File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/637003c4cb1d218486a3ca20248bc0/.command.log
Size
6.5 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-3377ac-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/e44c1ebbb9250c641f0b65e9b467c4/aih-tih-sc-3377ac-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e543dae6-5fea-4720-bfb6-150bf1ff20d4/82/1bfcba5045fc10a52ca200a4890a9a/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/637003c4cb1d218486a3ca20248bc0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/637003c4cb1d218486a3ca20248bc0/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/ddb9efeec1c36223b0fbbf192bcd6d/aih-tih-sc-3377ac-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
GUCD1--UPB1
starfusion
arriba
RIMKLB--AC007450.1
starfusion
arriba
ERCC1--EXOC3L2
starfusion
NDUFA9--ACSM4
starfusion
arriba
FSIP1--AC013652.1
starfusion
arriba
ELAPOR1--VAV3
starfusion
arriba
DDHD2--ADAM32
starfusion
arriba
PRSS27--TPSB2
starfusion
NAGA--DGCR2
starfusion
arriba
SVIL--KIAA1217
starfusion
arriba
TLK2--AC240565.1
starfusion
STX16--NPEPL1
starfusion
arriba
TMEM134--GAB4
starfusion
WAC--PLPP4
starfusion
TVP23C--CDRT4
arriba
LINC01953--IKZF2
arriba
AC079610.2--IKZF2
arriba
WAC--ZRANB1
arriba
RIMKLB--LINC01252
arriba
WAC--AL355298.1
arriba
WAC--RPL21P16
arriba
NAGA--DGCR11
arriba
AC092807.3--DDAH1
arriba
ERC1--ADAM2
arriba
NEBL--LINC01153
arriba
NEBL--RN7SKP167
arriba
SGSM1--MYCL
arriba
SGSM1--MYCL-AS1
arriba

  0%|          | 0/28 [00:00<?, ?it/s]
Processing GUCD1--UPB1:   0%|          | 0/28 [00:00<?, ?it/s]
Processing GUCD1--UPB1:   4%|▎         | 1/28 [00:00<00:03,  8.79it/s]
Processing RIMKLB--AC007450.1:   4%|▎         | 1/28 [00:00<00:03,  8.79it/s]
Processing RIMKLB--AC007450.1:   7%|▋         | 2/28 [00:00<00:02,  9.14it/s]
Processing ERCC1--EXOC3L2:   7%|▋         | 2/28 [00:00<00:02,  9.14it/s]    
Processing ERCC1--EXOC3L2:  11%|█         | 3/28 [00:00<00:02,  9.27it/s]
Processing NDUFA9--ACSM4:  11%|█         | 3/28 [00:00<00:02,  9.27it/s] 
Processing NDUFA9--ACSM4:  14%|█▍        | 4/28 [00:00<00:02,  9.34it/s]
Processing FSIP1--AC013652.1:  14%|█▍        | 4/28 [00:00<00:02,  9.34it/s]
Processing FSIP1--AC013652.1:  18%|█▊        | 5/28 [00:00<00:02,  9.37it/s]
Processing ELAPOR1--VAV3:  18%|█▊        | 5/28 [00:00<00:02,  9.37it/s]    
Processing ELAPOR1--VAV3:  21%|██▏       | 6/28 [00:00<00:02,  9.40it/s]
Processing DDHD2--ADAM32:  21%|██▏       | 6/28 [00:00<00:02,  9.40it/s]
Processing DDHD2--ADAM32:  25%|██▌       | 7/28 [00:00<00:02,  9.42it/s]
Processing PRSS27--TPSB2:  25%|██▌       | 7/28 [00:00<00:02,  9.42it/s]
Processing PRSS27--TPSB2:  29%|██▊       | 8/28 [00:00<00:02,  9.43it/s]
Processing NAGA--DGCR2:  29%|██▊       | 8/28 [00:00<00:02,  9.43it/s]  
Processing NAGA--DGCR2:  32%|███▏      | 9/28 [00:00<00:02,  9.44it/s]
Processing SVIL--KIAA1217:  32%|███▏      | 9/28 [00:00<00:02,  9.44it/s]
