/usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory INFO 2026-06-03 20:01:44 RExecutor Executing R script via command: Rscript /tmp/script1192442926224711103.R ERROR 2026-06-03 20:01:44 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:01:44 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:01:44 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:01:44 ProcessExecutor During startup - Warning messages: ERROR 2026-06-03 20:01:44 ProcessExecutor 1: Setting LC_CTYPE failed, using "C" ERROR 2026-06-03 20:01:44 ProcessExecutor 2: Setting LC_COLLATE failed, using "C" ERROR 2026-06-03 20:01:44 ProcessExecutor 3: Setting LC_TIME failed, using "C" ERROR 2026-06-03 20:01:44 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C" ERROR 2026-06-03 20:01:44 ProcessExecutor 5: Setting LC_MONETARY failed, using "C" ERROR 2026-06-03 20:01:44 ProcessExecutor 6: Setting LC_PAPER failed, using "C" ERROR 2026-06-03 20:01:44 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C" INFO 2026-06-03 20:01:44 ProcessExecutor [1] "Checking if R is installed" ERROR 2026-06-03 20:01:44 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) Jun 03, 2026 8:01:44 PM com.intel.gkl.NativeLibraryLoader load INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so [Wed Jun 03 20:01:44 GMT 2026] CollectInsertSizeMetrics --Histogram_FILE aih-tih-sc-13d441-R1_A23YTGFLT4_1_collectinsertsize.pdf --INPUT aih-tih-sc-13d441-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-13d441-R1_A23YTGFLT4_1_collectinsertsize.txt --DEVIATIONS 10.0 --MINIMUM_PCT 0.05 --METRIC_ACCUMULATION_LEVEL ALL_READS --INCLUDE_DUPLICATES false --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Wed Jun 03 20:01:44 GMT 2026] Executing as ?@nf-57733b61a6d07a0249607122f429fa79-58a71-fbbgn on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0 INFO 2026-06-03 20:01:46 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,388,037 INFO 2026-06-03 20:01:48 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 1s. Last read position: chr1:3,784,031 INFO 2026-06-03 20:01:50 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 1s. Last read position: chr1:8,360,716 INFO 2026-06-03 20:01:51 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:11,054,761 INFO 2026-06-03 20:01:53 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 1s. Last read position: chr1:15,518,325 INFO 2026-06-03 20:01:54 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 1s. Last read position: chr1:17,071,406 INFO 2026-06-03 20:01:56 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:20,661,329 INFO 2026-06-03 20:01:57 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 1s. Last read position: chr1:21,854,926 INFO 2026-06-03 20:01:59 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 1s. Last read position: chr1:23,417,904 INFO 2026-06-03 20:02:01 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:26,472,569 INFO 2026-06-03 20:02:02 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 1s. Last read position: chr1:27,892,152 INFO 2026-06-03 20:02:04 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:31,670,593 INFO 2026-06-03 20:02:06 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:32,771,946 INFO 2026-06-03 20:02:07 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 1s. Last read position: chr1:36,171,511 INFO 2026-06-03 20:02:09 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 1s. Last read position: chr1:39,385,487 INFO 2026-06-03 20:02:11 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:42,189,285 INFO 2026-06-03 20:02:13 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 2s. Last read position: chr1:43,975,113 INFO 2026-06-03 20:02:15 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:46,645,177 INFO 2026-06-03 20:02:17 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:53,050,843 INFO 2026-06-03 20:02:18 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:61,082,755 INFO 2026-06-03 20:02:20 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:70,184,834 INFO 2026-06-03 20:02:22 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:85,582,875 INFO 2026-06-03 20:02:23 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:94,487,557 INFO 2026-06-03 20:02:25 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:109,114,268 INFO 2026-06-03 20:02:27 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:111,238,857 INFO 2026-06-03 20:02:28 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:114,720,587 INFO 2026-06-03 20:02:30 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:119,915,963 INFO 2026-06-03 20:02:32 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:119,963,786 INFO 2026-06-03 20:02:33 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:145,345,584 INFO 2026-06-03 20:02:35 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:146,107,070 INFO 2026-06-03 20:02:36 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:148,123,962 INFO 2026-06-03 20:02:38 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:149,357,539 INFO 2026-06-03 20:02:40 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:150,472,934 INFO 2026-06-03 20:02:41 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:151,158,838 INFO 2026-06-03 20:02:43 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:153,642,349 INFO 2026-06-03 20:02:45 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:154,183,064 INFO 2026-06-03 20:02:46 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:155,062,243 INFO 2026-06-03 20:02:48 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:155,614,185 INFO 2026-06-03 20:02:49 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:156,136,391 INFO 2026-06-03 20:02:51 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:157,041,316 INFO 2026-06-03 20:02:53 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:161,037,664 INFO 2026-06-03 20:02:55 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:165,768,204 INFO 2026-06-03 20:02:57 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 2s. Last read position: chr1:171,557,760 INFO 2026-06-03 20:02:59 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 2s. Last read position: chr1:179,955,130 INFO 2026-06-03 20:03:00 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:184,708,227 INFO 2026-06-03 20:03:02 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:186,373,399 INFO 2026-06-03 20:03:04 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:201,946,117 INFO 2026-06-03 20:03:06 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:203,852,162 INFO 2026-06-03 20:03:07 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:207,757,161 INFO 2026-06-03 20:03:09 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:215,567,658 INFO 2026-06-03 20:03:11 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:224,411,554 INFO 2026-06-03 20:03:13 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:228,140,311 INFO 2026-06-03 20:03:14 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:233,200,217 INFO 2026-06-03 20:03:16 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:236,852,975 INFO 2026-06-03 20:03:18 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:247,424,727 INFO 2026-06-03 20:03:19 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr2:11,287,722 INFO 2026-06-03 20:03:21 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr2:23,562,285 INFO 2026-06-03 20:03:23 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr2:27,059,171 INFO 2026-06-03 20:03:25 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr2:28,793,939 INFO 2026-06-03 20:03:27 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,263 INFO 2026-06-03 20:03:28 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406 INFO 2026-06-03 20:03:30 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr2:36,546,988 INFO 2026-06-03 20:03:32 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr2:43,224,343 INFO 2026-06-03 20:03:33 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr2:47,160,629 INFO 2026-06-03 20:03:35 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr2:54,973,611 INFO 2026-06-03 20:03:38 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 2s. Last read position: chr2:62,146,690 INFO 2026-06-03 20:03:40 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 2s. Last read position: chr2:70,088,334 INFO 2026-06-03 20:03:42 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 2s. Last read position: chr2:74,368,737 INFO 2026-06-03 20:03:44 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 2s. Last read position: chr2:85,616,267 INFO 2026-06-03 20:03:46 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 2s. Last read position: chr2:95,149,484 INFO 2026-06-03 20:03:48 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 2s. Last read position: chr2:97,249,568 INFO 2026-06-03 20:03:50 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 2s. Last read position: chr2:101,698,110 INFO 2026-06-03 20:03:52 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr2:108,766,188 INFO 2026-06-03 20:03:53 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:110,553,010 INFO 2026-06-03 20:03:55 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:118,970,324 INFO 2026-06-03 20:03:57 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:130,656,717 INFO 2026-06-03 20:03:59 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:144,429,985 INFO 2026-06-03 20:04:00 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:159,438,309 INFO 2026-06-03 20:04:02 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:169,233,472 INFO 2026-06-03 20:04:04 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:174,473,057 INFO 2026-06-03 20:04:06 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:181,919,446 INFO 2026-06-03 20:04:07 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:188,996,453 INFO 2026-06-03 20:04:09 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:189,053,426 INFO 2026-06-03 20:04:11 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:197,121,519 INFO 2026-06-03 20:04:13 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:202,556,447 INFO 2026-06-03 20:04:14 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:211,430,963 INFO 2026-06-03 20:04:16 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:215,373,392 INFO 2026-06-03 20:04:18 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:215,391,745 INFO 2026-06-03 20:04:20 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:215,414,909 INFO 2026-06-03 20:04:21 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:216,499,962 INFO 2026-06-03 20:04:23 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:218,277,379 INFO 2026-06-03 20:04:25 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:220,913,599 INFO 2026-06-03 20:04:26 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:231,455,157 INFO 2026-06-03 20:04:27 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:237,336,296 INFO 2026-06-03 20:04:29 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:237,374,789 INFO 2026-06-03 20:04:31 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:240,022,224 INFO 2026-06-03 20:04:33 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr3:3,150,912 INFO 2026-06-03 20:04:34 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr3:9,923,880 INFO 2026-06-03 20:04:36 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr3:13,614,082 INFO 2026-06-03 20:04:38 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr3:23,954,710 INFO 2026-06-03 20:04:40 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr3:33,838,248 INFO 2026-06-03 20:04:41 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr3:40,462,088 INFO 2026-06-03 20:04:43 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr3:45,689,485 INFO 2026-06-03 20:04:45 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr3:47,852,806 INFO 2026-06-03 20:04:47 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr3:49,013,442 INFO 2026-06-03 20:04:48 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr3:49,368,523 INFO 2026-06-03 20:04:50 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 2s. Last read position: chr3:51,393,093 INFO 2026-06-03 20:04:52 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr3:52,518,819 INFO 2026-06-03 20:04:54 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr3:58,078,812 INFO 2026-06-03 20:04:56 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr3:66,380,479 INFO 2026-06-03 20:04:58 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr3:93,893,031 INFO 2026-06-03 20:04:59 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr3:105,552,537 INFO 2026-06-03 20:05:01 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr3:113,721,689 INFO 2026-06-03 20:05:03 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr3:122,708,166 INFO 2026-06-03 20:05:05 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr3:127,617,310 INFO 2026-06-03 20:05:06 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr3:129,828,288 INFO 2026-06-03 20:05:08 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr3:139,369,301 INFO 2026-06-03 20:05:10 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr3:150,410,241 INFO 2026-06-03 20:05:12 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr3:169,131,530 INFO 2026-06-03 20:05:13 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr3:183,270,810 INFO 2026-06-03 20:05:15 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 2s. Last read position: chr3:186,105,682 INFO 2026-06-03 20:05:17 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 2s. Last read position: chr3:189,789,812 INFO 2026-06-03 20:05:19 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:195,878,445 INFO 2026-06-03 20:05:21 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr4:989,869 INFO 2026-06-03 20:05:23 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr4:2,914,976 INFO 2026-06-03 20:05:25 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr4:7,855,500 INFO 2026-06-03 20:05:27 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr4:22,435,392 INFO 2026-06-03 20:05:28 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr4:40,154,195 