/usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory INFO 2026-06-03 20:31:47 RExecutor Executing R script via command: Rscript /tmp/script18037424646387581267.R ERROR 2026-06-03 20:31:47 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:31:47 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:31:47 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:31:47 ProcessExecutor During startup - Warning messages: ERROR 2026-06-03 20:31:47 ProcessExecutor 1: Setting LC_CTYPE failed, using "C" ERROR 2026-06-03 20:31:47 ProcessExecutor 2: Setting LC_COLLATE failed, using "C" ERROR 2026-06-03 20:31:47 ProcessExecutor 3: Setting LC_TIME failed, using "C" ERROR 2026-06-03 20:31:47 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C" ERROR 2026-06-03 20:31:47 ProcessExecutor 5: Setting LC_MONETARY failed, using "C" ERROR 2026-06-03 20:31:47 ProcessExecutor 6: Setting LC_PAPER failed, using "C" ERROR 2026-06-03 20:31:47 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C" INFO 2026-06-03 20:31:47 ProcessExecutor [1] "Checking if R is installed" ERROR 2026-06-03 20:31:47 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) Jun 03, 2026 8:31:47 PM com.intel.gkl.NativeLibraryLoader load INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so [Wed Jun 03 20:31:47 GMT 2026] CollectInsertSizeMetrics --Histogram_FILE aih-tih-sc-28eb14-R1_A23YTGFLT4_1_collectinsertsize.pdf --INPUT aih-tih-sc-28eb14-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-28eb14-R1_A23YTGFLT4_1_collectinsertsize.txt --DEVIATIONS 10.0 --MINIMUM_PCT 0.05 --METRIC_ACCUMULATION_LEVEL ALL_READS --INCLUDE_DUPLICATES false --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Wed Jun 03 20:31:47 GMT 2026] Executing as ?@nf-cfae9964f50ada835548c080721f43c7-46ca0-clrd2 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0 INFO 2026-06-03 20:31:48 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:01s. Time for last 1,000,000: 1s. Last read position: chr1:1,435,730 INFO 2026-06-03 20:31:49 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:01s. Time for last 1,000,000: 0s. Last read position: chr1:6,186,680 INFO 2026-06-03 20:31:50 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 0s. Last read position: chr1:10,638,624 INFO 2026-06-03 20:31:50 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 0s. Last read position: chr1:15,725,432 INFO 2026-06-03 20:31:51 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 0s. Last read position: chr1:19,156,780 INFO 2026-06-03 20:31:52 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 0s. Last read position: chr1:21,884,577 INFO 2026-06-03 20:31:53 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 0s. Last read position: chr1:25,352,959 INFO 2026-06-03 20:31:54 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 0s. Last read position: chr1:27,668,225 INFO 2026-06-03 20:31:54 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 0s. Last read position: chr1:31,919,012 INFO 2026-06-03 20:31:55 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 0s. Last read position: chr1:35,358,925 INFO 2026-06-03 20:31:56 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 0s. Last read position: chr1:39,283,288 INFO 2026-06-03 20:31:57 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 0s. Last read position: chr1:42,195,019 INFO 2026-06-03 20:31:57 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 0s. Last read position: chr1:44,221,622 INFO 2026-06-03 20:31:58 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 0s. Last read position: chr1:51,403,459 INFO 2026-06-03 20:31:59 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 0s. Last read position: chr1:62,513,449 INFO 2026-06-03 20:32:00 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 0s. Last read position: chr1:87,103,415 INFO 2026-06-03 20:32:01 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 0s. Last read position: chr1:107,617,565 INFO 2026-06-03 20:32:01 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 0s. Last read position: chr1:109,253,356 INFO 2026-06-03 20:32:02 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 0s. Last read position: chr1:110,043,832 INFO 2026-06-03 20:32:03 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 0s. Last read position: chr1:114,737,976 INFO 2026-06-03 20:32:04 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 0s. Last read position: chr1:120,833,687 INFO 2026-06-03 20:32:04 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 0s. Last read position: chr1:146,128,187 INFO 2026-06-03 20:32:05 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 0s. Last read position: chr1:148,540,945 INFO 2026-06-03 20:32:06 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 0s. Last read position: chr1:149,784,058 INFO 2026-06-03 20:32:07 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 0s. Last read position: chr1:150,144,806 INFO 2026-06-03 20:32:07 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 0s. Last read position: chr1:150,816,309 INFO 2026-06-03 20:32:08 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 0s. Last read position: chr1:151,342,058 INFO 2026-06-03 20:32:09 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 0s. Last read position: chr1:152,307,651 INFO 2026-06-03 20:32:10 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 0s. Last read position: chr1:153,973,010 INFO 2026-06-03 20:32:10 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 0s. Last read position: chr1:154,173,094 INFO 2026-06-03 20:32:11 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 0s. Last read position: chr1:154,590,196 INFO 2026-06-03 20:32:12 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 0s. Last read position: chr1:155,060,774 INFO 2026-06-03 20:32:13 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 0s. Last read position: chr1:155,188,393 INFO 2026-06-03 20:32:13 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 0s. Last read position: chr1:155,192,300 INFO 2026-06-03 20:32:14 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 0s. Last read position: chr1:155,659,913 INFO 2026-06-03 20:32:15 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 0s. Last read position: chr1:156,130,618 INFO 2026-06-03 20:32:16 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 0s. Last read position: chr1:156,261,360 INFO 2026-06-03 20:32:16 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 0s. Last read position: chr1:156,701,019 INFO 2026-06-03 20:32:17 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 0s. Last read position: chr1:160,240,219 INFO 2026-06-03 20:32:18 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 0s. Last read position: chr1:161,171,846 INFO 2026-06-03 20:32:19 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 0s. Last read position: chr1:165,651,012 INFO 2026-06-03 20:32:20 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 0s. Last read position: chr1:171,541,562 INFO 2026-06-03 20:32:20 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 0s. Last read position: chr1:175,160,849 INFO 2026-06-03 20:32:21 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 0s. Last read position: chr1:182,384,642 INFO 2026-06-03 20:32:22 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 0s. Last read position: chr1:185,151,876 INFO 2026-06-03 20:32:23 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 0s. Last read position: chr1:193,029,581 INFO 2026-06-03 20:32:23 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 0s. Last read position: chr1:201,900,631 INFO 2026-06-03 20:32:24 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 0s. Last read position: chr1:203,165,884 INFO 2026-06-03 20:32:25 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 0s. Last read position: chr1:204,411,289 INFO 2026-06-03 20:32:26 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 0s. Last read position: chr1:207,757,075 INFO 2026-06-03 20:32:26 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 0s. Last read position: chr1:213,242,231 INFO 2026-06-03 20:32:27 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 0s. Last read position: chr1:222,687,609 INFO 2026-06-03 20:32:28 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 0s. Last read position: chr1:225,844,523 INFO 2026-06-03 20:32:29 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 0s. Last read position: chr1:228,097,604 INFO 2026-06-03 20:32:29 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 0s. Last read position: chr1:229,299,037 INFO 2026-06-03 20:32:30 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 0s. Last read position: chr1:234,608,910 INFO 2026-06-03 20:32:31 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 0s. Last read position: chr1:244,054,795 INFO 2026-06-03 20:32:32 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 0s. Last read position: chr1:248,853,937 INFO 2026-06-03 20:32:32 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 0s. Last read position: chr2:9,875,962 INFO 2026-06-03 20:32:33 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 0s. Last read position: chr2:19,936,252 INFO 2026-06-03 20:32:34 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 0s. Last read position: chr2:25,153,746 INFO 2026-06-03 20:32:35 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 0s. Last read position: chr2:27,241,958 INFO 2026-06-03 20:32:36 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 0s. Last read position: chr2:30,910,899 INFO 2026-06-03 20:32:36 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 0s. Last read position: chr2:32,916,261 INFO 2026-06-03 20:32:37 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 0s. Last read position: chr2:32,916,264 INFO 2026-06-03 20:32:38 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 0s. Last read position: chr2:32,916,406 INFO 2026-06-03 20:32:39 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 0s. Last read position: chr2:38,564,226 INFO 2026-06-03 20:32:39 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 0s. Last read position: chr2:43,947,261 INFO 2026-06-03 20:32:40 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 0s. Last read position: chr2:53,890,148 INFO 2026-06-03 20:32:41 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 0s. Last read position: chr2:61,228,656 INFO 2026-06-03 20:32:42 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 0s. Last read position: chr2:68,180,999 INFO 2026-06-03 20:32:42 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 0s. Last read position: chr2:71,139,807 INFO 2026-06-03 20:32:43 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 0s. Last read position: chr2:74,369,208 INFO 2026-06-03 20:32:44 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 0s. Last read position: chr2:85,344,662 INFO 2026-06-03 20:32:45 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 0s. Last read position: chr2:87,049,697 INFO 2026-06-03 20:32:45 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 0s. Last read position: chr2:96,299,404 INFO 2026-06-03 20:32:46 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 0s. Last read position: chr2:99,382,200 INFO 2026-06-03 20:32:47 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 0s. Last read position: chr2:106,436,145 INFO 2026-06-03 20:32:48 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 0s. Last read position: chr2:109,546,179 INFO 2026-06-03 20:32:49 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 0s. Last read position: chr2:113,133,152 INFO 2026-06-03 20:32:49 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 0s. Last read position: chr2:127,955,131 INFO 2026-06-03 20:32:50 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 0s. Last read position: chr2:131,530,806 INFO 2026-06-03 20:32:51 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 0s. Last read position: chr2:142,130,660 INFO 2026-06-03 20:32:52 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 0s. Last read position: chr2:161,204,748 INFO 2026-06-03 20:32:52 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 0s. Last read position: chr2:172,564,659 INFO 2026-06-03 20:32:53 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 0s. Last read position: chr2:178,583,767 INFO 2026-06-03 20:32:54 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 0s. Last read position: chr2:189,666,299 INFO 2026-06-03 20:32:55 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 0s. Last read position: chr2:200,817,135 INFO 2026-06-03 20:32:55 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 0s. Last read position: chr2:206,767,228 INFO 2026-06-03 20:32:56 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 0s. Last read position: chr2:215,365,403 INFO 2026-06-03 20:32:57 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 0s. Last read position: chr2:215,386,854 INFO 2026-06-03 20:32:58 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 0s. Last read position: chr2:215,425,231 INFO 2026-06-03 20:32:59 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 0s. Last read position: chr2:218,277,397 INFO 2026-06-03 20:32:59 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 0s. Last read position: chr2:219,482,797 INFO 2026-06-03 20:33:00 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 0s. Last read position: chr2:226,795,946 INFO 2026-06-03 20:33:01 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 0s. Last read position: chr2:229,840,850 INFO 2026-06-03 20:33:02 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 0s. Last read position: chr2:232,662,831 INFO 2026-06-03 20:33:02 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 0s. Last read position: chr2:237,518,584 INFO 2026-06-03 20:33:03 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 0s. Last read position: chr2:239,961,111 INFO 2026-06-03 20:33:04 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 0s. Last read position: chr2:241,255,182 INFO 2026-06-03 20:33:05 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 0s. Last read position: chr3:4,983,398 INFO 2026-06-03 20:33:05 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 0s. Last read position: chr3:9,949,845 INFO 2026-06-03 20:33:06 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 0s. Last read position: chr3:13,481,370 INFO 2026-06-03 20:33:07 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 0s. Last read position: chr3:27,394,740 INFO 2026-06-03 20:33:08 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 0s. Last read position: chr3:37,326,147 INFO 2026-06-03 20:33:08 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 0s. Last read position: chr3:41,835,844 INFO 2026-06-03 20:33:09 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 0s. Last read position: chr3:46,989,333 INFO 2026-06-03 20:33:10 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 0s. Last read position: chr3:47,610,073 INFO 2026-06-03 20:33:11 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 0s. Last read position: chr3:48,424,409 INFO 2026-06-03 20:33:12 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 0s. Last read position: chr3:49,013,700 INFO 2026-06-03 20:33:12 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 0s. Last read position: chr3:49,129,280 INFO 2026-06-03 20:33:13 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 0s. Last read position: chr3:49,719,344 INFO 2026-06-03 20:33:14 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 0s. Last read position: chr3:50,320,036 INFO 2026-06-03 20:33:15 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 0s. Last read position: chr3:52,331,270 INFO 2026-06-03 20:33:15 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 0s. Last read position: chr3:56,616,024 INFO 2026-06-03 20:33:16 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 0s. Last read position: chr3:58,124,453 INFO 2026-06-03 20:33:17 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 0s. Last read position: chr3:64,023,333 INFO 2026-06-03 20:33:18 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 0s. Last read position: chr3:99,848,754 INFO 2026-06-03 20:33:19 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 0s. Last read position: chr3:108,606,184 INFO 2026-06-03 20:33:19 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 0s. Last read position: chr3:121,695,590 INFO 2026-06-03 20:33:20 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 