File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/3b71824875c643f5b97f405d2f94eb/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 03 21:43:39
                             Started mapping on |	Jun 03 21:50:22
                                    Finished on |	Jun 03 22:49:22
       Mapping speed, Million of reads per hour |	301.13

                          Number of input reads |	296109161
                      Average input read length |	251
                                    UNIQUE READS:
                   Uniquely mapped reads number |	277476141
                        Uniquely mapped reads % |	93.71%
                          Average mapped length |	251.00
                       Number of splices: Total |	308900173
            Number of splices: Annotated (sjdb) |	304797231
                       Number of splices: GT/AG |	305545042
                       Number of splices: GC/AG |	2035419
                       Number of splices: AT/AC |	260119
               Number of splices: Non-canonical |	1059593
                      Mismatch rate per base, % |	0.20%
                         Deletion rate per base |	0.02%
                        Deletion average length |	1.99
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.88
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	15368820
             % of reads mapped to multiple loci |	5.19%
        Number of reads mapped to too many loci |	461288
             % of reads mapped to too many loci |	0.16%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2228413
                 % of reads unmapped: too short |	0.75%
                Number of reads unmapped: other |	574499
                     % of reads unmapped: other |	0.19%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%