INFO 2026-06-03 20:05:30 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr4:54,277,405 INFO 2026-06-03 20:05:32 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 2s. Last read position: chr4:70,397,972 INFO 2026-06-03 20:05:34 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr4:76,755,077 INFO 2026-06-03 20:05:36 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr4:83,066,441 INFO 2026-06-03 20:05:37 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr4:88,687,248 INFO 2026-06-03 20:05:40 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 2s. Last read position: chr4:103,085,352 INFO 2026-06-03 20:05:41 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr4:118,815,551 INFO 2026-06-03 20:05:43 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 2s. Last read position: chr4:125,490,780 INFO 2026-06-03 20:05:45 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 2s. Last read position: chr4:143,349,908 INFO 2026-06-03 20:05:47 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr4:152,411,505 INFO 2026-06-03 20:05:49 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr4:168,711,687 INFO 2026-06-03 20:05:50 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr4:186,603,217 INFO 2026-06-03 20:05:52 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr5:9,190,402 INFO 2026-06-03 20:05:54 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr5:14,461,279 INFO 2026-06-03 20:05:56 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr5:32,239,006 INFO 2026-06-03 20:05:58 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr5:39,201,995 INFO 2026-06-03 20:05:59 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr5:54,519,415 INFO 2026-06-03 20:06:01 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr5:65,576,914 INFO 2026-06-03 20:06:02 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr5:70,944,698 INFO 2026-06-03 20:06:04 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr5:75,596,822 INFO 2026-06-03 20:06:05 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr5:82,277,776 INFO 2026-06-03 20:06:07 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr5:96,662,388 INFO 2026-06-03 20:06:09 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr5:113,513,992 INFO 2026-06-03 20:06:10 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr5:131,162,667 INFO 2026-06-03 20:06:12 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr5:134,777,609 INFO 2026-06-03 20:06:14 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr5:138,556,079 INFO 2026-06-03 20:06:15 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr5:140,657,554 INFO 2026-06-03 20:06:17 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr5:141,477,926 INFO 2026-06-03 20:06:19 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr5:148,282,230 INFO 2026-06-03 20:06:20 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr5:150,129,757 INFO 2026-06-03 20:06:21 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr5:150,404,723 INFO 2026-06-03 20:06:23 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr5:150,649,014 INFO 2026-06-03 20:06:25 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr5:154,409,716 INFO 2026-06-03 20:06:27 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr5:170,262,638 INFO 2026-06-03 20:06:29 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr5:172,768,841 INFO 2026-06-03 20:06:31 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr5:177,436,491 INFO 2026-06-03 20:06:32 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr5:179,726,743 INFO 2026-06-03 20:06:34 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr5:180,792,500 INFO 2026-06-03 20:06:36 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr6:5,216,669 INFO 2026-06-03 20:06:38 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr6:7,904,680 INFO 2026-06-03 20:06:39 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr6:19,837,467 INFO 2026-06-03 20:06:41 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr6:29,606,436 INFO 2026-06-03 20:06:43 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr6:30,892,516 INFO 2026-06-03 20:06:44 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr6:31,644,530 INFO 2026-06-03 20:06:46 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr6:31,968,274 INFO 2026-06-03 20:06:48 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr6:32,048,519 INFO 2026-06-03 20:06:49 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr6:32,095,090 INFO 2026-06-03 20:06:51 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr6:32,977,838 INFO 2026-06-03 20:06:53 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr6:33,415,320 INFO 2026-06-03 20:06:55 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr6:36,210,216 INFO 2026-06-03 20:06:56 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr6:42,857,204 INFO 2026-06-03 20:06:58 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr6:44,248,671 INFO 2026-06-03 20:07:00 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr6:56,470,225 INFO 2026-06-03 20:07:02 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr6:63,684,878 INFO 2026-06-03 20:07:03 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr6:75,914,146 INFO 2026-06-03 20:07:05 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr6:89,083,817 INFO 2026-06-03 20:07:07 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr6:108,222,957 INFO 2026-06-03 20:07:09 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr6:113,860,080 INFO 2026-06-03 20:07:10 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr6:128,067,752 INFO 2026-06-03 20:07:12 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr6:135,181,460 INFO 2026-06-03 20:07:14 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr6:139,373,114 INFO 2026-06-03 20:07:16 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr6:148,544,352 INFO 2026-06-03 20:07:17 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr6:151,944,346 INFO 2026-06-03 20:07:19 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr6:158,584,004 INFO 2026-06-03 20:07:21 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 2s. Last read position: chr6:163,535,004 INFO 2026-06-03 20:07:23 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr6:170,318,470 INFO 2026-06-03 20:07:25 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr7:4,759,318 INFO 2026-06-03 20:07:26 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,335 INFO 2026-06-03 20:07:28 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr7:11,035,755 INFO 2026-06-03 20:07:30 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr7:26,864,184 INFO 2026-06-03 20:07:31 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr7:38,752,205 INFO 2026-06-03 20:07:32 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr7:44,112,759 INFO 2026-06-03 20:07:34 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr7:55,146,692 INFO 2026-06-03 20:07:35 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr7:67,286,293 INFO 2026-06-03 20:07:36 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr7:73,570,743 