/usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory
INFO 2026-06-03 19:50:32 RExecutor Executing R script via command: Rscript /tmp/script9199079011317089536.R
ERROR 2026-06-03 19:50:32 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 19:50:32 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 19:50:32 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 19:50:32 ProcessExecutor During startup - Warning messages:
ERROR 2026-06-03 19:50:32 ProcessExecutor 1: Setting LC_CTYPE failed, using "C"
ERROR 2026-06-03 19:50:32 ProcessExecutor 2: Setting LC_COLLATE failed, using "C"
ERROR 2026-06-03 19:50:32 ProcessExecutor 3: Setting LC_TIME failed, using "C"
ERROR 2026-06-03 19:50:32 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C"
ERROR 2026-06-03 19:50:32 ProcessExecutor 5: Setting LC_MONETARY failed, using "C"
ERROR 2026-06-03 19:50:32 ProcessExecutor 6: Setting LC_PAPER failed, using "C"
ERROR 2026-06-03 19:50:32 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C"
INFO 2026-06-03 19:50:32 ProcessExecutor [1] "Checking if R is installed"
ERROR 2026-06-03 19:50:32 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
Jun 03, 2026 7:50:32 PM com.intel.gkl.NativeLibraryLoader load
INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so
[Wed Jun 03 19:50:32 GMT 2026] CollectInsertSizeMetrics --Histogram_FILE aih-tih-sc-3282fd-R1_A23YTGFLT4_1_collectinsertsize.pdf --INPUT aih-tih-sc-3282fd-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-3282fd-R1_A23YTGFLT4_1_collectinsertsize.txt --DEVIATIONS 10.0 --MINIMUM_PCT 0.05 --METRIC_ACCUMULATION_LEVEL ALL_READS --INCLUDE_DUPLICATES false --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Wed Jun 03 19:50:32 GMT 2026] Executing as ?@nf-dfa8ebafcba3fa88f0a0675ce0ca85f1-95faf-zrcm4 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0
INFO 2026-06-03 19:50:34 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,387,368
INFO 2026-06-03 19:50:36 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 1s. Last read position: chr1:2,588,339
INFO 2026-06-03 19:50:38 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 1s. Last read position: chr1:8,863,902
INFO 2026-06-03 19:50:39 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:11,790,840
INFO 2026-06-03 19:50:41 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 1s. Last read position: chr1:15,660,453
INFO 2026-06-03 19:50:42 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:17,004,994
INFO 2026-06-03 19:50:44 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:19,739,816
INFO 2026-06-03 19:50:46 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 1s. Last read position: chr1:21,875,895
INFO 2026-06-03 19:50:47 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 1s. Last read position: chr1:23,311,306
INFO 2026-06-03 19:50:49 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:25,901,578
INFO 2026-06-03 19:50:50 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 1s. Last read position: chr1:27,409,987
INFO 2026-06-03 19:50:52 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:30,964,789
INFO 2026-06-03 19:50:53 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:32,280,114
INFO 2026-06-03 19:50:55 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 1s. Last read position: chr1:35,192,597
INFO 2026-06-03 19:50:56 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:37,569,101
INFO 2026-06-03 19:50:58 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 1s. Last read position: chr1:39,965,916
INFO 2026-06-03 19:50:59 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:43,415,979
INFO 2026-06-03 19:51:01 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:45,604,947
INFO 2026-06-03 19:51:02 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:51,806,727
INFO 2026-06-03 19:51:04 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:58,576,672
INFO 2026-06-03 19:51:06 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:70,232,348
INFO 2026-06-03 19:51:07 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:88,983,627
INFO 2026-06-03 19:51:08 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:94,487,961
INFO 2026-06-03 19:51:10 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:109,269,975
INFO 2026-06-03 19:51:11 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:112,667,091
INFO 2026-06-03 19:51:12 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:116,395,275
INFO 2026-06-03 19:51:13 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:119,948,422
INFO 2026-06-03 19:51:15 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:144,063,177
INFO 2026-06-03 19:51:16 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:146,156,167
INFO 2026-06-03 19:51:18 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:148,589,295
INFO 2026-06-03 19:51:19 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:149,852,977
INFO 2026-06-03 19:51:21 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:150,750,025
INFO 2026-06-03 19:51:22 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:151,775,837
INFO 2026-06-03 19:51:24 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:154,157,588
INFO 2026-06-03 19:51:25 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:154,602,048
INFO 2026-06-03 19:51:27 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:155,237,357
INFO 2026-06-03 19:51:28 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:156,061,368
INFO 2026-06-03 19:51:29 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:156,816,079
INFO 2026-06-03 19:51:31 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:160,354,208
INFO 2026-06-03 19:51:32 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:161,518,076
INFO 2026-06-03 19:51:34 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:168,231,833
INFO 2026-06-03 19:51:35 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:172,585,907
INFO 2026-06-03 19:51:36 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:182,385,355
INFO 2026-06-03 19:51:38 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:186,336,557
INFO 2026-06-03 19:51:40 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:200,912,088
INFO 2026-06-03 19:51:41 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:203,709,324
INFO 2026-06-03 19:51:42 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:206,406,423
INFO 2026-06-03 19:51:43 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:207,785,096
INFO 2026-06-03 19:51:44 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:220,879,867
INFO 2026-06-03 19:51:46 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:226,377,190
INFO 2026-06-03 19:51:47 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:231,528,801
INFO 2026-06-03 19:51:49 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:243,052,153
INFO 2026-06-03 19:51:51 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr2:1,693,093
INFO 2026-06-03 19:51:52 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr2:15,379,798
INFO 2026-06-03 19:51:54 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr2:24,711,072
INFO 2026-06-03 19:51:55 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr2:27,217,832
INFO 2026-06-03 19:51:57 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr2:28,799,244
INFO 2026-06-03 19:51:58 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-03 19:52:00 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-03 19:52:02 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr2:36,916,124
INFO 2026-06-03 19:52:03 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr2:43,224,363
INFO 2026-06-03 19:52:05 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr2:47,790,929
INFO 2026-06-03 19:52:06 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr2:55,232,816
INFO 2026-06-03 19:52:08 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr2:64,552,315
INFO 2026-06-03 19:52:10 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr2:70,276,733
INFO 2026-06-03 19:52:11 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr2:74,371,611
INFO 2026-06-03 19:52:13 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 2s. Last read position: chr2:85,553,339
INFO 2026-06-03 19:52:15 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr2:95,855,815
INFO 2026-06-03 19:52:17 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr2:98,537,875
INFO 2026-06-03 19:52:19 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr2:106,424,790
INFO 2026-06-03 19:52:20 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr2:109,819,760
INFO 2026-06-03 19:52:23 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 2s. Last read position: chr2:112,433,397
INFO 2026-06-03 19:52:24 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr2:127,318,189
INFO 2026-06-03 19:52:26 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr2:138,013,954
INFO 2026-06-03 19:52:28 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr2:159,320,319
INFO 2026-06-03 19:52:29 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr2:171,554,723
INFO 2026-06-03 19:52:31 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr2:178,537,091
INFO 2026-06-03 19:52:32 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr2:188,993,297
INFO 2026-06-03 19:52:34 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:196,688,938
INFO 2026-06-03 19:52:35 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:202,302,969
INFO 2026-06-03 19:52:37 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:212,538,448
INFO 2026-06-03 19:52:39 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:215,391,632
INFO 2026-06-03 19:52:40 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr2:216,137,168
INFO 2026-06-03 19:52:42 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr2:218,404,301
INFO 2026-06-03 19:52:43 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:224,844,761
INFO 2026-06-03 19:52:44 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:231,239,968
INFO 2026-06-03 19:52:46 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:235,042,944
INFO 2026-06-03 19:52:47 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:240,529,399
INFO 2026-06-03 19:52:49 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr3:4,981,281
INFO 2026-06-03 19:52:50 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr3:11,829,820
INFO 2026-06-03 19:52:52 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr3:15,675,897
INFO 2026-06-03 19:52:53 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr3:33,072,555
INFO 2026-06-03 19:52:55 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr3:39,410,903
INFO 2026-06-03 19:52:57 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr3:45,159,816
INFO 2026-06-03 19:52:58 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr3:47,661,428
INFO 2026-06-03 19:53:00 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr3:48,694,924
INFO 2026-06-03 19:53:01 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr3:49,358,131
INFO 2026-06-03 19:53:03 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr3:50,355,415
INFO 2026-06-03 19:53:04 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr3:52,495,372
INFO 2026-06-03 19:53:06 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 2s. Last read position: chr3:53,881,981
INFO 2026-06-03 19:53:08 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr3:64,616,086
INFO 2026-06-03 19:53:10 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr3:97,843,233
INFO 2026-06-03 19:53:11 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr3:105,552,564
INFO 2026-06-03 19:53:13 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr3:119,675,220
INFO 2026-06-03 19:53:14 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr3:123,318,024
INFO 2026-06-03 19:53:16 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr3:128,626,736
INFO 2026-06-03 19:53:18 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr3:133,574,226
INFO 2026-06-03 19:53:19 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr3:143,028,518
INFO 2026-06-03 19:53:21 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr3:156,553,722
INFO 2026-06-03 19:53:23 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr3:172,247,591
INFO 2026-06-03 19:53:24 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr3:184,174,946
INFO 2026-06-03 19:53:26 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr3:186,789,159
INFO 2026-06-03 19:53:27 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr3:194,652,838
INFO 2026-06-03 19:53:28 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr3:195,779,658
INFO 2026-06-03 19:53:30 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr3:196,071,423
INFO 2026-06-03 19:53:32 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr4:1,212,338
INFO 2026-06-03 19:53:34 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr4:2,829,929
INFO 2026-06-03 19:53:35 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr4:7,838,687
INFO 2026-06-03 19:53:37 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr4:24,549,012
INFO 2026-06-03 19:53:38 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr4:40,243,729
INFO 2026-06-03 19:53:40 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr4:54,267,300
INFO 2026-06-03 19:53:41 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr4:54,295,145
INFO 2026-06-03 19:53:42 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr4:72,147,246
INFO 2026-06-03 19:53:44 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr4:77,611,061
INFO 2026-06-03 19:53:45 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr4:86,935,181
INFO 2026-06-03 19:53:47 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr4:101,239,998
INFO 2026-06-03 19:53:48 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr4:113,759,355
INFO 2026-06-03 19:53:50 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr4:128,287,446
INFO 2026-06-03 19:53:51 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr4:150,490,952
INFO 2026-06-03 19:53:53 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr4:168,406,675
INFO 2026-06-03 19:53:54 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr4:186,617,716
INFO 2026-06-03 19:53:56 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr5:10,680,708
INFO 2026-06-03 19:53:58 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr5:14,712,880
INFO 2026-06-03 19:53:59 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr5:37,443,264
INFO 2026-06-03 19:54:01 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr5:54,518,193
INFO 2026-06-03 19:54:03 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr5:66,155,025
INFO 2026-06-03 19:54:04 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr5:72,193,955
INFO 2026-06-03 19:54:06 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr5:80,255,882
INFO 2026-06-03 19:54:07 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr5:93,587,962
INFO 2026-06-03 19:54:09 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr5:109,713,604
INFO 2026-06-03 19:54:10 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr5:128,174,614
INFO 2026-06-03 19:54:11 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr5:134,609,645
INFO 2026-06-03 19:54:13 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr5:138,930,843
INFO 2026-06-03 19:54:14 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr5:141,179,363
INFO 2026-06-03 19:54:16 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr5:142,873,424
INFO 2026-06-03 19:54:17 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr5:150,117,826
INFO 2026-06-03 19:54:19 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,566
INFO 2026-06-03 19:54:21 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr5:150,405,109
INFO 2026-06-03 19:54:22 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr5:150,406,909
INFO 2026-06-03 19:54:24 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr5:150,649,643
INFO 2026-06-03 19:54:25 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr5:154,794,226
INFO 2026-06-03 19:54:27 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr5:170,248,665
INFO 2026-06-03 19:54:28 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr5:172,950,558
INFO 2026-06-03 19:54:29 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr5:177,524,820
INFO 2026-06-03 19:54:31 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr5:179,774,794
INFO 2026-06-03 19:54:32 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr5:180,792,046
INFO 2026-06-03 19:54:34 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr6:6,145,630
INFO 2026-06-03 19:54:35 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr6:13,615,521
INFO 2026-06-03 19:54:36 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr6:26,124,571
INFO 2026-06-03 19:54:38 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr6:29,723,529
INFO 2026-06-03 19:54:40 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr6:30,490,344
INFO 2026-06-03 19:54:41 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr6:31,137,891
INFO 2026-06-03 19:54:43 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr6:31,626,829
INFO 2026-06-03 19:54:44 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr6:31,816,967
INFO 2026-06-03 19:54:45 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr6:31,995,421
INFO 2026-06-03 19:54:47 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr6:32,192,176
INFO 2026-06-03 19:54:49 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr6:32,852,415
INFO 2026-06-03 19:54:50 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr6:33,289,123
INFO 2026-06-03 19:54:52 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr6:34,244,875
INFO 2026-06-03 19:54:54 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr6:37,005,804
INFO 2026-06-03 19:54:56 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr6:43,037,636
INFO 2026-06-03 19:54:57 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr6:44,254,740
INFO 2026-06-03 19:54:59 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr6:56,459,059
INFO 2026-06-03 19:55:01 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr6:75,183,903
INFO 2026-06-03 19:55:03 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr6:89,081,394
INFO 2026-06-03 19:55:04 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr6:106,971,631
INFO 2026-06-03 19:55:06 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr6:113,860,441
INFO 2026-06-03 19:55:07 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr6:128,397,601
INFO 2026-06-03 19:55:09 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr6:137,878,468
INFO 2026-06-03 19:55:11 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr6:146,062,065
INFO 2026-06-03 19:55:12 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr6:153,282,490
INFO 2026-06-03 19:55:14 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr6:158,783,557
INFO 2026-06-03 19:55:15 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr6:159,693,172
INFO 2026-06-03 19:55:17 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr6:168,509,962
INFO 2026-06-03 19:55:19 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr7:2,362,749
INFO 2026-06-03 19:55:20 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr7:5,527,684
INFO 2026-06-03 19:55:22 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,303
INFO 2026-06-03 19:55:24 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr7:16,627,102
INFO 2026-06-03 19:55:25 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr7:26,197,662
INFO 2026-06-03 19:55:27 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr7:39,505,463
INFO 2026-06-03 19:55:28 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr7:44,571,632
INFO 2026-06-03 19:55:30 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr7:55,152,559
INFO 2026-06-03 19:55:32 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr7:67,281,303
INFO 2026-06-03 19:55:33 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr7:73,769,510
INFO 2026-06-03 19:55:35 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr7:75,389,636
INFO 2026-06-03 19:55:36 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr7:76,497,411
INFO 2026-06-03 19:55:38 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr7:90,412,687
INFO 2026-06-03 19:55:39 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr7:96,278,347
INFO 2026-06-03 19:55:41 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr7:99,892,153
INFO 2026-06-03 19:55:42 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr7:100,813,672
INFO 2026-06-03 19:55:43 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr7:102,483,851
INFO 2026-06-03 19:55:44 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr7:103,075,395
INFO 2026-06-03 19:55:46 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr7:107,926,303
INFO 2026-06-03 19:55:47 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr7:127,652,421
INFO 2026-06-03 19:55:49 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr7:130,173,636
INFO 2026-06-03 19:55:50 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr7:138,916,855
INFO 2026-06-03 19:55:52 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 2s. Last read position: chr7:142,802,171
INFO 2026-06-03 19:55:54 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr7:149,012,151
INFO 2026-06-03 19:55:55 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr7:151,076,287
INFO 2026-06-03 19:55:56 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr7:157,181,629
INFO 2026-06-03 19:55:57 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr8:11,849,065
INFO 2026-06-03 19:55:59 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr8:22,417,698
INFO 2026-06-03 19:56:01 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr8:26,408,026
INFO 2026-06-03 19:56:03 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr8:33,412,952
INFO 2026-06-03 19:56:04 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr8:38,819,851
INFO 2026-06-03 19:56:06 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr8:42,316,743
INFO 2026-06-03 19:56:08 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr8:55,782,752
INFO 2026-06-03 19:56:09 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr8:67,299,248
INFO 2026-06-03 19:56:11 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr8:80,641,448
INFO 2026-06-03 19:56:12 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr8:98,715,296
INFO 2026-06-03 19:56:14 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr8:102,305,111
INFO 2026-06-03 19:56:16 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr8:120,283,765
INFO 2026-06-03 19:56:17 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr8:133,284,293
INFO 2026-06-03 19:56:19 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr8:143,580,190
INFO 2026-06-03 19:56:20 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,323
INFO 2026-06-03 19:56:22 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,685
INFO 2026-06-03 19:56:23 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr8:143,919,811
INFO 2026-06-03 19:56:25 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr8:144,096,484
INFO 2026-06-03 19:56:27 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr9:311,951
INFO 2026-06-03 19:56:28 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr9:9,442,159
INFO 2026-06-03 19:56:30 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr9:32,448,901
INFO 2026-06-03 19:56:32 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr9:35,045,625
INFO 2026-06-03 19:56:33 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr9:35,829,546
INFO 2026-06-03 19:56:35 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr9:69,252,817
INFO 2026-06-03 19:56:37 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr9:86,035,493
INFO 2026-06-03 19:56:39 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr9:93,557,846
INFO 2026-06-03 19:56:40 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr9:101,408,060
INFO 2026-06-03 19:56:42 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr9:111,727,870
INFO 2026-06-03 19:56:44 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr9:115,031,614
INFO 2026-06-03 19:56:45 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr9:121,341,144
INFO 2026-06-03 19:56:47 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr9:125,929,746
INFO 2026-06-03 19:56:49 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr9:128,149,515
INFO 2026-06-03 19:56:50 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr9:128,607,603
INFO 2026-06-03 19:56:52 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr9:130,452,311
INFO 2026-06-03 19:56:54 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr9:131,467,644
INFO 2026-06-03 19:56:56 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr9:133,367,382
INFO 2026-06-03 19:56:57 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr9:136,418,829
INFO 2026-06-03 19:56:59 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr9:136,979,055
INFO 2026-06-03 19:57:01 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr10:384,586
INFO 2026-06-03 19:57:02 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr10:7,576,963
INFO 2026-06-03 19:57:04 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr10:20,001,921
INFO 2026-06-03 19:57:06 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr10:30,029,574
INFO 2026-06-03 19:57:07 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr10:35,010,336
INFO 2026-06-03 19:57:09 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr10:46,011,104
INFO 2026-06-03 19:57:11 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr10:51,699,452
INFO 2026-06-03 19:57:12 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr10:68,989,216
INFO 2026-06-03 19:57:13 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr10:73,426,280
INFO 2026-06-03 19:57:15 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr10:78,035,362
INFO 2026-06-03 19:57:17 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr10:86,970,219
INFO 2026-06-03 19:57:19 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr10:92,974,115
INFO 2026-06-03 19:57:20 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr10:97,385,961
INFO 2026-06-03 19:57:22 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr10:101,990,551
INFO 2026-06-03 19:57:24 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr10:103,440,431
INFO 2026-06-03 19:57:26 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr10:114,847,094
INFO 2026-06-03 19:57:27 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr10:121,843,594
INFO 2026-06-03 19:57:29 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr10:128,077,685
INFO 2026-06-03 19:57:30 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr11:314,282
INFO 2026-06-03 19:57:32 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr11:609,593
INFO 2026-06-03 19:57:34 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr11:1,763,814
INFO 2026-06-03 19:57:35 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr11:4,518,655
INFO 2026-06-03 19:57:37 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr11:8,684,808
INFO 2026-06-03 19:57:39 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr11:10,804,402
INFO 2026-06-03 19:57:40 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr11:18,333,131
INFO 2026-06-03 19:57:42 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr11:34,357,460
INFO 2026-06-03 19:57:44 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr11:46,311,124
INFO 2026-06-03 19:57:45 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr11:47,754,505
INFO 2026-06-03 19:57:46 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr11:57,796,504
INFO 2026-06-03 19:57:47 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr11:61,008,451
INFO 2026-06-03 19:57:49 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr11:62,521,999
INFO 2026-06-03 19:57:50 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr11:62,596,477
INFO 2026-06-03 19:57:52 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr11:63,904,856
INFO 2026-06-03 19:57:53 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr11:64,769,988
INFO 2026-06-03 19:57:55 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 1s. Last read position: chr11:65,500,971
INFO 2026-06-03 19:57:56 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr11:65,654,724
INFO 2026-06-03 19:57:58 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 1s. Last read position: chr11:66,235,315
INFO 2026-06-03 19:57:59 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr11:67,353,191
INFO 2026-06-03 19:58:00 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 1s. Last read position: chr11:68,596,182
INFO 2026-06-03 19:58:02 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 1s. Last read position: chr11:72,017,751
INFO 2026-06-03 19:58:03 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr11:74,835,886
INFO 2026-06-03 19:58:04 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr11:82,689,773
INFO 2026-06-03 19:58:06 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 1s. Last read position: chr11:95,129,379
INFO 2026-06-03 19:58:07 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 1s. Last read position: chr11:105,029,190
INFO 2026-06-03 19:58:09 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 1s. Last read position: chr11:117,152,513
INFO 2026-06-03 19:58:11 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 1s. Last read position: chr11:118,534,527
INFO 2026-06-03 19:58:12 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 1s. Last read position: chr11:119,665,033
INFO 2026-06-03 19:58:14 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 1s. Last read position: chr11:124,624,959
INFO 2026-06-03 19:58:15 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 1s. Last read position: chr11:130,109,446
INFO 2026-06-03 19:58:17 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 1s. Last read position: chr12:1,593,068
INFO 2026-06-03 19:58:19 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 1s. Last read position: chr12:6,329,794
INFO 2026-06-03 19:58:20 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 1s. Last read position: chr12:6,856,245
INFO 2026-06-03 19:58:22 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 1s. Last read position: chr12:7,088,709
INFO 2026-06-03 19:58:24 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 1s. Last read position: chr12:9,072,658
INFO 2026-06-03 19:58:25 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 1s. Last read position: chr12:9,755,175
INFO 2026-06-03 19:58:26 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 1s. Last read position: chr12:14,787,164
INFO 2026-06-03 19:58:27 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 1s. Last read position: chr12:27,676,427
INFO 2026-06-03 19:58:29 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 1s. Last read position: chr12:46,361,128
INFO 2026-06-03 19:58:31 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 1s. Last read position: chr12:49,041,234
INFO 2026-06-03 19:58:32 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 1s. Last read position: chr12:49,741,601
INFO 2026-06-03 19:58:33 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 1s. Last read position: chr12:52,235,250
INFO 2026-06-03 19:58:35 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 1s. Last read position: chr12:53,455,354
INFO 2026-06-03 19:58:36 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 1s. Last read position: chr12:54,520,785
INFO 2026-06-03 19:58:38 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 1s. Last read position: chr12:56,160,242
INFO 2026-06-03 19:58:40 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 1s. Last read position: chr12:56,712,826
INFO 2026-06-03 19:58:42 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 1s. Last read position: chr12:57,104,800
INFO 2026-06-03 19:58:44 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr12:57,199,977
INFO 2026-06-03 19:58:45 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 1s. Last read position: chr12:57,751,640
INFO 2026-06-03 19:58:47 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 1s. Last read position: chr12:68,839,333
INFO 2026-06-03 19:58:49 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr12:89,349,305
INFO 2026-06-03 19:58:51 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr12:96,013,204
INFO 2026-06-03 19:58:53 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr12:105,107,804
INFO 2026-06-03 19:58:54 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 1s. Last read position: chr12:110,340,796
INFO 2026-06-03 19:58:56 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr12:112,907,049
INFO 2026-06-03 19:58:58 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr12:118,034,228
INFO 2026-06-03 19:59:00 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr12:121,240,336
INFO 2026-06-03 19:59:02 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr12:122,988,730
INFO 2026-06-03 19:59:03 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr12:131,714,837
INFO 2026-06-03 19:59:05 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr13:19,659,016
INFO 2026-06-03 19:59:06 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr13:27,440,167
INFO 2026-06-03 19:59:08 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr13:40,665,840
INFO 2026-06-03 19:59:10 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr13:46,728,861
INFO 2026-06-03 19:59:12 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr13:75,481,564
INFO 2026-06-03 19:59:14 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr13:98,474,856
INFO 2026-06-03 19:59:16 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr13:110,478,043
INFO 2026-06-03 19:59:18 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr14:20,408,340
INFO 2026-06-03 19:59:19 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr14:22,813,301
INFO 2026-06-03 19:59:20 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr14:23,638,867
INFO 2026-06-03 19:59:22 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr14:24,369,245
INFO 2026-06-03 19:59:24 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr14:35,402,001
INFO 2026-06-03 19:59:26 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr14:49,862,590
INFO 2026-06-03 19:59:27 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr14:55,639,193
INFO 2026-06-03 19:59:29 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr14:64,055,986
INFO 2026-06-03 19:59:31 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr14:68,790,377
INFO 2026-06-03 19:59:33 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr14:73,148,036
INFO 2026-06-03 19:59:34 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr14:75,117,304
INFO 2026-06-03 19:59:36 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr14:90,404,377
INFO 2026-06-03 19:59:38 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr14:95,113,204
INFO 2026-06-03 19:59:40 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr14:102,001,332
INFO 2026-06-03 19:59:42 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr14:103,130,055
INFO 2026-06-03 19:59:44 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr14:105,145,734
INFO 2026-06-03 19:59:46 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,384
INFO 2026-06-03 19:59:48 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr15:23,687,028
INFO 2026-06-03 19:59:49 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr15:32,731,624
INFO 2026-06-03 19:59:51 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr15:39,593,123
INFO 2026-06-03 19:59:57 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 5s. Last read position: chr15:41,818,033
INFO 2026-06-03 20:00:00 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 2s. Last read position: chr15:43,768,489
INFO 2026-06-03 20:00:02 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr15:45,095,881
INFO 2026-06-03 20:00:04 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr15:45,113,058
INFO 2026-06-03 20:00:05 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr15:50,575,044
INFO 2026-06-03 20:00:07 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr15:58,611,845
INFO 2026-06-03 20:00:09 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr15:63,632,727
INFO 2026-06-03 20:00:11 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr15:66,487,273
INFO 2026-06-03 20:00:12 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr15:72,207,163
INFO 2026-06-03 20:00:14 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr15:74,035,895
INFO 2026-06-03 20:00:16 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr15:76,795,289
INFO 2026-06-03 20:00:17 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr15:82,372,498
INFO 2026-06-03 20:00:19 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr15:88,467,761
INFO 2026-06-03 20:00:20 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr15:90,904,298
INFO 2026-06-03 20:00:22 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr16:16,313
INFO 2026-06-03 20:00:24 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr16:1,241,848
INFO 2026-06-03 20:00:26 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr16:2,099,973
INFO 2026-06-03 20:00:27 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr16:2,765,264
INFO 2026-06-03 20:00:29 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr16:3,727,930
INFO 2026-06-03 20:00:30 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr16:8,859,201
INFO 2026-06-03 20:00:32 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr16:11,927,747
INFO 2026-06-03 20:00:34 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr16:14,975,106
INFO 2026-06-03 20:00:35 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr16:15,759,614
INFO 2026-06-03 20:00:37 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr16:16,369,417
INFO 2026-06-03 20:00:38 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr16:18,519,511
INFO 2026-06-03 20:00:40 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr16:21,403,285
INFO 2026-06-03 20:00:41 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr16:21,843,693
INFO 2026-06-03 20:00:43 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr16:22,536,170
INFO 2026-06-03 20:00:45 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr16:28,107,588
INFO 2026-06-03 20:00:46 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr16:29,076,670
INFO 2026-06-03 20:00:48 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr16:29,806,865
INFO 2026-06-03 20:00:50 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr16:30,193,544
INFO 2026-06-03 20:00:51 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr16:30,707,673
INFO 2026-06-03 20:00:52 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr16:31,185,119
INFO 2026-06-03 20:00:54 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr16:48,562,107
INFO 2026-06-03 20:00:55 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr16:55,509,192
INFO 2026-06-03 20:00:57 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr16:57,651,603
INFO 2026-06-03 20:00:59 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr16:67,230,479
INFO 2026-06-03 20:01:01 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr16:68,878,167
INFO 2026-06-03 20:01:02 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr16:70,681,002
INFO 2026-06-03 20:01:04 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr16:75,568,105
INFO 2026-06-03 20:01:05 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr16:84,877,436
INFO 2026-06-03 20:01:07 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr16:88,655,268
INFO 2026-06-03 20:01:09 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr16:89,710,922
INFO 2026-06-03 20:01:11 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr17:1,365,032
INFO 2026-06-03 20:01:12 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr17:2,057,625
INFO 2026-06-03 20:01:14 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr17:4,539,456
INFO 2026-06-03 20:01:16 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr17:5,023,656
INFO 2026-06-03 20:01:17 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr17:7,309,672
INFO 2026-06-03 20:01:19 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr17:7,574,560
