06-03 22:47:40 SinglePassSamProgram Processed 583,000,000 records. Elapsed time: 02:14:33s. Time for last 1,000,000: 4s. Last read position: chr19:51,896,540 INFO 2026-06-03 22:47:48 SinglePassSamProgram Processed 584,000,000 records. Elapsed time: 02:14:41s. Time for last 1,000,000: 7s. Last read position: chr19:54,456,697 INFO 2026-06-03 22:47:57 SinglePassSamProgram Processed 585,000,000 records. Elapsed time: 02:14:49s. Time for last 1,000,000: 8s. Last read position: chr19:55,602,136 INFO 2026-06-03 22:48:01 SinglePassSamProgram Processed 586,000,000 records. Elapsed time: 02:14:54s. Time for last 1,000,000: 4s. Last read position: chr19:58,470,929 INFO 2026-06-03 22:48:10 SinglePassSamProgram Processed 587,000,000 records. Elapsed time: 02:15:03s. Time for last 1,000,000: 8s. Last read position: chr20:2,309,724 INFO 2026-06-03 22:48:13 SinglePassSamProgram Processed 588,000,000 records. Elapsed time: 02:15:06s. Time for last 1,000,000: 3s. Last read position: chr20:2,656,798 INFO 2026-06-03 22:48:19 SinglePassSamProgram Processed 589,000,000 records. Elapsed time: 02:15:12s. Time for last 1,000,000: 5s. Last read position: chr20:5,100,784 INFO 2026-06-03 22:48:26 SinglePassSamProgram Processed 590,000,000 records. Elapsed time: 02:15:19s. Time for last 1,000,000: 6s. Last read position: chr20:17,620,721 INFO 2026-06-03 22:48:34 SinglePassSamProgram Processed 591,000,000 records. Elapsed time: 02:15:27s. Time for last 1,000,000: 8s. Last read position: chr20:25,048,084 INFO 2026-06-03 22:48:44 SinglePassSamProgram Processed 592,000,000 records. Elapsed time: 02:15:37s. Time for last 1,000,000: 9s. Last read position: chr20:34,479,671 INFO 2026-06-03 22:49:04 SinglePassSamProgram Processed 593,000,000 records. Elapsed time: 02:15:57s. Time for last 1,000,000: 20s. Last read position: chr20:36,526,971 INFO 2026-06-03 22:49:14 SinglePassSamProgram Processed 594,000,000 records. Elapsed time: 02:16:07s. Time for last 1,000,000: 10s. Last read position: chr20:41,202,074 INFO 2026-06-03 22:49:18 SinglePassSamProgram Processed 595,000,000 records. Elapsed time: 02:16:11s. Time for last 1,000,000: 4s. Last read position: chr20:45,253,098 INFO 2026-06-03 22:49:33 SinglePassSamProgram Processed 596,000,000 records. Elapsed time: 02:16:26s. Time for last 1,000,000: 14s. Last read position: chr20:47,635,331 INFO 2026-06-03 22:49:41 SinglePassSamProgram Processed 597,000,000 records. Elapsed time: 02:16:34s. Time for last 1,000,000: 8s. Last read position: chr20:50,892,805 INFO 2026-06-03 22:49:56 SinglePassSamProgram Processed 598,000,000 records. Elapsed time: 02:16:49s. Time for last 1,000,000: 14s. Last read position: chr20:58,994,662 INFO 2026-06-03 22:50:06 SinglePassSamProgram Processed 599,000,000 records. Elapsed time: 02:16:59s. Time for last 1,000,000: 10s. Last read position: chr20:62,813,195 INFO 2026-06-03 22:50:12 SinglePassSamProgram Processed 600,000,000 records. Elapsed time: 02:17:05s. Time for last 1,000,000: 5s. Last read position: chr20:63,661,784 INFO 2026-06-03 22:50:16 SinglePassSamProgram Processed 601,000,000 records. Elapsed time: 02:17:09s. Time for last 1,000,000: 4s. Last read position: chr21:8,214,047 INFO 2026-06-03 22:50:17 SinglePassSamProgram Processed 602,000,000 records. Elapsed time: 02:17:10s. Time for last 1,000,000: 0s. Last read position: chr21:8,260,263 INFO 2026-06-03 22:50:18 SinglePassSamProgram Processed 603,000,000 records. Elapsed time: 02:17:11s. Time for last 1,000,000: 1s. Last read position: chr21:8,441,948 INFO 2026-06-03 22:50:20 SinglePassSamProgram Processed 604,000,000 records. Elapsed time: 02:17:13s. Time for last 1,000,000: 1s. Last read position: chr21:17,598,740 INFO 2026-06-03 22:50:30 SinglePassSamProgram Processed 605,000,000 records. Elapsed time: 02:17:23s. Time for last 1,000,000: 9s. Last read position: chr21:33,460,410 INFO 2026-06-03 22:50:44 SinglePassSamProgram Processed 606,000,000 records. Elapsed time: 02:17:37s. Time for last 1,000,000: 14s. Last read position: chr21:38,296,976 INFO 2026-06-03 22:51:15 SinglePassSamProgram Processed 607,000,000 records. Elapsed time: 02:18:08s. Time for last 1,000,000: 30s. Last read position: chr21:42,862,315 INFO 2026-06-03 22:51:22 SinglePassSamProgram Processed 608,000,000 records. Elapsed time: 02:18:15s. Time for last 1,000,000: 6s. Last read position: chr21:44,907,012 INFO 2026-06-03 22:51:35 SinglePassSamProgram Processed 609,000,000 records. Elapsed time: 02:18:27s. Time for last 1,000,000: 12s. Last read position: chr21:45,990,979 INFO 2026-06-03 22:51:44 SinglePassSamProgram Processed 610,000,000 records. Elapsed time: 02:18:37s. Time for last 1,000,000: 9s. Last read position: chr21:46,121,072 INFO 2026-06-03 22:51:59 SinglePassSamProgram Processed 611,000,000 records. Elapsed time: 02:18:52s. Time for last 1,000,000: 14s. Last read position: chr22:17,864,938 INFO 2026-06-03 22:52:10 SinglePassSamProgram Processed 612,000,000 records. Elapsed time: 02:19:03s. Time for last 1,000,000: 11s. Last read position: chr22:20,918,062 INFO 2026-06-03 22:52:21 SinglePassSamProgram Processed 613,000,000 records. Elapsed time: 02:19:14s. Time for last 1,000,000: 10s. Last read position: chr22:23,772,921 INFO 2026-06-03 22:52:31 SinglePassSamProgram Processed 614,000,000 records. Elapsed time: 02:19:23s. Time for last 1,000,000: 9s. Last read position: chr22:28,795,098 INFO 2026-06-03 22:52:46 SinglePassSamProgram Processed 615,000,000 records. Elapsed time: 02:19:39s. Time for last 1,000,000: 15s. Last read position: chr22:29,603,945 INFO 2026-06-03 22:52:58 SinglePassSamProgram Processed 616,000,000 records. Elapsed time: 02:19:50s. Time for last 1,000,000: 11s. Last read position: chr22:31,714,645 INFO 2026-06-03 22:53:09 SinglePassSamProgram Processed 617,000,000 records. Elapsed time: 02:20:02s. Time for last 1,000,000: 11s. Last read position: chr22:36,288,847 INFO 2026-06-03 22:53:16 SinglePassSamProgram Processed 618,000,000 records. Elapsed time: 02:20:09s. Time for last 1,000,000: 7s. Last read position: chr22:37,232,877 INFO 2026-06-03 22:53:27 SinglePassSamProgram Processed 619,000,000 records. Elapsed time: 02:20:20s. Time for last 1,000,000: 10s. Last read position: chr22:38,481,331 INFO 2026-06-03 22:53:33 SinglePassSamProgram Processed 620,000,000 records. Elapsed time: 02:20:26s. Time for last 1,000,000: 6s. Last read position: chr22:40,360,475 INFO 2026-06-03 22:53:44 SinglePassSamProgram Processed 621,000,000 records. Elapsed time: 02:20:37s. Time for last 1,000,000: 10s. Last read position: chr22:41,893,077 INFO 2026-06-03 22:53:51 SinglePassSamProgram Processed 622,000,000 records. Elapsed time: 02:20:44s. Time for last 1,000,000: 6s. Last read position: chr22:45,738,729 INFO 2026-06-03 22:54:01 SinglePassSamProgram Processed 623,000,000 records. Elapsed time: 02:20:54s. Time for last 1,000,000: 10s. Last read position: chr22:50,275,910 INFO 2026-06-03 22:54:13 SinglePassSamProgram Processed 624,000,000 records. Elapsed time: 02:21:06s. Time for last 1,000,000: 12s. Last read position: chr22:50,526,058 INFO 2026-06-03 22:54:24 SinglePassSamProgram Processed 625,000,000 records. Elapsed time: 02:21:16s. Time for last 1,000,000: 10s. Last read position: chr22:50,722,293 INFO 2026-06-03 22:54:27 SinglePassSamProgram Processed 626,000,000 records. Elapsed time: 02:21:20s. Time for last 1,000,000: 3s. Last read position: chrX:11,760,863 INFO 2026-06-03 22:54:38 SinglePassSamProgram Processed 627,000,000 records. Elapsed time: 02:21:31s. Time for last 1,000,000: 10s. Last read position: chrX:37,805,150 INFO 2026-06-03 22:55:06 SinglePassSamProgram Processed 628,000,000 records. Elapsed time: 02:21:59s. Time for last 1,000,000: 28s. Last read position: chrX:47,185,733 INFO 2026-06-03 22:55:17 SinglePassSamProgram Processed 629,000,000 records. Elapsed time: 02:22:10s. Time for last 1,000,000: 11s. Last read position: chrX:49,030,562 INFO 2026-06-03 22:55:26 SinglePassSamProgram Processed 630,000,000 records. Elapsed time: 02:22:19s. Time for last 1,000,000: 9s. Last read position: chrX:53,552,638 INFO 2026-06-03 22:55:42 SinglePassSamProgram Processed 631,000,000 records. Elapsed time: 02:22:35s. Time for last 1,000,000: 16s. Last read position: chrX:68,772,233 INFO 2026-06-03 22:55:56 SinglePassSamProgram Processed 632,000,000 records. Elapsed time: 02:22:49s. Time for last 1,000,000: 13s. Last read position: chrX:77,682,677 INFO 2026-06-03 22:56:04 SinglePassSamProgram Processed 633,000,000 records. Elapsed time: 02:22:57s. Time for last 1,000,000: 8s. Last read position: chrX:108,692,797 INFO 2026-06-03 22:56:15 SinglePassSamProgram Processed 634,000,000 records. Elapsed time: 02:23:08s. Time for last 1,000,000: 10s. Last read position: chrX:129,792,983 INFO 2026-06-03 22:56:25 SinglePassSamProgram Processed 635,000,000 records. Elapsed time: 02:23:18s. Time for last 1,000,000: 9s. Last read position: chrX:152,920,568 INFO 2026-06-03 22:56:36 SinglePassSamProgram Processed 636,000,000 records. Elapsed time: 02:23:29s. Time for last 1,000,000: 11s. Last read position: chrX:154,349,458 INFO 2026-06-03 22:57:08 SinglePassSamProgram Processed 637,000,000 records. Elapsed time: 02:24:01s. Time for last 1,000,000: 31s. Last read position: chrX:154,450,035 INFO 2026-06-03 22:57:15 SinglePassSamProgram Processed 638,000,000 records. Elapsed time: 02:24:08s. Time for last 1,000,000: 7s. Last read position: GL000220.1:107,450 INFO 2026-06-03 22:57:16 SinglePassSamProgram Processed 639,000,000 records. Elapsed time: 02:24:09s. Time for last 1,000,000: 0s. Last read position: GL000220.1:152,904 INFO 2026-06-03 22:57:17 SinglePassSamProgram Processed 640,000,000 records. Elapsed time: 02:24:10s. Time for last 1,000,000: 0s. Last read position: KI270733.1:128,463 INFO 2026-06-03 22:57:17 SinglePassSamProgram Processed 641,000,000 records. Elapsed time: 02:24:10s. Time for last 1,000,000: 0s. Last read position: KI270733.1:171,702 INFO 2026-06-03 22:57:18 SinglePassSamProgram Processed 642,000,000 records. Elapsed time: 02:24:11s. Time for last 1,000,000: 0s. Last read position: */* INFO 2026-06-03 22:57:19 SinglePassSamProgram Processed 643,000,000 records. Elapsed time: 02:24:12s. Time for last 1,000,000: 0s. Last read position: */* INFO 2026-06-03 22:57:19 SinglePassSamProgram Processed 644,000,000 records. Elapsed time: 02:24:12s. Time for last 1,000,000: 0s. Last read position: */* INFO 2026-06-03 22:57:20 SinglePassSamProgram Processed 645,000,000 records. Elapsed time: 02:24:13s. Time for last 1,000,000: 0s. Last read position: */* INFO 2026-06-03 22:57:21 SinglePassSamProgram Processed 646,000,000 records. Elapsed time: 02:24:14s. Time for last 1,000,000: 0s. Last read position: */* [Wed Jun 03 22:57:23 GMT 2026] picard.analysis.CollectRnaSeqMetrics done. Elapsed time: 144.31 minutes. Runtime.totalMemory()=3481272320