Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/682e371175457d4a901ea58b836e9c/aih-tih-sc-318819-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/db0390e137cf3062481f869034d2c8/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/43baffcdf7bea4ecdaa91d64b10b2e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/0e830bcbe878e515254df17d01003a/aih-tih-sc-318819-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/43baffcdf7bea4ecdaa91d64b10b2e/.command.run
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-318819-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (10715638) splicing reads. 235307 splicing junctions. 175191 known splicing junctions. 60116 novel splicing junctions.
sampling 10% (21431276) splicing reads. 278043 splicing junctions. 186271 known splicing junctions. 91772 novel splicing junctions.
sampling 15% (32146915) splicing reads. 305591 splicing junctions. 191859 known splicing junctions. 113732 novel splicing junctions.
sampling 20% (42862553) splicing reads. 324746 splicing junctions. 195279 known splicing junctions. 129467 novel splicing junctions.
sampling 25% (53578191) splicing reads. 339206 splicing junctions. 197613 known splicing junctions. 141593 novel splicing junctions.
sampling 30% (64293830) splicing reads. 350629 splicing junctions. 199333 known splicing junctions. 151296 novel splicing junctions.
sampling 35% (75009468) splicing reads. 359618 splicing junctions. 200678 known splicing junctions. 158940 novel splicing junctions.
sampling 40% (85725106) splicing reads. 367173 splicing junctions. 201743 known splicing junctions. 165430 novel splicing junctions.
sampling 45% (96440745) splicing reads. 373377 splicing junctions. 202581 known splicing junctions. 170796 novel splicing junctions.
sampling 50% (107156383) splicing reads. 378384 splicing junctions. 203246 known splicing junctions. 175138 novel splicing junctions.
sampling 55% (117872021) splicing reads. 382678 splicing junctions. 203821 known splicing junctions. 178857 novel splicing junctions.
sampling 60% (128587660) splicing reads. 386296 splicing junctions. 204249 known splicing junctions. 182047 novel splicing junctions.
sampling 65% (139303298) splicing reads. 389234 splicing junctions. 204629 known splicing junctions. 184605 novel splicing junctions.
sampling 70% (150018936) splicing reads. 391734 splicing junctions. 204938 known splicing junctions. 186796 novel splicing junctions.
sampling 75% (160734575) splicing reads. 393913 splicing junctions. 205202 known splicing junctions. 188711 novel splicing junctions.
sampling 80% (171450213) splicing reads. 395561 splicing junctions. 205408 known splicing junctions. 190153 novel splicing junctions.
sampling 85% (182165851) splicing reads. 396940 splicing junctions. 205567 known splicing junctions. 191373 novel splicing junctions.
sampling 90% (192881490) splicing reads. 397980 splicing junctions. 205698 known splicing junctions. 192282 novel splicing junctions.
sampling 95% (203597128) splicing reads. 398678 splicing junctions. 205794 known splicing junctions. 192884 novel splicing junctions.
sampling 100% (214312767) splicing reads. 399047 splicing junctions. 205838 known splicing junctions. 193209 novel splicing junctions.
null device 
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