0s. Last read position: chr3:126,419,049 INFO 2026-06-03 20:33:21 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 0s. Last read position: chr3:129,249,616 INFO 2026-06-03 20:33:22 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 0s. Last read position: chr3:132,525,725 INFO 2026-06-03 20:33:22 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 0s. Last read position: chr3:139,935,439 INFO 2026-06-03 20:33:23 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 0s. Last read position: chr3:149,032,226 INFO 2026-06-03 20:33:24 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 0s. Last read position: chr3:160,402,004 INFO 2026-06-03 20:33:25 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 0s. Last read position: chr3:179,614,970 INFO 2026-06-03 20:33:25 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 0s. Last read position: chr3:184,317,448 INFO 2026-06-03 20:33:26 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 0s. Last read position: chr3:187,733,635 INFO 2026-06-03 20:33:27 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 0s. Last read position: chr3:195,867,935 INFO 2026-06-03 20:33:28 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 0s. Last read position: chr4:672,476 INFO 2026-06-03 20:33:29 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 0s. Last read position: chr4:1,711,947 INFO 2026-06-03 20:33:29 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 0s. Last read position: chr4:2,250,574 INFO 2026-06-03 20:33:30 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 0s. Last read position: chr4:3,493,132 INFO 2026-06-03 20:33:31 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 0s. Last read position: chr4:7,043,581 INFO 2026-06-03 20:33:32 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 0s. Last read position: chr4:15,640,854 INFO 2026-06-03 20:33:32 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 0s. Last read position: chr4:39,869,426 INFO 2026-06-03 20:33:33 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 0s. Last read position: chr4:54,295,155 INFO 2026-06-03 20:33:34 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 0s. Last read position: chr4:68,337,695 INFO 2026-06-03 20:33:35 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 0s. Last read position: chr4:77,020,510 INFO 2026-06-03 20:33:35 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 0s. Last read position: chr4:86,016,722 INFO 2026-06-03 20:33:36 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 0s. Last read position: chr4:95,335,492 INFO 2026-06-03 20:33:37 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 0s. Last read position: chr4:105,940,521 INFO 2026-06-03 20:33:38 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 0s. Last read position: chr4:122,333,652 INFO 2026-06-03 20:33:39 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 0s. Last read position: chr4:140,624,129 INFO 2026-06-03 20:33:39 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 0s. Last read position: chr4:145,542,648 INFO 2026-06-03 20:33:40 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 0s. Last read position: chr4:153,788,398 INFO 2026-06-03 20:33:41 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 0s. Last read position: chr4:174,508,777 INFO 2026-06-03 20:33:42 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 0s. Last read position: chr5:1,814,354 INFO 2026-06-03 20:33:42 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 0s. Last read position: chr5:14,479,992 INFO 2026-06-03 20:33:43 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 0s. Last read position: chr5:35,065,694 INFO 2026-06-03 20:33:44 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 0s. Last read position: chr5:43,609,259 INFO 2026-06-03 20:33:45 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 0s. Last read position: chr5:56,885,930 INFO 2026-06-03 20:33:45 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 0s. Last read position: chr5:69,419,941 INFO 2026-06-03 20:33:46 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 0s. Last read position: chr5:73,498,479 INFO 2026-06-03 20:33:47 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 0s. Last read position: chr5:80,654,688 INFO 2026-06-03 20:33:48 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 0s. Last read position: chr5:96,770,585 INFO 2026-06-03 20:33:49 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 0s. Last read position: chr5:116,291,519 INFO 2026-06-03 20:33:49 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 0s. Last read position: chr5:132,761,478 INFO 2026-06-03 20:33:50 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 0s. Last read position: chr5:136,177,460 INFO 2026-06-03 20:33:51 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 0s. Last read position: chr5:138,781,954 INFO 2026-06-03 20:33:52 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 0s. Last read position: chr5:139,680,621 INFO 2026-06-03 20:33:52 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 0s. Last read position: chr5:141,096,396 INFO 2026-06-03 20:33:53 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 0s. Last read position: chr5:141,863,635 INFO 2026-06-03 20:33:54 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 0s. Last read position: chr5:149,505,510 INFO 2026-06-03 20:33:55 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 0s. Last read position: chr5:150,446,801 INFO 2026-06-03 20:33:55 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 0s. Last read position: chr5:151,746,378 INFO 2026-06-03 20:33:56 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 0s. Last read position: chr5:163,456,929 INFO 2026-06-03 20:33:57 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 0s. Last read position: chr5:171,400,159 INFO 2026-06-03 20:33:58 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 0s. Last read position: chr5:175,521,968 INFO 2026-06-03 20:33:58 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 0s. Last read position: chr5:177,466,771 INFO 2026-06-03 20:33:59 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 0s. Last read position: chr5:179,719,729 INFO 2026-06-03 20:34:00 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 0s. Last read position: chr5:179,874,947 INFO 2026-06-03 20:34:01 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 0s. Last read position: chr6:3,410,247 INFO 2026-06-03 20:34:01 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 0s. Last read position: chr6:7,566,377 INFO 2026-06-03 20:34:02 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 0s. Last read position: chr6:12,121,431 INFO 2026-06-03 20:34:03 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 0s. Last read position: chr6:25,500,182 INFO 2026-06-03 20:34:04 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 0s. Last read position: chr6:26,545,423 INFO 2026-06-03 20:34:04 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 0s. Last read position: chr6:29,943,457 INFO 2026-06-03 20:34:05 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 0s. Last read position: chr6:30,889,334 INFO 2026-06-03 20:34:06 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 0s. Last read position: chr6:31,625,239 INFO 2026-06-03 20:34:07 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 0s. Last read position: chr6:31,732,384 INFO 2026-06-03 20:34:07 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 0s. Last read position: chr6:31,927,976 INFO 2026-06-03 20:34:08 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 0s. Last read position: chr6:32,828,810 INFO 2026-06-03 20:34:09 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 0s. Last read position: chr6:33,295,997 INFO 2026-06-03 20:34:10 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 0s. Last read position: chr6:34,417,478 INFO 2026-06-03 20:34:11 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 0s. Last read position: chr6:36,210,243 INFO 2026-06-03 20:34:11 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 0s. Last read position: chr6:42,097,808 INFO 2026-06-03 20:34:12 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 0s. Last read position: chr6:43,179,107 INFO 2026-06-03 20:34:13 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 0s. Last read position: chr6:44,231,432 INFO 2026-06-03 20:34:14 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 0s. Last read position: chr6:53,134,103 INFO 2026-06-03 20:34:14 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 0s. Last read position: chr6:75,113,235 INFO 2026-06-03 20:34:15 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 0s. Last read position: chr6:82,495,983 INFO 2026-06-03 20:34:16 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 0s. Last read position: chr6:97,246,629 INFO 2026-06-03 20:34:17 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 0s. Last read position: chr6:110,893,514 INFO 2026-06-03 20:34:17 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 0s. Last read position: chr6:125,257,096 INFO 2026-06-03 20:34:18 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 0s. Last read position: chr6:136,345,953 INFO 2026-06-03 20:34:19 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 0s. Last read position: chr6:144,458,885 INFO 2026-06-03 20:34:20 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 0s. Last read position: chr6:151,618,036 INFO 2026-06-03 20:34:20 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 0s. Last read position: chr6:151,944,234 INFO 2026-06-03 20:34:21 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 0s. Last read position: chr6:158,503,323 INFO 2026-06-03 20:34:22 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 0s. Last read position: chr6:163,455,402 INFO 2026-06-03 20:34:23 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 0s. Last read position: chr7:754,627 INFO 2026-06-03 20:34:24 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 0s. Last read position: chr7:2,571,607 INFO 2026-06-03 20:34:24 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 0s. Last read position: chr7:5,388,230 INFO 2026-06-03 20:34:25 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 0s. Last read position: chr7:5,529,542 INFO 2026-06-03 20:34:26 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 0s. Last read position: chr7:11,636,579 INFO 2026-06-03 20:34:27 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 0s. Last read position: chr7:16,794,957 INFO 2026-06-03 20:34:27 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 0s. Last read position: chr7:17,796,895 INFO 2026-06-03 20:34:28 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 0s. Last read position: chr7:30,615,945 INFO 2026-06-03 20:34:29 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 0s. Last read position: chr7:44,036,720 INFO 2026-06-03 20:34:30 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 0s. Last read position: chr7:45,610,390 INFO 2026-06-03 20:34:30 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 0s. Last read position: chr7:66,004,038 INFO 2026-06-03 20:34:31 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 0s. Last read position: chr7:73,198,756 INFO 2026-06-03 20:34:32 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 0s. Last read position: chr7:74,711,082 INFO 2026-06-03 20:34:33 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 0s. Last read position: chr7:75,538,215 INFO 2026-06-03 20:34:33 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 0s. Last read position: chr7:76,303,827 INFO 2026-06-03 20:34:34 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 0s. Last read position: chr7:82,953,721 INFO 2026-06-03 20:34:35 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 0s. Last read position: chr7:92,398,389 INFO 2026-06-03 20:34:36 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 0s. Last read position: chr7:98,917,488 INFO 2026-06-03 20:34:37 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 0s. Last read position: chr7:100,098,044 INFO 2026-06-03 20:34:37 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 0s. Last read position: chr7:100,707,015 INFO 2026-06-03 20:34:38 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 0s. Last read position: chr7:102,489,051 INFO 2026-06-03 20:34:39 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 0s. Last read position: chr7:103,086,708 INFO 2026-06-03 20:34:40 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 0s. Last read position: chr7:117,099,760 INFO 2026-06-03 20:34:40 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 0s. Last read position: chr7:128,338,125 INFO 2026-06-03 20:34:41 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 0s. Last read position: chr7:135,616,692 INFO 2026-06-03 20:34:42 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 0s. Last read position: chr7:140,007,115 INFO 2026-06-03 20:34:43 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 0s. Last read position: chr7:143,757,177 INFO 2026-06-03 20:34:43 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 0s. Last read position: chr7:149,722,436 INFO 2026-06-03 20:34:44 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 0s. Last read position: chr7:151,081,217 INFO 2026-06-03 20:34:45 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 0s. Last read position: chr7:155,738,338 INFO 2026-06-03 20:34:46 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 0s. Last read position: chr8:11,808,833 INFO 2026-06-03 20:34:46 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 0s. Last read position: chr8:22,101,779 INFO 2026-06-03 20:34:47 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 0s. Last read position: chr8:28,716,310 INFO 2026-06-03 20:34:48 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 0s. Last read position: chr8:37,697,468 INFO 2026-06-03 20:34:49 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 0s. Last read position: chr8:37,698,155 INFO 2026-06-03 20:34:49 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 0s. Last read position: chr8:37,846,918 INFO 2026-06-03 20:34:50 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 0s. Last read position: chr8:37,872,980 INFO 2026-06-03 20:34:51 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 0s. Last read position: chr8:37,899,061 INFO 2026-06-03 20:34:52 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 0s. Last read position: chr8:38,177,066 INFO 2026-06-03 20:34:52 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 0s. Last read position: chr8:38,267,810 INFO 2026-06-03 20:34:53 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 0s. Last read position: chr8:38,299,539 INFO 2026-06-03 20:34:54 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 0s. Last read position: chr8:38,329,606 INFO 2026-06-03 20:34:55 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 0s. Last read position: chr8:38,347,982 INFO 2026-06-03 20:34:56 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 0s. Last read position: chr8:38,414,859 INFO 2026-06-03 20:34:56 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 0s. Last read position: chr8:38,427,950 INFO 2026-06-03 20:34:57 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 0s. Last read position: chr8:38,820,576 INFO 2026-06-03 20:34:58 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 0s. Last read position: chr8:47,737,716 INFO 2026-06-03 20:34:59 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 0s. Last read position: chr8:51,820,607 INFO 2026-06-03 20:34:59 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 0s. Last read position: chr8:60,558,849 INFO 2026-06-03 20:35:00 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 0s. Last read position: chr8:67,259,856 INFO 2026-06-03 20:35:01 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 0s. Last read position: chr8:73,794,069 INFO 2026-06-03 20:35:02 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 0s. Last read position: chr8:86,474,829 INFO 2026-06-03 20:35:02 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 0s. Last read position: chr8:94,940,177 INFO 2026-06-03 20:35:03 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 0s. Last read position: chr8:99,853,988 INFO 2026-06-03 20:35:04 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 0s. Last read position: chr8:100,721,469 INFO 2026-06-03 20:35:05 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 0s. Last read position: chr8:103,328,316 INFO 2026-06-03 20:35:05 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 0s. Last read position: chr8:115,415,031 INFO 2026-06-03 20:35:06 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 0s. Last read position: chr8:115,604,917 INFO 2026-06-03 20:35:07 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 0s. Last read position: chr8:118,110,802 INFO 2026-06-03 20:35:08 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 0s. Last read position: chr8:124,555,886 INFO 2026-06-03 20:35:08 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 0s. Last read position: chr8:132,814,862 INFO 2026-06-03 20:35:09 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 0s. Last read position: chr8:143,020,895 INFO 2026-06-03 20:35:10 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 0s. Last read position: chr8:143,488,238 INFO 2026-06-03 20:35:11 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 0s. Last read position: chr8:143,722,159 INFO 2026-06-03 20:35:12 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 0s. Last read position: chr8:143,815,214 INFO 2026-06-03 20:35:12 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 0s. Last read position: chr8:143,858,372 INFO 2026-06-03 20:35:13 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 0s. Last read position: chr8:143,859,046 INFO 2026-06-03 20:35:14 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 0s. Last read position: chr8:143,859,916 INFO 2026-06-03 20:35:14 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 0s. Last read position: chr8:143,860,628 INFO 2026-06-03 20:35:15 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 0s. Last read position: chr8:143,861,150 INFO 2026-06-03 20:35:16 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 0s. Last read position: chr8:143,861,549 INFO 2026-06-03 20:35:16 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 0s. Last read position: chr8:143,862,204 INFO 2026-06-03 20:35:17 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 0s. Last read position: chr8:143,862,654 INFO 2026-06-03 20:35:18 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 0s. Last read position: chr8:143,863,113 INFO 2026-06-03 20:35:19 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 0s. Last read position: chr8:143,863,663 INFO 2026-06-03 20:35:19 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 0s. Last read position: chr8:143,864,244 INFO 2026-06-03 20:35:20 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 0s. Last read position: chr8:143,864,740 INFO 2026-06-03 20:35:21 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 0s. Last read position: chr8:143,865,388 INFO 2026-06-03 20:35:21 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 0s. Last read position: chr8:143,865,818 INFO 2026-06-03 20:35:22 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 0s. Last read position: chr8:143,866,293 INFO 2026-06-03 20:35:23 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 0s. Last read position: chr8:143,870,783 INFO 2026-06-03 20:35:23 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 0s. Last read position: chr8:143,919,961 INFO 2026-06-03 20:35:24 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 0s. Last read position: chr8:143,930,422 INFO 2026-06-03 20:35:25 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 0s. Last read position: chr8:144,057,611 INFO 2026-06-03 20:35:26 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 0s. Last read position: chr8:144,316,662 INFO 2026-06-03 20:35:26 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 0s. Last read position: chr8:144,473,174 INFO 2026-06-03 20:35:27 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 0s. Last read position: chr8:144,841,666 INFO 2026-06-03 20:35:28 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 0s. Last read position: chr9:6,007,700 INFO 2026-06-03 20:35:29 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 0s. Last read position: chr9:21,818,169 INFO 2026-06-03 20:35:30 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 0s. Last read position: chr9:34,257,751 INFO 2026-06-03 20:35:30 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 0s. Last read position: chr9:35,713,245 INFO 2026-06-03 20:35:31 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 0s. Last read position: chr9:65,289,675 INFO 2026-06-03 20:35:32 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 0s. Last read position: chr9:83,679,938 INFO 2026-06-03 20:35:33 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 0s. Last read position: chr9:91,410,439 INFO 2026-06-03 20:35:33 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 0s. Last read position: chr9:94,800,839 INFO 2026-06-03 20:35:34 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 0s. Last read position: chr9:105,299,239 INFO 2026-06-03 20:35:35 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 0s. Last read position: chr9:112,262,484 INFO 2026-06-03 20:35:36 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 0s. Last read position: chr9:114,504,226 INFO 2026-06-03 20:35:36 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 0s. Last read position: chr9:123,103,092 INFO 2026-06-03 20:35:37 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 0s. Last read position: chr9:126,833,611 INFO 2026-06-03 20:35:38 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 0s. Last read position: chr9:128,179,050 INFO 2026-06-03 20:35:39 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 0s. Last read position: chr9:128,633,932 INFO 2026-06-03 20:35:40 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 0s. Last read position: chr9:129,828,034 INFO 2026-06-03 20:35:40 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 0s. Last read position: chr9:131,475,041 INFO 2026-06-03 20:35:41 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 0s. Last read position: chr9:133,364,956 INFO 2026-06-03 20:35:42 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 0s. Last read position: chr9:136,292,657 INFO 2026-06-03 20:35:43 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 0s. Last read position: chr9:136,502,002 INFO 2026-06-03 20:35:43 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 0s. Last read position: chr9:137,039,831 INFO 2026-06-03 20:35:44 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 0s. Last read position: chr9:137,457,525 INFO 2026-06-03 20:35:45 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 0s. Last read position: chr10:5,652,816 INFO 2026-06-03 20:35:46 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 0s. Last read position: chr10:8,064,019 INFO 2026-06-03 20:35:46 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 0s. Last read position: chr10:18,545,830 INFO 2026-06-03 20:35:47 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 0s. Last read position: chr10:27,122,959 INFO 2026-06-03 20:35:48 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 0s. Last read position: chr10:32,033,844 INFO 2026-06-03 20:35:49 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 0s. Last read position: chr10:38,016,995 INFO 2026-06-03 20:35:49 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 0s. Last read position: chr10:46,010,574 INFO 2026-06-03 20:35:50 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 0s. Last read position: chr10:59,814,719 INFO 2026-06-03 20:35:51 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 0s. Last read position: chr10:69,392,236 INFO 2026-06-03 20:35:52 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 0s. Last read position: chr10:73,766,420 INFO 2026-06-03 20:35:53 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 0s. Last read position: chr10:77,821,259 INFO 2026-06-03 20:35:53 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 0s. Last read position: chr10:84,141,472 INFO 2026-06-03 20:35:54 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 0s. Last read position: chr10:89,402,362 INFO 2026-06-03 20:35:55 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 0s. Last read position: chr10:94,402,566 