INFO 2026-06-03 20:07:37 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr7:75,196,977 INFO 2026-06-03 20:07:39 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr7:77,025,037 INFO 2026-06-03 20:07:41 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr7:90,596,693 INFO 2026-06-03 20:07:42 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr7:94,394,973 INFO 2026-06-03 20:07:44 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr7:94,424,389 INFO 2026-06-03 20:07:46 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr7:98,899,689 INFO 2026-06-03 20:07:48 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr7:100,029,909 INFO 2026-06-03 20:07:49 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr7:100,684,559 INFO 2026-06-03 20:07:51 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr7:102,568,082 INFO 2026-06-03 20:07:53 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 2s. Last read position: chr7:107,362,404 INFO 2026-06-03 20:07:55 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr7:122,040,925 INFO 2026-06-03 20:07:57 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr7:128,812,873 INFO 2026-06-03 20:07:59 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr7:135,929,906 INFO 2026-06-03 20:08:00 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr7:140,133,623 INFO 2026-06-03 20:08:02 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr7:143,724,449 INFO 2026-06-03 20:08:04 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr7:150,371,795 INFO 2026-06-03 20:08:05 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr7:152,229,866 INFO 2026-06-03 20:08:07 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr8:9,556,072 INFO 2026-06-03 20:08:09 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr8:18,061,380 INFO 2026-06-03 20:08:11 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr8:22,618,480 INFO 2026-06-03 20:08:12 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr8:28,351,605 INFO 2026-06-03 20:08:14 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr8:37,698,619 INFO 2026-06-03 20:08:16 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr8:38,424,686 INFO 2026-06-03 20:08:17 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr8:42,180,671 INFO 2026-06-03 20:08:19 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr8:54,052,740 INFO 2026-06-03 20:08:21 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr8:67,266,100 INFO 2026-06-03 20:08:23 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr8:80,171,451 INFO 2026-06-03 20:08:24 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr8:96,250,972 INFO 2026-06-03 20:08:26 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr8:100,718,202 INFO 2026-06-03 20:08:28 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr8:115,587,550 INFO 2026-06-03 20:08:30 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr8:123,255,672 INFO 2026-06-03 20:08:31 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr8:140,371,079 INFO 2026-06-03 20:08:33 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr8:143,817,760 INFO 2026-06-03 20:08:34 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,402 INFO 2026-06-03 20:08:35 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr8:143,926,835 INFO 2026-06-03 20:08:37 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr8:144,501,223 INFO 2026-06-03 20:08:39 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr9:5,054,696 INFO 2026-06-03 20:08:41 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr9:14,307,114 INFO 2026-06-03 20:08:42 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr9:32,572,921 INFO 2026-06-03 20:08:44 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr9:35,381,155 INFO 2026-06-03 20:08:45 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr9:37,588,778 INFO 2026-06-03 20:08:46 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr9:71,722,441 INFO 2026-06-03 20:08:48 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr9:84,813,555 INFO 2026-06-03 20:08:50 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr9:93,032,792 INFO 2026-06-03 20:08:51 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr9:98,997,011 INFO 2026-06-03 20:08:53 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr9:109,216,927 INFO 2026-06-03 20:08:55 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 2s. Last read position: chr9:114,096,454 INFO 2026-06-03 20:08:57 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr9:121,160,210 INFO 2026-06-03 20:08:58 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr9:123,383,673 INFO 2026-06-03 20:08:59 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr9:127,735,155 INFO 2026-06-03 20:09:01 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr9:128,588,855 INFO 2026-06-03 20:09:03 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr9:130,369,733 INFO 2026-06-03 20:09:05 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr9:131,529,191 INFO 2026-06-03 20:09:06 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr9:134,050,496 INFO 2026-06-03 20:09:08 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 1s. Last read position: chr9:136,474,177 INFO 2026-06-03 20:09:10 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 1s. Last read position: chr9:137,041,113 INFO 2026-06-03 20:09:12 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr10:363,196 INFO 2026-06-03 20:09:13 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 1s. Last read position: chr10:7,802,346 INFO 2026-06-03 20:09:15 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr10:17,233,861 INFO 2026-06-03 20:09:17 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr10:24,620,763 INFO 2026-06-03 20:09:19 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 1s. Last read position: chr10:32,022,152 INFO 2026-06-03 20:09:21 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 1s. Last read position: chr10:37,169,658 INFO 2026-06-03 20:09:22 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 1s. Last read position: chr10:43,556,747 INFO 2026-06-03 20:09:24 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 1s. Last read position: chr10:46,130,819 INFO 2026-06-03 20:09:26 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 1s. Last read position: chr10:59,270,093 INFO 2026-06-03 20:09:28 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 1s. Last read position: chr10:68,967,075 INFO 2026-06-03 20:09:30 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 1s. Last read position: chr10:73,674,941 INFO 2026-06-03 20:09:31 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 1s. Last read position: chr10:77,842,186 INFO 2026-06-03 20:09:33 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 1s. Last read position: chr10:86,923,392 INFO 2026-06-03 20:09:35 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 1s. Last read position: chr10:91,959,083 INFO 2026-06-03 20:09:37 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 1s. Last read position: chr10:96,648,689 INFO 2026-06-03 20:09:38 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 1s. Last read position: chr10:101,611,375 INFO 2026-06-03 20:09:40 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 1s. Last read position: chr10:103,602,405 INFO 2026-06-03 20:09:42 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 1s. Last read position: chr10:113,165,755 INFO 2026-06-03 20:09:43 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 1s. Last read position: chr10:119,835,554 INFO 2026-06-03 20:09:45 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 1s. Last read position: chr10:125,747,551 INFO 2026-06-03 20:09:47 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 1s. Last read position: chr11:294,566 INFO 2026-06-03 20:09:48 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 1s. Last read position: chr11:809,986 INFO 2026-06-03 20:09:50 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 1s. Last read position: chr11:1,243,825 INFO 2026-06-03 20:09:51 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 1s. Last read position: chr11:2,396,681 INFO 2026-06-03 20:09:53 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 1s. Last read position: chr11:6,611,790 INFO 2026-06-03 20:09:55 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 1s. Last read position: chr11:9,414,356 INFO 2026-06-03 20:09:57 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 1s. Last read position: chr11:14,771,964 INFO 2026-06-03 20:09:59 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 1s. Last read position: chr11:32,614,014 INFO 2026-06-03 20:10:00 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr11:43,312,105 INFO 2026-06-03 20:10:02 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 1s. Last read position: chr11:46,795,652 INFO 2026-06-03 20:10:04 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 1s. Last read position: chr11:57,415,044 INFO 2026-06-03 20:10:05 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr11:59,651,580 INFO 2026-06-03 20:10:06 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 1s. Last read position: chr11:61,967,521 INFO 2026-06-03 20:10:08 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr11:62,522,752 INFO 2026-06-03 20:10:10 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr11:62,528,911 INFO 2026-06-03 20:10:11 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr11:62,572,634 INFO 2026-06-03 20:10:13 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr11:63,900,099 INFO 2026-06-03 20:10:15 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr11:64,909,134 INFO 2026-06-03 20:10:16 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr11:65,554,160 INFO 2026-06-03 20:10:18 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr11:66,058,058 INFO 2026-06-03 20:10:20 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr11:67,245,372 INFO 2026-06-03 20:10:22 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr11:68,429,639 INFO 2026-06-03 20:10:24 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr11:72,003,425 INFO 2026-06-03 20:10:26 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr11:72,821,710 INFO 2026-06-03 20:10:27 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr11:76,351,049 INFO 2026-06-03 20:10:29 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr11:86,556,604 INFO 2026-06-03 20:10:31 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr11:102,114,266 INFO 2026-06-03 20:10:33 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr11:111,908,780 INFO 2026-06-03 20:10:34 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr11:117,181,523 INFO 2026-06-03 20:10:36 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr11:118,627,836 INFO 2026-06-03 20:10:37 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr11:120,211,352 INFO 2026-06-03 20:10:38 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr11:126,292,593 INFO 2026-06-03 20:10:40 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr11:134,203,695 INFO 2026-06-03 20:10:42 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr12:4,657,787 INFO 2026-06-03 20:10:44 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr12:6,599,704 INFO 2026-06-03 20:10:46 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr12:7,065,098 INFO 2026-06-03 20:10:47 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr12:9,074,581 INFO 2026-06-03 20:10:49 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr12:12,130,851 INFO 2026-06-03 20:10:51 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr12:15,631,473 INFO 2026-06-03 20:10:52 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr12:29,783,491 INFO 2026-06-03 20:10:53 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr12:46,204,398 INFO 2026-06-03 20:10:54 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr12:49,038,876 INFO 2026-06-03 20:10:55 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr12:50,098,952 INFO 2026-06-03 20:10:57 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr12:52,519,763 INFO 2026-06-03 20:10:58 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr12:53,382,690 INFO 2026-06-03 20:11:00 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr12:54,283,783 INFO 2026-06-03 20:11:01 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr12:55,840,738 INFO 2026-06-03 20:11:03 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr12:56,319,698 INFO 2026-06-03 20:11:05 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr12:57,096,960 INFO 2026-06-03 20:11:06 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr12:57,180,462 INFO 2026-06-03 20:11:08 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr12:57,512,259 INFO 2026-06-03 20:11:10 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr12:64,404,803 INFO 2026-06-03 20:11:12 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr12:72,286,838 INFO 2026-06-03 20:11:13 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr12:91,153,158 INFO 2026-06-03 20:11:15 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr12:98,594,017 INFO 2026-06-03 20:11:17 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr12:105,140,371 INFO 2026-06-03 20:11:18 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr12:109,857,546 INFO 2026-06-03 20:11:20 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr12:112,405,853 INFO 2026-06-03 20:11:21 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr12:118,246,130 INFO 2026-06-03 20:11:23 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr12:121,809,992 INFO 2026-06-03 20:11:24 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr12:123,752,355 INFO 2026-06-03 20:11:26 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr12:131,764,614 INFO 2026-06-03 20:11:28 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr13:19,633,775 INFO 2026-06-03 20:11:29 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr13:26,214,123 INFO 2026-06-03 20:11:31 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr13:37,029,773 INFO 2026-06-03 20:11:33 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr13:44,575,999 INFO 2026-06-03 20:11:34 