Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/2763a06b5c04d0976deca96c7c86bd/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/2763a06b5c04d0976deca96c7c86bd/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/74bc80209e079a687f6a7767a2a825/aih-tih-sc-13d441-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/d0c487697dc4a2d8bcd96a327dedc7/aih-tih-sc-13d441-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-13d441-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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