INFO 2026-06-03 20:35:56 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 0s. Last read position: chr10:98,392,555 INFO 2026-06-03 20:35:56 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 0s. Last read position: chr10:101,579,798 INFO 2026-06-03 20:35:57 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 0s. Last read position: chr10:102,656,982 INFO 2026-06-03 20:35:58 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 0s. Last read position: chr10:110,894,462 INFO 2026-06-03 20:35:59 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 0s. Last read position: chr10:116,929,987 INFO 2026-06-03 20:35:59 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 0s. Last read position: chr10:122,087,485 INFO 2026-06-03 20:36:00 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 0s. Last read position: chr10:132,405,202 INFO 2026-06-03 20:36:01 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 0s. Last read position: chr11:315,103 INFO 2026-06-03 20:36:02 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 0s. Last read position: chr11:556,334 INFO 2026-06-03 20:36:03 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 0s. Last read position: chr11:830,652 INFO 2026-06-03 20:36:03 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 0s. Last read position: chr11:1,228,698 INFO 2026-06-03 20:36:04 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 0s. Last read position: chr11:1,247,199 INFO 2026-06-03 20:36:05 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 0s. Last read position: chr11:1,735,324 INFO 2026-06-03 20:36:05 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 0s. Last read position: chr11:1,761,379 INFO 2026-06-03 20:36:06 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 0s. Last read position: chr11:3,824,309 INFO 2026-06-03 20:36:07 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 0s. Last read position: chr11:7,466,809 INFO 2026-06-03 20:36:08 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 0s. Last read position: chr11:10,802,101 INFO 2026-06-03 20:36:09 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 0s. Last read position: chr11:17,312,090 INFO 2026-06-03 20:36:09 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 0s. Last read position: chr11:33,141,627 INFO 2026-06-03 20:36:10 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 0s. Last read position: chr11:43,838,317 INFO 2026-06-03 20:36:11 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 0s. Last read position: chr11:46,665,444 INFO 2026-06-03 20:36:12 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 0s. Last read position: chr11:47,813,033 INFO 2026-06-03 20:36:12 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 0s. Last read position: chr11:57,815,929 INFO 2026-06-03 20:36:13 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 0s. Last read position: chr11:62,242,265 INFO 2026-06-03 20:36:14 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 0s. Last read position: chr11:62,270,989 INFO 2026-06-03 20:36:15 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 0s. Last read position: chr11:62,528,460 INFO 2026-06-03 20:36:15 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 0s. Last read position: chr11:62,881,177 INFO 2026-06-03 20:36:16 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 0s. Last read position: chr11:64,824,424 INFO 2026-06-03 20:36:17 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 0s. Last read position: chr11:65,630,409 INFO 2026-06-03 20:36:18 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 0s. Last read position: chr11:66,625,297 INFO 2026-06-03 20:36:18 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 0s. Last read position: chr11:67,254,871 INFO 2026-06-03 20:36:19 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 0s. Last read position: chr11:67,365,377 INFO 2026-06-03 20:36:20 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 0s. Last read position: chr11:67,498,214 INFO 2026-06-03 20:36:21 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 0s. Last read position: chr11:68,750,437 INFO 2026-06-03 20:36:22 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 0s. Last read position: chr11:69,641,413 INFO 2026-06-03 20:36:22 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 0s. Last read position: chr11:69,643,880 INFO 2026-06-03 20:36:23 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 0s. Last read position: chr11:69,651,183 INFO 2026-06-03 20:36:24 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 0s. Last read position: chr11:70,407,546 INFO 2026-06-03 20:36:25 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 0s. Last read position: chr11:72,024,316 INFO 2026-06-03 20:36:25 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 0s. Last read position: chr11:72,228,826 INFO 2026-06-03 20:36:26 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 0s. Last read position: chr11:72,692,762 INFO 2026-06-03 20:36:27 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 0s. Last read position: chr11:72,755,045 INFO 2026-06-03 20:36:28 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 0s. Last read position: chr11:72,780,975 INFO 2026-06-03 20:36:28 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 0s. Last read position: chr11:73,297,005 INFO 2026-06-03 20:36:29 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 0s. Last read position: chr11:74,852,004 INFO 2026-06-03 20:36:30 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 0s. Last read position: chr11:75,566,743 INFO 2026-06-03 20:36:31 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 0s. Last read position: chr11:76,535,912 INFO 2026-06-03 20:36:31 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 0s. Last read position: chr11:77,323,263 INFO 2026-06-03 20:36:32 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 0s. Last read position: chr11:77,876,873 INFO 2026-06-03 20:36:33 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 0s. Last read position: chr11:78,101,116 INFO 2026-06-03 20:36:34 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 0s. Last read position: chr11:78,173,824 INFO 2026-06-03 20:36:34 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 0s. Last read position: chr11:78,280,695 INFO 2026-06-03 20:36:35 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 0s. Last read position: chr11:101,128,114 INFO 2026-06-03 20:36:36 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 0s. Last read position: chr11:117,205,990 INFO 2026-06-03 20:36:37 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 0s. Last read position: chr11:119,277,801 INFO 2026-06-03 20:36:37 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 0s. Last read position: chr11:128,694,200 INFO 2026-06-03 20:36:38 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 0s. Last read position: chr12:830,158 INFO 2026-06-03 20:36:39 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 0s. Last read position: chr12:2,888,213 INFO 2026-06-03 20:36:40 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 0s. Last read position: chr12:6,587,388 INFO 2026-06-03 20:36:41 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 0s. Last read position: chr12:6,944,387 INFO 2026-06-03 20:36:41 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 0s. Last read position: chr12:12,718,184 INFO 2026-06-03 20:36:42 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 0s. Last read position: chr12:31,984,084 INFO 2026-06-03 20:36:43 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 0s. Last read position: chr12:47,791,616 INFO 2026-06-03 20:36:44 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 0s. Last read position: chr12:48,845,574 INFO 2026-06-03 20:36:44 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 0s. Last read position: chr12:49,053,514 INFO 2026-06-03 20:36:45 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 0s. Last read position: chr12:49,559,456 INFO 2026-06-03 20:36:46 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 0s. Last read position: chr12:50,992,278 INFO 2026-06-03 20:36:47 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 0s. Last read position: chr12:51,505,832 INFO 2026-06-03 20:36:47 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 0s. Last read position: chr12:52,902,067 INFO 2026-06-03 20:36:48 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 0s. Last read position: chr12:52,952,243 INFO 2026-06-03 20:36:49 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 0s. Last read position: chr12:53,291,794 INFO 2026-06-03 20:36:50 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 0s. Last read position: chr12:53,482,853 INFO 2026-06-03 20:36:50 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 0s. Last read position: chr12:54,345,487 INFO 2026-06-03 20:36:51 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 0s. Last read position: chr12:56,086,612 INFO 2026-06-03 20:36:52 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 0s. Last read position: chr12:56,171,842 INFO 2026-06-03 20:36:53 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 0s. Last read position: chr12:56,612,117 INFO 2026-06-03 20:36:53 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 0s. Last read position: chr12:57,091,980 INFO 2026-06-03 20:36:54 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 0s. Last read position: chr12:57,255,047 INFO 2026-06-03 20:36:55 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 0s. Last read position: chr12:57,716,129 INFO 2026-06-03 20:36:56 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 0s. Last read position: chr12:65,170,865 INFO 2026-06-03 20:36:57 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 0s. Last read position: chr12:69,258,757 INFO 2026-06-03 20:36:57 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 0s. Last read position: chr12:79,596,614 INFO 2026-06-03 20:36:58 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 0s. Last read position: chr12:95,861,225 INFO 2026-06-03 20:36:59 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 0s. Last read position: chr12:103,930,445 INFO 2026-06-03 20:37:00 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 0s. Last read position: chr12:108,523,480 INFO 2026-06-03 20:37:00 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 0s. Last read position: chr12:110,344,888 INFO 2026-06-03 20:37:01 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 0s. Last read position: chr12:112,183,133 INFO 2026-06-03 20:37:02 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 0s. Last read position: chr12:113,004,952 INFO 2026-06-03 20:37:03 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 0s. Last read position: chr12:116,008,799 INFO 2026-06-03 20:37:03 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 0s. Last read position: chr12:120,145,061 INFO 2026-06-03 20:37:04 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 0s. Last read position: chr12:120,737,941 INFO 2026-06-03 20:37:05 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 0s. Last read position: chr12:122,216,533 INFO 2026-06-03 20:37:06 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 0s. Last read position: chr12:123,395,134 INFO 2026-06-03 20:37:07 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 0s. Last read position: chr12:124,347,858 INFO 2026-06-03 20:37:07 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 0s. Last read position: chr12:131,851,112 INFO 2026-06-03 20:37:08 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 0s. Last read position: chr12:132,774,188 INFO 2026-06-03 20:37:09 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 0s. Last read position: chr13:20,061,084 INFO 2026-06-03 20:37:10 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 0s. Last read position: chr13:28,272,049 INFO 2026-06-03 20:37:10 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 0s. Last read position: chr13:39,017,544 INFO 2026-06-03 20:37:11 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 0s. Last read position: chr13:48,256,293 INFO 2026-06-03 20:37:12 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 0s. Last read position: chr13:72,745,133 INFO 2026-06-03 20:37:13 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 0s. Last read position: chr13:98,809,420 INFO 2026-06-03 20:37:13 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 0s. Last read position: chr13:110,198,581 INFO 2026-06-03 20:37:14 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 0s. Last read position: chr13:113,320,443 INFO 2026-06-03 20:37:15 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 0s. Last read position: chr14:21,233,978 INFO 2026-06-03 20:37:16 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 0s. Last read position: chr14:23,061,314 INFO 2026-06-03 20:37:17 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 0s. Last read position: chr14:24,121,457 INFO 2026-06-03 20:37:17 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 0s. Last read position: chr14:24,368,265 INFO 2026-06-03 20:37:18 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 0s. Last read position: chr14:31,294,082 INFO 2026-06-03 20:37:19 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 0s. Last read position: chr14:39,181,466 INFO 2026-06-03 20:37:20 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 0s. Last read position: chr14:49,894,169 INFO 2026-06-03 20:37:20 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 0s. Last read position: chr14:56,605,528 INFO 2026-06-03 20:37:21 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 0s. Last read position: chr14:64,220,494 INFO 2026-06-03 20:37:22 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 0s. Last read position: chr14:68,880,920 INFO 2026-06-03 20:37:23 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 0s. Last read position: chr14:73,498,119 INFO 2026-06-03 20:37:23 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 0s. Last read position: chr14:74,778,461 INFO 2026-06-03 20:37:24 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 0s. Last read position: chr14:77,459,652 INFO 2026-06-03 20:37:25 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 0s. Last read position: chr14:92,143,133 INFO 2026-06-03 20:37:26 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 0s. Last read position: chr14:95,107,986 INFO 2026-06-03 20:37:27 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 0s. Last read position: chr14:101,901,755 INFO 2026-06-03 20:37:27 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 0s. Last read position: chr14:102,939,892 INFO 2026-06-03 20:37:28 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 0s. Last read position: chr14:104,773,960 INFO 2026-06-03 20:37:29 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 0s. Last read position: chr14:104,948,855 INFO 2026-06-03 20:37:30 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 0s. Last read position: chr14:105,498,778 INFO 2026-06-03 20:37:30 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 0s. Last read position: chr15:28,260,939 INFO 2026-06-03 20:37:31 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 0s. Last read position: chr15:34,856,868 INFO 2026-06-03 20:37:32 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 0s. Last read position: chr15:39,593,523 INFO 2026-06-03 20:37:33 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 0s. Last read position: chr15:40,873,998 INFO 2026-06-03 20:37:33 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 0s. Last read position: chr15:42,421,930 INFO 2026-06-03 20:37:34 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 0s. Last read position: chr15:43,756,754 INFO 2026-06-03 20:37:35 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 0s. Last read position: chr15:44,651,518 INFO 2026-06-03 20:37:36 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 0s. Last read position: chr15:52,251,317 INFO 2026-06-03 20:37:36 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 0s. Last read position: chr15:59,677,218 INFO 2026-06-03 20:37:37 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 0s. Last read position: chr15:63,677,776 INFO 2026-06-03 20:37:38 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 0s. Last read position: chr15:65,877,909 INFO 2026-06-03 20:37:39 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 