File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/868a729956b46ceb4b7da8fbe91b8a/.command.log
Size
8.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-3270ab-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/99d0672779bf9e1cdc460a3e6558cc/aih-tih-sc-3270ab-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e543dae6-5fea-4720-bfb6-150bf1ff20d4/82/1bfcba5045fc10a52ca200a4890a9a/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/868a729956b46ceb4b7da8fbe91b8a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/683ec478cd31a9d09da300d83bcc9e/aih-tih-sc-3270ab-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/868a729956b46ceb4b7da8fbe91b8a/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
ZSWIM6--CFTR
starfusion
arriba
ZNF318--DST
starfusion
arriba
PRSS27--TPSB2
starfusion
ABLIM1--WAPL
starfusion
arriba
SRSF3--UHRF1BP1
starfusion
UHRF1BP1--EYS
starfusion
arriba
TLK2--AL669831.1
starfusion
TAF15--AP2B1
starfusion
STX16--NPEPL1
starfusion
arriba
TRPM4--TRPM4
arriba
GSR--AC068672.1
arriba
GSR--AC090816.1
arriba
TMEM181--TMEM181
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA9
arriba
TVP23C--CDRT4
arriba
GSR--NRG1
arriba
GSR--NRG1-IT3
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHA13
arriba
SEC24B--CDKL2
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHA13
arriba
LRP12--ZFPM2
arriba
MLKL--CHSY1
arriba
MLKL--SELENOS
arriba
KLRC4--KLRK1
arriba
MACROD2--NRG1
arriba

  0%|          | 0/38 [00:00<?, ?it/s]
Processing ZSWIM6--CFTR:   0%|          | 0/38 [00:00<?, ?it/s]
Processing ZSWIM6--CFTR:   3%|▎         | 1/38 [00:00<00:04,  8.10it/s]
Processing ZNF318--DST:   3%|▎         | 1/38 [00:00<00:04,  8.10it/s] 
Processing ZNF318--DST:   5%|▌         | 2/38 [00:00<00:04,  8.67it/s]
Processing PRSS27--TPSB2:   5%|▌         | 2/38 [00:00<00:04,  8.67it/s]
Processing PRSS27--TPSB2:   8%|▊         | 3/38 [00:00<00:03,  8.87it/s]
Processing ABLIM1--WAPL:   8%|▊         | 3/38 [00:00<00:03,  8.87it/s] 
Processing ABLIM1--WAPL:  11%|█         | 4/38 [00:00<00:03,  8.96it/s]
Processing SRSF3--UHRF1BP1:  11%|█         | 4/38 [00:00<00:03,  8.96it/s]
Processing SRSF3--UHRF1BP1:  13%|█▎        | 5/38 [00:00<00:03,  9.02it/s]
Processing UHRF1BP1--EYS:  13%|█▎        | 5/38 [00:00<00:03,  9.02it/s]  
Processing UHRF1BP1--EYS:  16%|█▌        | 6/38 [00:00<00:03,  9.05it/s]
Processing TLK2--AL669831.1:  16%|█▌        | 6/38 [00:00<00:03,  9.05it/s]
Processing TLK2--AL669831.1:  18%|█▊        | 7/38 [00:00<00:03,  9.08it/s]
Processing TAF15--AP2B1:  18%|█▊        | 7/38 [00:00<00:03,  9.08it/s]    
Processing TAF15--AP2B1:  21%|██        | 8/38 [00:00<00:03,  9.10it/s]
Processing STX16--NPEPL1:  21%|██        | 8/38 [00:00<00:03,  9.10it/s]
Processing STX16--NPEPL1:  24%|██▎       | 9/38 [00:01<00:03,  9.11it/s]
Processing TRPM4--TRPM4:  24%|██▎       | 9/38 [00:01<00:03,  9.11it/s] 
Processing TRPM4--TRPM4:  26%|██▋       | 10/38 [00:01<00:03,  9.11it/s]
Processing GSR--AC068672.1:  26%|██▋       | 10/38 [00:01<00:03,  9.11it/s]
Processing GSR--AC068672.1:  29%|██▉       | 11/38 [00:01<00:02,  9.11it/s]
Processing GSR--AC090816.1:  29%|██▉       | 11/38 [00:01<00:02,  9.11it/s]
Processing GSR--AC090816.1:  32%|███▏      | 12/38 [00:01<00:02,  9.12it/s]
Processing TMEM181--TMEM181:  32%|███▏      | 12/38 [00:01<00:02,  9.12it/s]
Processing TMEM181--TMEM181:  34%|███▍      | 13/38 [00:01<00:02,  9.18it/s]
Processing PCDHGB2--PCDHGA8:  34%|███▍      | 13/38 [00:01<00:02,  9.18it/s]
Processing PCDHGB2--PCDHGA8:  37%|███▋      | 14/38 [00:01<00:02,  9.10it/s]
Processing PCDHGB2--PCDHGC4:  37%|███▋      | 14/38 [00:01<00:02,  9.10it/s]
