File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/9b5992e27bd92d0ab781e5e25834e2/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 03 21:03:28
                             Started mapping on |	Jun 03 21:10:11
                                    Finished on |	Jun 03 22:00:24
       Mapping speed, Million of reads per hour |	288.78

                          Number of input reads |	241691007
                      Average input read length |	228
                                    UNIQUE READS:
                   Uniquely mapped reads number |	234691797
                        Uniquely mapped reads % |	97.10%
                          Average mapped length |	227.42
                       Number of splices: Total |	269042196
            Number of splices: Annotated (sjdb) |	266124369
                       Number of splices: GT/AG |	266444580
                       Number of splices: GC/AG |	1205161
                       Number of splices: AT/AC |	117430
               Number of splices: Non-canonical |	1275025
                      Mismatch rate per base, % |	0.35%
                         Deletion rate per base |	0.03%
                        Deletion average length |	2.13
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.61
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	4876772
             % of reads mapped to multiple loci |	2.02%
        Number of reads mapped to too many loci |	283078
             % of reads mapped to too many loci |	0.12%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1604347
                 % of reads unmapped: too short |	0.66%
                Number of reads unmapped: other |	235013
                     % of reads unmapped: other |	0.10%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%