Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/878df2cafef0173d376474ec0ab941/aih-tih-sc-7f9674-R1_A23YTGFLT4_1_2.fastp.fastq.gz Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/ensembl/Homo_sapiens.GRCh38.102.gtf Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/878df2cafef0173d376474ec0ab941/aih-tih-sc-7f9674-R1_A23YTGFLT4_1_1.fastp.fastq.gz Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/3ce7cae19571e51cd55b3129fc1b9a/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/bfeb5bd805f2a57d79d9ba5bc527b3/kallisto Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/3ce7cae19571e51cd55b3129fc1b9a/.command.run ==> STAGING COMPLETE (6 inputs) [quant] fragment length distribution will be estimated from the data [index] k-mer length: 31 [index] number of targets: 194,360 [index] number of k-mers: 112,035,259 [quant] running in paired-end mode [quant] will process pair 1: aih-tih-sc-7f9674-R1_A23YTGFLT4_1_1.fastp.fastq.gz aih-tih-sc-7f9674-R1_A23YTGFLT4_1_2.fastp.fastq.gz [quant] finding pseudoalignments for the reads ... 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