Processing PCDHGB2--PCDHGC4:  39%|███▉      | 15/38 [00:01<00:02,  9.17it/s]
Processing PCDHGB2--PCDHGC3:  39%|███▉      | 15/38 [00:01<00:02,  9.17it/s]
Processing PCDHGB2--PCDHGC3:  42%|████▏     | 16/38 [00:01<00:02,  9.22it/s]
Processing PCDHGB2--PCDHGA11:  42%|████▏     | 16/38 [00:01<00:02,  9.22it/s]
Processing PCDHGB2--PCDHGA11:  45%|████▍     | 17/38 [00:01<00:02,  9.18it/s]
Processing PCDHGB2--PCDHGA10:  45%|████▍     | 17/38 [00:01<00:02,  9.18it/s]
Processing PCDHGB2--PCDHGA10:  47%|████▋     | 18/38 [00:01<00:02,  9.15it/s]
Processing PCDHGB2--PCDHGC5:  47%|████▋     | 18/38 [00:01<00:02,  9.15it/s] 
Processing PCDHGB2--PCDHGC5:  50%|█████     | 19/38 [00:02<00:02,  9.13it/s]
Processing PCDHGB2--PCDHGB6:  50%|█████     | 19/38 [00:02<00:02,  9.13it/s]
Processing PCDHGB2--PCDHGB6:  53%|█████▎    | 20/38 [00:02<00:01,  9.12it/s]
Processing PCDHGB2--PCDHGA12:  53%|█████▎    | 20/38 [00:02<00:01,  9.12it/s]
Processing PCDHGB2--PCDHGA12:  55%|█████▌    | 21/38 [00:02<00:01,  9.11it/s]
Processing PCDHGB2--PCDHGB7:  55%|█████▌    | 21/38 [00:02<00:01,  9.11it/s] 
Processing PCDHGB2--PCDHGB7:  58%|█████▊    | 22/38 [00:02<00:01,  9.11it/s]
Processing PCDHGB2--PCDHGA9:  58%|█████▊    | 22/38 [00:02<00:01,  9.11it/s]
Processing PCDHGB2--PCDHGA9:  61%|██████    | 23/38 [00:02<00:01,  9.11it/s]
Processing TVP23C--CDRT4:  61%|██████    | 23/38 [00:02<00:01,  9.11it/s]   
Processing TVP23C--CDRT4:  63%|██████▎   | 24/38 [00:02<00:01,  9.11it/s]
Processing GSR--NRG1:  63%|██████▎   | 24/38 [00:02<00:01,  9.11it/s]    
Processing GSR--NRG1:  66%|██████▌   | 25/38 [00:02<00:01,  9.11it/s]
Processing GSR--NRG1-IT3:  66%|██████▌   | 25/38 [00:02<00:01,  9.11it/s]
Processing GSR--NRG1-IT3:  68%|██████▊   | 26/38 [00:02<00:01,  9.17it/s]
Processing PCDHA4--PCDHAC1:  68%|██████▊   | 26/38 [00:02<00:01,  9.17it/s]
Processing PCDHA4--PCDHAC1:  71%|███████   | 27/38 [00:02<00:01,  9.22it/s]
Processing PCDHA4--PCDHAC2:  71%|███████   | 27/38 [00:02<00:01,  9.22it/s]
Processing PCDHA4--PCDHAC2:  74%|███████▎  | 28/38 [00:03<00:01,  9.26it/s]
Processing PCDHA4--PCDHA13:  74%|███████▎  | 28/38 [00:03<00:01,  9.26it/s]
Processing PCDHA4--PCDHA13:  76%|███████▋  | 29/38 [00:03<00:00,  9.29it/s]
Processing SEC24B--CDKL2:  76%|███████▋  | 29/38 [00:03<00:00,  9.29it/s]  
Processing SEC24B--CDKL2:  79%|███████▉  | 30/38 [00:03<00:00,  9.30it/s]
Processing PCDHA10--PCDHAC1:  79%|███████▉  | 30/38 [00:03<00:00,  9.30it/s]
Processing PCDHA10--PCDHAC1:  82%|████████▏ | 31/38 [00:03<00:00,  9.31it/s]
Processing PCDHA10--PCDHAC2:  82%|████████▏ | 31/38 [00:03<00:00,  9.31it/s]
Processing PCDHA10--PCDHAC2:  84%|████████▍ | 32/38 [00:03<00:00,  9.32it/s]
Processing PCDHA10--PCDHA13:  84%|████████▍ | 32/38 [00:03<00:00,  9.32it/s]
Processing PCDHA10--PCDHA13:  87%|████████▋ | 33/38 [00:03<00:00,  9.33it/s]
Processing LRP12--ZFPM2:  87%|████████▋ | 33/38 [00:03<00:00,  9.33it/s]    
Processing LRP12--ZFPM2:  89%|████████▉ | 34/38 [00:03<00:00,  9.33it/s]
Processing MLKL--CHSY1:  89%|████████▉ | 34/38 [00:03<00:00,  9.33it/s] 
Processing MLKL--CHSY1:  92%|█████████▏| 35/38 [00:03<00:00,  9.34it/s]
Processing MLKL--SELENOS:  92%|█████████▏| 35/38 [00:03<00:00,  9.34it/s]
Processing MLKL--SELENOS:  95%|█████████▍| 36/38 [00:03<00:00,  9.34it/s]
Processing KLRC4--KLRK1:  95%|█████████▍| 36/38 [00:03<00:00,  9.34it/s] 
Processing KLRC4--KLRK1:  97%|█████████▋| 37/38 [00:04<00:00,  9.27it/s]
Processing MACROD2--NRG1:  97%|█████████▋| 37/38 [00:04<00:00,  9.27it/s]
Processing MACROD2--NRG1: 100%|██████████| 38/38 [00:04<00:00,  9.29it/s]
Processing MACROD2--NRG1: 100%|██████████| 38/38 [00:04<00:00,  9.16it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory