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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/0493fcb7b21c1d8672853247ddd4c0/aih-tih-sc-01eb49-R1_A23YTGFLT4_1_contamination_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/b7036ad6499dc3e56c33f04f794f0d/aih-tih-sc-56cab8-R1_A23YTGFLT4_1.pos.DupRate.xls
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/314287270cfb20b8d9168e202ef232/aih-tih-sc-992d78-R1_A23YTGFLT4_1.Log.final.out
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/629011ca7eaa268fffaeb5257c209b/FFPE_V4_0002_RNA_0002_A23YTGFLT4_1_collectinsertsize.txt
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==> STAGING COMPLETE (2594 inputs)


  /// MultiQC 🔍 | v1.21

|           multiqc | MultiQC Version v1.35 now available!
|           multiqc | Module(s) in config.run_modules are unknown: arriba
|           multiqc | Only using modules: custom_content, fastqc, fastp, star, samtools, picard, kallisto, rseqc, preseq
|           multiqc | Search path : /tmp/nxf.YsZJLmw3Oe
|         searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 2629/2629  
|    custom_content | preseq_metrics: Found 96 General Statistics columns
|    custom_content | kallisto_qc_metrics: Found 96 General Statistics columns
|    custom_content | rna_contamination: Found 96 General Statistics columns
|    custom_content | seqtools_metrics: Found 96 General Statistics columns
|    custom_content | rseqc_extra_metrics: Found 96 General Statistics columns
|    custom_content | nf-core-rnafusion-methods-description: Found 1 sample (html)
|    custom_content | nf-core-rnafusion-summary: Found 1 sample (html)
|          kallisto | Found 96 reports
|            picard | Found 96 InsertSizeMetrics reports
|            picard | Found 96 MarkDuplicates reports
|            picard | Found 96 RnaSeqMetrics reports
|            preseq | Found 96 reports
|             rseqc | Found 96 read_distribution reports
|             rseqc | Found 96 inner_distance reports
|             rseqc | Found 96 read_duplication reports
|             rseqc | Found 96 junction_annotation reports
|             rseqc | Found 96 junction_saturation reports
|             rseqc | Found 96 infer_experiment reports
|             rseqc | Found 96 bam_stat reports
|              star | Found 96 reports and 96 gene count files
|             fastp | Found 96 reports
|            fastqc | Found 384 reports
|            fastqc | Found 192 reports
|           multiqc | Report      : multiqc_report.html
|           multiqc | Data        : multiqc_data
|           multiqc | Plots       : multiqc_plots
|           multiqc | MultiQC complete