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr13:51,584,677 INFO 2026-06-03 20:11:36 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr13:79,365,683 INFO 2026-06-03 20:11:38 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr13:102,676,357 INFO 2026-06-03 20:11:39 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr13:112,823,375 INFO 2026-06-03 20:11:41 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr14:21,018,004 INFO 2026-06-03 20:11:43 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr14:22,876,134 INFO 2026-06-03 20:11:45 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr14:24,160,331 INFO 2026-06-03 20:11:46 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr14:31,173,274 INFO 2026-06-03 20:11:48 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr14:44,963,726 INFO 2026-06-03 20:11:50 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr14:52,671,855 INFO 2026-06-03 20:11:52 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr14:61,746,950 INFO 2026-06-03 20:11:53 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr14:67,813,986 INFO 2026-06-03 20:11:54 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr14:71,105,335 INFO 2026-06-03 20:11:55 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr14:74,508,906 INFO 2026-06-03 20:11:56 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr14:75,595,824 INFO 2026-06-03 20:11:58 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr14:90,902,844 INFO 2026-06-03 20:12:00 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr14:95,090,467 INFO 2026-06-03 20:12:02 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr14:101,809,894 INFO 2026-06-03 20:12:03 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr14:103,559,850 INFO 2026-06-03 20:12:05 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr14:105,152,161 INFO 2026-06-03 20:12:07 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr14:105,588,284 INFO 2026-06-03 20:12:08 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,412 INFO 2026-06-03 20:12:09 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,809 INFO 2026-06-03 20:12:10 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr15:22,939,229 INFO 2026-06-03 20:12:11 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr15:32,392,693 INFO 2026-06-03 20:12:12 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr15:39,588,578 INFO 2026-06-03 20:12:13 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr15:41,799,890 INFO 2026-06-03 20:12:15 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr15:43,527,944 INFO 2026-06-03 20:12:16 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr15:48,432,895 INFO 2026-06-03 20:12:17 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr15:52,609,254 INFO 2026-06-03 20:12:18 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr15:60,347,580 INFO 2026-06-03 20:12:19 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr15:63,775,472 INFO 2026-06-03 20:12:21 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr15:66,500,112 INFO 2026-06-03 20:12:22 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr15:71,898,515 INFO 2026-06-03 20:12:24 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr15:74,133,478 INFO 2026-06-03 20:12:26 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr15:77,046,867 INFO 2026-06-03 20:12:27 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr15:82,536,762 INFO 2026-06-03 20:12:29 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr15:85,723,082 INFO 2026-06-03 20:12:31 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr15:90,266,411 INFO 2026-06-03 20:12:32 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr15:98,913,203 INFO 2026-06-03 20:12:34 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr16:263,754 INFO 2026-06-03 20:12:36 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr16:1,361,782 INFO 2026-06-03 20:12:38 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr16:2,088,466 INFO 2026-06-03 20:12:39 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr16:2,761,943 INFO 2026-06-03 20:12:41 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr16:3,216,120 INFO 2026-06-03 20:12:43 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr16:4,832,899 INFO 2026-06-03 20:12:44 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr16:14,218,843 INFO 2026-06-03 20:12:46 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr16:15,016,136 INFO 2026-06-03 20:12:47 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr16:16,318,526 INFO 2026-06-03 20:12:49 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr16:18,361,235 INFO 2026-06-03 20:12:51 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr16:20,792,245 INFO 2026-06-03 20:12:52 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr16:21,641,467 INFO 2026-06-03 20:12:54 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr16:22,465,691 INFO 2026-06-03 20:12:56 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr16:23,072,181 INFO 2026-06-03 20:12:57 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr16:28,486,603 INFO 2026-06-03 20:12:59 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr16:29,390,088 INFO 2026-06-03 20:13:00 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr16:29,895,757 INFO 2026-06-03 20:13:02 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr16:30,245,458 INFO 2026-06-03 20:13:04 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr16:30,965,694 INFO 2026-06-03 20:13:06 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr16:31,493,654 INFO 2026-06-03 20:13:07 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr16:54,285,328 INFO 2026-06-03 20:13:09 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr16:56,939,964 INFO 2026-06-03 20:13:10 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr16:67,167,120 INFO 2026-06-03 20:13:12 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr16:68,829,702 INFO 2026-06-03 20:13:13 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr16:71,569,887 INFO 2026-06-03 20:13:15 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr16:77,193,659 INFO 2026-06-03 20:13:17 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr16:87,334,230 INFO 2026-06-03 20:13:18 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr16:89,281,269 INFO 2026-06-03 20:13:20 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr17:1,279,963 INFO 2026-06-03 20:13:22 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr17:1,727,099 INFO 2026-06-03 20:13:23 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr17:3,941,367 INFO 2026-06-03 20:13:25 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr17:5,022,118 INFO 2026-06-03 20:13:27 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr17:7,312,154 INFO 2026-06-03 20:13:28 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr17:7,575,088 INFO 2026-06-03 20:13:30 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr17:8,147,343 INFO 2026-06-03 20:13:31 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr17:15,547,070 INFO 2026-06-03 20:13:33 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr17:17,814,834 INFO 2026-06-03 20:13:35 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr17:20,205,707 INFO 2026-06-03 20:13:36 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr17:28,722,824 INFO 2026-06-03 20:13:38 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr17:31,327,648 INFO 2026-06-03 20:13:40 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr17:35,844,305 INFO 2026-06-03 20:13:41 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr17:38,562,289 INFO 2026-06-03 20:13:43 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr17:39,530,962 INFO 2026-06-03 20:13:44 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr17:40,026,181 INFO 2026-06-03 20:13:45 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr17:41,621,674 INFO 2026-06-03 20:13:46 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr17:42,405,373 INFO 2026-06-03 20:13:47 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr17:43,719,625 INFO 2026-06-03 20:13:49 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr17:45,515,162 INFO 2026-06-03 20:13:50 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr17:47,916,846 INFO 2026-06-03 20:13:51 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,497 INFO 2026-06-03 20:13:52 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,755 INFO 2026-06-03 20:13:53 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,882 INFO 2026-06-03 20:13:54 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,765 INFO 2026-06-03 20:13:55 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,478 INFO 2026-06-03 20:13:56 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,086 INFO 2026-06-03 20:13:58 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,803 INFO 2026-06-03 20:13:59 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,835 INFO 2026-06-03 20:14:00 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,145 INFO 2026-06-03 20:14:01 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,799 INFO 2026-06-03 20:14:03 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,937 INFO 2026-06-03 20:14:04 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,503 INFO 2026-06-03 20:14:05 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,753 INFO 2026-06-03 20:14:06 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,279 INFO 2026-06-03 20:14:07 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr17:50,201,462 INFO 2026-06-03 20:14:08 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr17:57,683,636 INFO 2026-06-03 20:14:10 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr17:59,690,652 INFO 2026-06-03 20:14:11 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr17:63,774,325 INFO 2026-06-03 20:14:12 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr17:67,107,647 INFO 2026-06-03 20:14:13 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr17:68,940,849 INFO 2026-06-03 20:14:14 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr17:75,240,026 INFO 2026-06-03 20:14:15 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr17:75,847,495 INFO 2026-06-03 20:14:16 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr17:78,113,558 INFO 2026-06-03 20:14:18 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr17:80,290,657 INFO 2026-06-03 20:14:19 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr17:81,682,131 INFO 2026-06-03 20:14:20 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr17:82,082,618 INFO 2026-06-03 20:14:21 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr17:82,253,124 INFO 2026-06-03 20:14:22 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr18:7,080,017 INFO 2026-06-03 20:14:23 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr18:21,044,173 INFO 2026-06-03 20:14:24 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr18:31,545,971 INFO 2026-06-03 20:14:26 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr18:46,086,407 INFO 2026-06-03 20:14:27 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr18:57,027,093 INFO 2026-06-03 20:14:28 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr18:71,173,439 INFO 2026-06-03 20:14:29 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr19:797,473 INFO 2026-06-03 20:14:30 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr19:1,207,168 INFO 2026-06-03 20:14:31 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr19:1,912,854 INFO 2026-06-03 20:14:32 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr19:3,381,912 INFO 2026-06-03 20:14:33 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr19:4,511,323 INFO 2026-06-03 20:14:34 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr19:5,244,347 INFO 2026-06-03 20:14:36 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr19:6,694,569 INFO 2026-06-03 20:14:37 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr19:7,872,268 INFO 2026-06-03 20:14:38 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr19:10,118,907 INFO 2026-06-03 20:14:39 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr19:11,060,172 INFO 2026-06-03 20:14:40 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr19:12,676,118 INFO 2026-06-03 20:14:41 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr19:13,926,859 INFO 2026-06-03 20:14:42 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr19:15,179,052 INFO 2026-06-03 20:14:43 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr19:15,423,135 INFO 2026-06-03 20:14:44 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr19:17,240,689 INFO 2026-06-03 20:14:45 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr19:18,436,203 INFO 2026-06-03 20:14:47 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr19:19,634,096 INFO 2026-06-03 20:14:48 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr19:34,377,863 INFO 2026-06-03 20:14:49 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr19:35,755,591 INFO 2026-06-03 20:14:50 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr19:38,624,099 INFO 2026-06-03 20:14:51 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr19:39,433,284 INFO 2026-06-03 20:14:52 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr19:40,566,219 INFO 2026-06-03 20:14:53 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr19:41,902,541 INFO 2026-06-03 20:14:54 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr19:42,293,932 INFO 2026-06-03 20:14:55 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr19:44,882,256 INFO 2026-06-03 20:14:56 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr19:45,771,620 INFO 2026-06-03 20:14:57 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr19:47,409,170 INFO 2026-06-03 20:14:59 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr19:48,865,583 INFO 2026-06-03 20:15:00 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr19:49,497,549 INFO 2026-06-03 20:15:01 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr19:49,870,011 INFO 2026-06-03 20:15:02 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr19:52,801,303 INFO 2026-06-03 20:15:03 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr19:54,458,526 INFO 2026-06-03 20:15:04 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr19:55,677,472 INFO 2026-06-03 20:15:05 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr19:58,090,084 INFO 2026-06-03 20:15:06 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr20:2,484,533 INFO 2026-06-03 20:15:08 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr20:4,873,963 INFO 2026-06-03 20:15:09 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr20:18,056,750 INFO 2026-06-03 20:15:10 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr20:32,133,012 INFO 2026-06-03 20:15:11 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr20:35,303,959 INFO 2026-06-03 20:15:12 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr20:37,522,695 INFO 2026-06-03 20:15:13 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr20:44,006,704 INFO 2026-06-03 20:15:14 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr20:46,011,726 INFO 2026-06-03 20:15:15 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr20:50,581,049 INFO 2026-06-03 20:15:16 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr20:58,895,614 INFO 2026-06-03 20:15:18 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr20:62,829,624 INFO 2026-06-03 20:15:19 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr21:5,036,487 INFO 2026-06-03 20:15:20 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr21:8,390,881 INFO 2026-06-03 20:15:21 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,650 INFO 2026-06-03 20:15:22 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr21:29,326,630 INFO 2026-06-03 20:15:23 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr21:34,669,501 INFO 2026-06-03 20:15:24 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr21:39,258,503 INFO 2026-06-03 20:15:25 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr21:44,331,902 INFO 2026-06-03 20:15:26 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr21:45,992,051 INFO 2026-06-03 20:15:27 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr21:46,122,925 INFO 2026-06-03 20:15:28 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr22:19,038,888 INFO 2026-06-03 20:15:30 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr22:21,642,863 INFO 2026-06-03 20:15:31 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr22:24,038,404 INFO 2026-06-03 20:15:32 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr22:28,795,331 INFO 2026-06-03 20:15:33 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr22:29,296,300 INFO 2026-06-03 20:15:34 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr22:31,104,325 INFO 2026-06-03 20:15:35 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr22:36,285,209 INFO 2026-06-03 20:15:36 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr22:37,754,875 INFO 2026-06-03 20:15:37 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr22:38,736,328 INFO 2026-06-03 20:15:38 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr22:40,857,136 INFO 2026-06-03 20:15:39 SinglePassSamProgram Processed 532,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr22:42,505,060 INFO 2026-06-03 20:15:40 SinglePassSamProgram Processed 533,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr22:46,287,134 INFO 2026-06-03 20:15:42 SinglePassSamProgram Processed 534,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr22:50,278,594 INFO 2026-06-03 20:15:43 SinglePassSamProgram Processed 535,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chrX:314,943 INFO 2026-06-03 20:15:44 SinglePassSamProgram Processed 536,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chrX:10,109,862 INFO 2026-06-03 20:15:45 SinglePassSamProgram Processed 537,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chrX:24,068,051 INFO 2026-06-03 20:15:46 SinglePassSamProgram Processed 538,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chrX:41,347,398 INFO 2026-06-03 20:15:47 SinglePassSamProgram Processed 539,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chrX:48,599,707 INFO 2026-06-03 20:15:48 SinglePassSamProgram Processed 540,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chrX:53,210,758 INFO 2026-06-03 20:15:49 SinglePassSamProgram Processed 541,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chrX:54,815,435 INFO 2026-06-03 20:15:50 SinglePassSamProgram Processed 542,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chrX:71,140,707 INFO 2026-06-03 20:15:51 SinglePassSamProgram Processed 543,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chrX:76,426,617 INFO 2026-06-03 20:15:52 SinglePassSamProgram Processed 544,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chrX:101,398,863 INFO 2026-06-03 20:15:54 SinglePassSamProgram Processed 545,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chrX:111,246,734 INFO 2026-06-03 20:15:55 SinglePassSamProgram Processed 546,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chrX:130,013,439 INFO 2026-06-03 20:15:56 SinglePassSamProgram Processed 547,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chrX:152,827,769 INFO 2026-06-03 20:15:57 SinglePassSamProgram Processed 548,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chrX:154,357,501 INFO 2026-06-03 20:15:58 SinglePassSamProgram Processed 549,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chrX:154,992,969 INFO 2026-06-03 20:15:59 SinglePassSamProgram Processed 550,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: GL000220.1:157,848 INFO 2026-06-03 20:16:00 SinglePassSamProgram Processed 551,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,601 INFO 2026-06-03 20:16:01 RExecutor Executing R script via command: Rscript /tmp/script2773874695916019436.R /tmp/nxf.XXXXRONLqp/aih-tih-sc-13d441-R1_A23YTGFLT4_1_collectinsertsize.txt /tmp/nxf.XXXXRONLqp/aih-tih-sc-13d441-R1_A23YTGFLT4_1_collectinsertsize.pdf aih-tih-sc-13d441-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam ERROR 2026-06-03 20:16:01 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:16:01 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:16:01 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:16:01 ProcessExecutor During startup - Warning messages: ERROR 2026-06-03 20:16:01 ProcessExecutor 1: Setting LC_CTYPE failed, using "C" ERROR 2026-06-03 20:16:01 ProcessExecutor 2: Setting LC_COLLATE failed, using "C" ERROR 2026-06-03 20:16:01 ProcessExecutor 3: Setting LC_TIME failed, using "C" ERROR 2026-06-03 20:16:01 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C" ERROR 2026-06-03 20:16:01 ProcessExecutor 5: Setting LC_MONETARY failed, using "C" ERROR 2026-06-03 20:16:01 ProcessExecutor 6: Setting LC_PAPER failed, using "C" ERROR 2026-06-03 20:16:01 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C" INFO 2026-06-03 20:16:01 ProcessExecutor null device INFO 2026-06-03 20:16:01 ProcessExecutor 1 ERROR 2026-06-03 20:16:01 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) [Wed Jun 03 20:16:01 GMT 2026] picard.analysis.CollectInsertSizeMetrics done. Elapsed time: 14.29 minutes. Runtime.totalMemory()=360710144