File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/4494a25cbd15372fa188aeaf4a3ef6/.command.log
Size
2.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-242a7d-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/670376c8e9884fa4dc94197e955f62/aih-tih-sc-242a7d-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e543dae6-5fea-4720-bfb6-150bf1ff20d4/82/1bfcba5045fc10a52ca200a4890a9a/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/4494a25cbd15372fa188aeaf4a3ef6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/4494a25cbd15372fa188aeaf4a3ef6/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/efd325fcbbc011cb256a7141f9eaad/aih-tih-sc-242a7d-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
DIS3L2--PTMA
starfusion
GTF2IRD1--NCF1
starfusion
EIF2AK1--HDAC9
starfusion
arriba
EIF2AK1--DGKB
starfusion
arriba
TLK2--AC240565.1
starfusion
MLLT1--RANBP3
starfusion
STX16--NPEPL1
arriba

  0%|          | 0/7 [00:00<?, ?it/s]
Processing DIS3L2--PTMA:   0%|          | 0/7 [00:00<?, ?it/s]
Processing DIS3L2--PTMA:  14%|█▍        | 1/7 [00:00<00:00,  9.21it/s]
Processing GTF2IRD1--NCF1:  14%|█▍        | 1/7 [00:00<00:00,  9.21it/s]
Processing GTF2IRD1--NCF1:  29%|██▊       | 2/7 [00:00<00:00,  9.44it/s]
Processing EIF2AK1--HDAC9:  29%|██▊       | 2/7 [00:00<00:00,  9.44it/s]
Processing EIF2AK1--HDAC9:  43%|████▎     | 3/7 [00:00<00:00,  9.51it/s]
Processing EIF2AK1--DGKB:  43%|████▎     | 3/7 [00:00<00:00,  9.51it/s] 
Processing EIF2AK1--DGKB:  57%|█████▋    | 4/7 [00:00<00:00,  9.54it/s]
Processing TLK2--AC240565.1:  57%|█████▋    | 4/7 [00:00<00:00,  9.54it/s]
Processing TLK2--AC240565.1:  71%|███████▏  | 5/7 [00:00<00:00,  9.57it/s]
Processing MLLT1--RANBP3:  71%|███████▏  | 5/7 [00:00<00:00,  9.57it/s]   
Processing MLLT1--RANBP3:  86%|████████▌ | 6/7 [00:00<00:00,  9.58it/s]
Processing STX16--NPEPL1:  86%|████████▌ | 6/7 [00:00<00:00,  9.58it/s]
Processing STX16--NPEPL1: 100%|██████████| 7/7 [00:00<00:00,  9.59it/s]
Processing STX16--NPEPL1: 100%|██████████| 7/7 [00:00<00:00,  9.54it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory