File Info

Filename
aih-tih-sc-776623-R1_A23YTGFLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/e9ffab8dd22913a470ae3910d7447e/aih-tih-sc-776623-R1_A23YTGFLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 03 19:30:06
                             Started mapping on |	Jun 03 19:31:37
                                    Finished on |	Jun 03 20:58:17
       Mapping speed, Million of reads per hour |	205.48

                          Number of input reads |	296801809
                      Average input read length |	247
                                    UNIQUE READS:
                   Uniquely mapped reads number |	283576663
                        Uniquely mapped reads % |	95.54%
                          Average mapped length |	246.69
                       Number of splices: Total |	322074610
            Number of splices: Annotated (sjdb) |	318500912
                       Number of splices: GT/AG |	319320164
                       Number of splices: GC/AG |	1980071
                       Number of splices: AT/AC |	208453
               Number of splices: Non-canonical |	565922
                      Mismatch rate per base, % |	0.22%
                         Deletion rate per base |	0.00%
                        Deletion average length |	1.08
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.68
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	7822739
             % of reads mapped to multiple loci |	2.64%
        Number of reads mapped to too many loci |	356222
             % of reads mapped to too many loci |	0.12%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	524770
       % of reads unmapped: too many mismatches |	0.18%
            Number of reads unmapped: too short |	2081928
                 % of reads unmapped: too short |	0.70%
                Number of reads unmapped: other |	239513
                     % of reads unmapped: other |	0.08%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3682486
                            % of chimeric reads |	1.24%