Processing SVIL--KIAA1217:  36%|███▌      | 10/28 [00:01<00:01,  9.45it/s]
Processing TLK2--AC240565.1:  36%|███▌      | 10/28 [00:01<00:01,  9.45it/s]
Processing TLK2--AC240565.1:  39%|███▉      | 11/28 [00:01<00:01,  9.44it/s]
Processing STX16--NPEPL1:  39%|███▉      | 11/28 [00:01<00:01,  9.44it/s]   
Processing STX16--NPEPL1:  43%|████▎     | 12/28 [00:01<00:01,  9.43it/s]
Processing TMEM134--GAB4:  43%|████▎     | 12/28 [00:01<00:01,  9.43it/s]
Processing TMEM134--GAB4:  46%|████▋     | 13/28 [00:01<00:01,  9.43it/s]
Processing WAC--PLPP4:  46%|████▋     | 13/28 [00:01<00:01,  9.43it/s]   
Processing WAC--PLPP4:  50%|█████     | 14/28 [00:01<00:01,  9.41it/s]
Processing TVP23C--CDRT4:  50%|█████     | 14/28 [00:01<00:01,  9.41it/s]
Processing TVP23C--CDRT4:  54%|█████▎    | 15/28 [00:01<00:01,  9.41it/s]
Processing LINC01953--IKZF2:  54%|█████▎    | 15/28 [00:01<00:01,  9.41it/s]
Processing LINC01953--IKZF2:  57%|█████▋    | 16/28 [00:01<00:01,  9.41it/s]
Processing AC079610.2--IKZF2:  57%|█████▋    | 16/28 [00:01<00:01,  9.41it/s]
Processing AC079610.2--IKZF2:  61%|██████    | 17/28 [00:01<00:01,  9.42it/s]
Processing WAC--ZRANB1:  61%|██████    | 17/28 [00:01<00:01,  9.42it/s]      
Processing WAC--ZRANB1:  64%|██████▍   | 18/28 [00:01<00:01,  9.43it/s]
Processing RIMKLB--LINC01252:  64%|██████▍   | 18/28 [00:01<00:01,  9.43it/s]
Processing RIMKLB--LINC01252:  68%|██████▊   | 19/28 [00:02<00:00,  9.44it/s]
Processing WAC--AL355298.1:  68%|██████▊   | 19/28 [00:02<00:00,  9.44it/s]  
Processing WAC--AL355298.1:  71%|███████▏  | 20/28 [00:02<00:00,  9.44it/s]
Processing WAC--RPL21P16:  71%|███████▏  | 20/28 [00:02<00:00,  9.44it/s]  
Processing WAC--RPL21P16:  75%|███████▌  | 21/28 [00:02<00:00,  9.43it/s]
Processing NAGA--DGCR11:  75%|███████▌  | 21/28 [00:02<00:00,  9.43it/s] 
Processing NAGA--DGCR11:  79%|███████▊  | 22/28 [00:02<00:00,  9.44it/s]
Processing AC092807.3--DDAH1:  79%|███████▊  | 22/28 [00:02<00:00,  9.44it/s]
Processing AC092807.3--DDAH1:  82%|████████▏ | 23/28 [00:02<00:00,  9.44it/s]
Processing ERC1--ADAM2:  82%|████████▏ | 23/28 [00:02<00:00,  9.44it/s]      
Processing ERC1--ADAM2:  86%|████████▌ | 24/28 [00:02<00:00,  9.45it/s]
Processing NEBL--LINC01153:  86%|████████▌ | 24/28 [00:02<00:00,  9.45it/s]
Processing NEBL--LINC01153:  89%|████████▉ | 25/28 [00:02<00:00,  9.45it/s]
Processing NEBL--RN7SKP167:  89%|████████▉ | 25/28 [00:02<00:00,  9.45it/s]
Processing NEBL--RN7SKP167:  93%|█████████▎| 26/28 [00:02<00:00,  9.45it/s]
Processing SGSM1--MYCL:  93%|█████████▎| 26/28 [00:02<00:00,  9.45it/s]    
Processing SGSM1--MYCL:  96%|█████████▋| 27/28 [00:02<00:00,  9.46it/s]
Processing SGSM1--MYCL-AS1:  96%|█████████▋| 27/28 [00:02<00:00,  9.46it/s]
Processing SGSM1--MYCL-AS1: 100%|██████████| 28/28 [00:02<00:00,  9.46it/s]
Processing SGSM1--MYCL-AS1: 100%|██████████| 28/28 [00:02<00:00,  9.41it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory