Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/4914bdd2d85ca7910df5dbb4fadaad/aih-tih-sc-3b436b-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/db0390e137cf3062481f869034d2c8/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/91b54afd56bb69e87e1bc1f14ee0d2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/91b54afd56bb69e87e1bc1f14ee0d2/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/ab4cba821fe861f62653a89021cb67/aih-tih-sc-3b436b-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

processing ref_annot.bed ... Done
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-3b436b-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
processing aih-tih-sc-3b436b-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam ... Finished