File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/c6a0e4c754968be8dbbb263981aa98/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 03 21:42:37
                             Started mapping on |	Jun 03 21:49:12
                                    Finished on |	Jun 03 22:46:58
       Mapping speed, Million of reads per hour |	307.73

                          Number of input reads |	296271835
                      Average input read length |	264
                                    UNIQUE READS:
                   Uniquely mapped reads number |	280313710
                        Uniquely mapped reads % |	94.61%
                          Average mapped length |	263.63
                       Number of splices: Total |	284300454
            Number of splices: Annotated (sjdb) |	279354930
                       Number of splices: GT/AG |	280774391
                       Number of splices: GC/AG |	2128546
                       Number of splices: AT/AC |	218148
               Number of splices: Non-canonical |	1179369
                      Mismatch rate per base, % |	0.21%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.98
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.92
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	11952581
             % of reads mapped to multiple loci |	4.03%
        Number of reads mapped to too many loci |	974029
             % of reads mapped to too many loci |	0.33%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2475897
                 % of reads unmapped: too short |	0.84%
                Number of reads unmapped: other |	555618
                     % of reads unmapped: other |	0.19%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%