#!/bin/bash -euo pipefail
picard \
    -Xmx3276M \
    CollectInsertSizeMetrics \
     \
    --INPUT aih-tih-sc-13d441-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam \
    --OUTPUT aih-tih-sc-13d441-R1_A23YTGFLT4_1_collectinsertsize.txt \
    --Histogram_FILE aih-tih-sc-13d441-R1_A23YTGFLT4_1_collectinsertsize.pdf

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:PICARD_COLLECTINSERTSIZEMETRICS":
    picard: $(picard CollectInsertSizeMetrics --version 2>&1 | grep -o 'Version:.*' | cut -f2- -d:)
END_VERSIONS