INFO 2026-06-03 20:01:20 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr17:7,930,621
INFO 2026-06-03 20:01:22 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr17:16,058,577
INFO 2026-06-03 20:01:24 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 2s. Last read position: chr17:17,813,379
INFO 2026-06-03 20:01:26 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr17:20,227,604
INFO 2026-06-03 20:01:27 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr17:28,635,391
INFO 2026-06-03 20:01:29 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr17:29,632,581
INFO 2026-06-03 20:01:31 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr17:34,256,794
INFO 2026-06-03 20:01:32 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr17:36,297,347
INFO 2026-06-03 20:01:34 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr17:38,467,264
INFO 2026-06-03 20:01:36 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr17:39,653,657
INFO 2026-06-03 20:01:38 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr17:40,094,963
INFO 2026-06-03 20:01:39 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr17:41,690,837
INFO 2026-06-03 20:01:40 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr17:42,404,951
INFO 2026-06-03 20:01:42 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr17:44,091,133
INFO 2026-06-03 20:01:43 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr17:45,405,976
INFO 2026-06-03 20:01:45 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr17:47,813,391
INFO 2026-06-03 20:01:47 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,370
INFO 2026-06-03 20:01:49 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,663
INFO 2026-06-03 20:01:50 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,273
INFO 2026-06-03 20:01:52 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr17:57,873,598
INFO 2026-06-03 20:01:53 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr17:59,685,100
INFO 2026-06-03 20:01:55 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr17:63,714,099
INFO 2026-06-03 20:01:57 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr17:65,549,567
INFO 2026-06-03 20:01:58 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr17:68,983,766
INFO 2026-06-03 20:02:00 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr17:75,563,088
INFO 2026-06-03 20:02:01 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr17:76,008,940
INFO 2026-06-03 20:02:03 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr17:78,103,421
INFO 2026-06-03 20:02:05 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr17:80,140,129
INFO 2026-06-03 20:02:06 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr17:80,363,258
INFO 2026-06-03 20:02:08 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr17:81,681,862
INFO 2026-06-03 20:02:09 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr17:82,088,124
INFO 2026-06-03 20:02:10 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr18:2,784,501
INFO 2026-06-03 20:02:12 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr18:9,954,095
INFO 2026-06-03 20:02:13 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr18:26,032,415
INFO 2026-06-03 20:02:14 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr18:46,091,742
INFO 2026-06-03 20:02:15 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr18:57,655,224
INFO 2026-06-03 20:02:17 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr18:74,510,959
INFO 2026-06-03 20:02:19 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr19:810,563
INFO 2026-06-03 20:02:21 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr19:1,116,036
INFO 2026-06-03 20:02:22 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr19:1,816,077
INFO 2026-06-03 20:02:24 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr19:2,997,744
INFO 2026-06-03 20:02:26 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr19:4,447,477
INFO 2026-06-03 20:02:28 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr19:5,691,333
INFO 2026-06-03 20:02:30 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr19:6,712,528
INFO 2026-06-03 20:02:31 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr19:7,879,799
INFO 2026-06-03 20:02:33 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr19:8,966,991
INFO 2026-06-03 20:02:35 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr19:10,395,981
INFO 2026-06-03 20:02:36 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr19:11,214,581
INFO 2026-06-03 20:02:38 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr19:12,791,779
INFO 2026-06-03 20:02:40 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr19:14,097,601
INFO 2026-06-03 20:02:42 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr19:15,238,828
INFO 2026-06-03 20:02:43 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr19:16,111,967
INFO 2026-06-03 20:02:45 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr19:17,578,033
INFO 2026-06-03 20:02:47 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr19:18,431,817
INFO 2026-06-03 20:02:48 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr19:19,528,079
INFO 2026-06-03 20:02:50 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr19:34,399,565
INFO 2026-06-03 20:02:52 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr19:35,738,282
INFO 2026-06-03 20:02:53 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr19:38,632,429
INFO 2026-06-03 20:02:55 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr19:39,433,519
INFO 2026-06-03 20:02:57 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr19:39,895,933
INFO 2026-06-03 20:02:58 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr19:40,605,774
INFO 2026-06-03 20:03:00 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr19:41,708,755
INFO 2026-06-03 20:03:02 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr19:42,287,160
INFO 2026-06-03 20:03:03 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr19:44,748,817
INFO 2026-06-03 20:03:05 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr19:45,524,632
INFO 2026-06-03 20:03:07 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr19:47,072,019
INFO 2026-06-03 20:03:09 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr19:48,800,188
INFO 2026-06-03 20:03:10 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr19:49,497,580
INFO 2026-06-03 20:03:12 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr19:49,890,454
INFO 2026-06-03 20:03:14 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr19:52,225,738
INFO 2026-06-03 20:03:16 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr19:54,276,861
INFO 2026-06-03 20:03:17 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr19:55,245,557
INFO 2026-06-03 20:03:19 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr19:57,747,005
INFO 2026-06-03 20:03:21 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr20:489,816
INFO 2026-06-03 20:03:22 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr20:3,784,637
INFO 2026-06-03 20:03:24 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr20:17,614,736
INFO 2026-06-03 20:03:26 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr20:23,633,847
INFO 2026-06-03 20:03:28 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr20:33,848,525
INFO 2026-06-03 20:03:29 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr20:35,858,309
INFO 2026-06-03 20:03:31 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr20:38,541,060
INFO 2026-06-03 20:03:33 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr20:45,363,668
INFO 2026-06-03 20:03:34 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr20:48,720,476
INFO 2026-06-03 20:03:36 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr20:51,690,783
INFO 2026-06-03 20:03:38 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr20:59,994,330
INFO 2026-06-03 20:03:39 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr20:62,909,819
INFO 2026-06-03 20:03:41 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr21:5,022,238
INFO 2026-06-03 20:03:43 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,921
INFO 2026-06-03 20:03:44 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr21:8,260,313
INFO 2026-06-03 20:03:46 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr21:8,411,289
INFO 2026-06-03 20:03:48 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,592
INFO 2026-06-03 20:03:49 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr21:29,048,761
INFO 2026-06-03 20:03:51 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr21:33,554,021
INFO 2026-06-03 20:03:53 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr21:38,818,550
INFO 2026-06-03 20:03:54 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr21:43,659,647
INFO 2026-06-03 20:03:56 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr21:45,494,897
INFO 2026-06-03 20:03:58 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr21:46,346,753
INFO 2026-06-03 20:03:59 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr22:20,140,886
INFO 2026-06-03 20:04:01 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr22:23,290,374
INFO 2026-06-03 20:04:03 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr22:28,795,636
INFO 2026-06-03 20:04:04 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr22:29,570,456
INFO 2026-06-03 20:04:06 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr22:32,399,648
INFO 2026-06-03 20:04:07 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr22:36,292,217
INFO 2026-06-03 20:04:09 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr22:37,568,315
INFO 2026-06-03 20:04:11 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr22:38,506,127
INFO 2026-06-03 20:04:12 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr22:40,418,821
INFO 2026-06-03 20:04:14 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr22:42,068,482
INFO 2026-06-03 20:04:16 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr22:45,541,361
INFO 2026-06-03 20:04:17 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr22:50,250,442
INFO 2026-06-03 20:04:18 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr22:50,530,460
INFO 2026-06-03 20:04:20 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chrX:3,324,418
INFO 2026-06-03 20:04:21 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chrX:20,138,567
INFO 2026-06-03 20:04:23 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chrX:40,600,818
INFO 2026-06-03 20:04:25 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chrX:47,247,184
INFO 2026-06-03 20:04:26 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chrX:49,071,889
INFO 2026-06-03 20:04:28 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chrX:53,583,821
INFO 2026-06-03 20:04:30 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chrX:69,162,858
INFO 2026-06-03 20:04:31 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chrX:74,521,122
INFO 2026-06-03 20:04:33 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chrX:101,391,551
INFO 2026-06-03 20:04:34 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chrX:116,445,455
INFO 2026-06-03 20:04:35 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chrX:133,985,388
INFO 2026-06-03 20:04:37 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chrX:153,798,127
INFO 2026-06-03 20:04:38 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chrX:154,361,356
INFO 2026-06-03 20:04:40 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chrX:154,957,059
INFO 2026-06-03 20:04:42 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: GL000220.1:111,362
INFO 2026-06-03 20:04:43 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: GL000220.1:150,438
INFO 2026-06-03 20:04:45 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: GL000220.1:160,841
INFO 2026-06-03 20:04:47 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,613
INFO 2026-06-03 20:04:48 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,250
INFO 2026-06-03 20:04:50 RExecutor Executing R script via command: Rscript /tmp/script825146517346917503.R /tmp/nxf.XXXXrhPzwQ/aih-tih-sc-3282fd-R1_A23YTGFLT4_1_collectinsertsize.txt /tmp/nxf.XXXXrhPzwQ/aih-tih-sc-3282fd-R1_A23YTGFLT4_1_collectinsertsize.pdf aih-tih-sc-3282fd-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
ERROR 2026-06-03 20:04:50 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 20:04:50 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 20:04:50 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 20:04:50 ProcessExecutor During startup - Warning messages:
ERROR 2026-06-03 20:04:50 ProcessExecutor 1: Setting LC_CTYPE failed, using "C"
ERROR 2026-06-03 20:04:50 ProcessExecutor 2: Setting LC_COLLATE failed, using "C"
ERROR 2026-06-03 20:04:50 ProcessExecutor 3: Setting LC_TIME failed, using "C"
ERROR 2026-06-03 20:04:50 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C"
ERROR 2026-06-03 20:04:50 ProcessExecutor 5: Setting LC_MONETARY failed, using "C"
ERROR 2026-06-03 20:04:50 ProcessExecutor 6: Setting LC_PAPER failed, using "C"
ERROR 2026-06-03 20:04:50 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C"
INFO 2026-06-03 20:04:50 ProcessExecutor null device
INFO 2026-06-03 20:04:50 ProcessExecutor 1
ERROR 2026-06-03 20:04:50 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
[Wed Jun 03 20:04:50 GMT 2026] picard.analysis.CollectInsertSizeMetrics done. Elapsed time: 14.30 minutes.
Runtime.totalMemory()=413138944