0s. Last read position: chr15:71,215,342 INFO 2026-06-03 20:37:40 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 0s. Last read position: chr15:72,752,557 INFO 2026-06-03 20:37:40 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 0s. Last read position: chr15:75,356,331 INFO 2026-06-03 20:37:41 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 0s. Last read position: chr15:78,484,851 INFO 2026-06-03 20:37:42 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 0s. Last read position: chr15:84,670,022 INFO 2026-06-03 20:37:43 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 0s. Last read position: chr15:90,225,121 INFO 2026-06-03 20:37:43 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 0s. Last read position: chr15:98,707,912 INFO 2026-06-03 20:37:44 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 0s. Last read position: chr16:397,237 INFO 2026-06-03 20:37:45 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 0s. Last read position: chr16:715,838 INFO 2026-06-03 20:37:46 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 0s. Last read position: chr16:1,494,287 INFO 2026-06-03 20:37:46 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 0s. Last read position: chr16:2,037,909 INFO 2026-06-03 20:37:47 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 0s. Last read position: chr16:2,277,935 INFO 2026-06-03 20:37:48 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 0s. Last read position: chr16:2,762,419 INFO 2026-06-03 20:37:49 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 0s. Last read position: chr16:2,967,064 INFO 2026-06-03 20:37:50 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 0s. Last read position: chr16:3,850,916 INFO 2026-06-03 20:37:50 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 0s. Last read position: chr16:5,078,844 INFO 2026-06-03 20:37:51 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 0s. Last read position: chr16:14,186,891 INFO 2026-06-03 20:37:52 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 0s. Last read position: chr16:14,930,880 INFO 2026-06-03 20:37:53 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 0s. Last read position: chr16:16,169,646 INFO 2026-06-03 20:37:53 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 0s. Last read position: chr16:16,372,059 INFO 2026-06-03 20:37:54 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 0s. Last read position: chr16:18,391,169 INFO 2026-06-03 20:37:55 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 0s. Last read position: chr16:20,813,188 INFO 2026-06-03 20:37:56 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 0s. Last read position: chr16:21,837,450 INFO 2026-06-03 20:37:56 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 0s. Last read position: chr16:22,533,884 INFO 2026-06-03 20:37:57 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 0s. Last read position: chr16:27,464,559 INFO 2026-06-03 20:37:58 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 0s. Last read position: chr16:28,831,042 INFO 2026-06-03 20:37:59 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 0s. Last read position: chr16:29,484,906 INFO 2026-06-03 20:37:59 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 0s. Last read position: chr16:29,986,767 INFO 2026-06-03 20:38:00 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 0s. Last read position: chr16:30,239,040 INFO 2026-06-03 20:38:01 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 0s. Last read position: chr16:30,720,794 INFO 2026-06-03 20:38:02 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 0s. Last read position: chr16:31,139,223 INFO 2026-06-03 20:38:02 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 0s. Last read position: chr16:31,329,255 INFO 2026-06-03 20:38:03 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 0s. Last read position: chr16:54,933,596 INFO 2026-06-03 20:38:04 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 0s. Last read position: chr16:66,727,758 INFO 2026-06-03 20:38:05 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 0s. Last read position: chr16:68,737,405 INFO 2026-06-03 20:38:05 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 0s. Last read position: chr16:70,568,289 INFO 2026-06-03 20:38:06 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 0s. Last read position: chr16:80,633,030 INFO 2026-06-03 20:38:07 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 0s. Last read position: chr16:88,432,087 INFO 2026-06-03 20:38:08 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 0s. Last read position: chr16:89,883,442 INFO 2026-06-03 20:38:08 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 0s. Last read position: chr17:1,364,990 INFO 2026-06-03 20:38:09 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 0s. Last read position: chr17:1,730,839 INFO 2026-06-03 20:38:10 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 0s. Last read position: chr17:3,813,087 INFO 2026-06-03 20:38:11 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 0s. Last read position: chr17:4,940,974 INFO 2026-06-03 20:38:12 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 0s. Last read position: chr17:7,196,997 INFO 2026-06-03 20:38:12 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 0s. Last read position: chr17:7,439,756 INFO 2026-06-03 20:38:13 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 0s. Last read position: chr17:7,577,847 INFO 2026-06-03 20:38:14 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 0s. Last read position: chr17:8,045,309 INFO 2026-06-03 20:38:15 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 0s. Last read position: chr17:15,613,802 INFO 2026-06-03 20:38:15 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 0s. Last read position: chr17:17,792,974 INFO 2026-06-03 20:38:16 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 0s. Last read position: chr17:17,882,761 INFO 2026-06-03 20:38:17 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 0s. Last read position: chr17:19,810,429 INFO 2026-06-03 20:38:18 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 0s. Last read position: chr17:28,634,839 INFO 2026-06-03 20:38:18 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 0s. Last read position: chr17:29,566,386 INFO 2026-06-03 20:38:19 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 0s. Last read position: chr17:32,208,106 INFO 2026-06-03 20:38:20 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 0s. Last read position: chr17:36,320,054 INFO 2026-06-03 20:38:21 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 0s. Last read position: chr17:38,725,633 INFO 2026-06-03 20:38:22 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 0s. Last read position: chr17:39,709,354 INFO 2026-06-03 20:38:22 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 0s. Last read position: chr17:39,726,566 INFO 2026-06-03 20:38:23 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 0s. Last read position: chr17:40,348,320 INFO 2026-06-03 20:38:24 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 0s. Last read position: chr17:41,524,842 INFO 2026-06-03 20:38:25 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 0s. Last read position: chr17:41,878,147 INFO 2026-06-03 20:38:25 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 0s. Last read position: chr17:42,613,015 INFO 2026-06-03 20:38:26 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 0s. Last read position: chr17:44,075,425 INFO 2026-06-03 20:38:27 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 0s. Last read position: chr17:45,149,832 INFO 2026-06-03 20:38:28 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 0s. Last read position: chr17:47,669,678 INFO 2026-06-03 20:38:28 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 0s. Last read position: chr17:50,143,624 INFO 2026-06-03 20:38:29 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 0s. Last read position: chr17:50,192,796 INFO 2026-06-03 20:38:30 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 0s. Last read position: chr17:50,354,443 INFO 2026-06-03 20:38:31 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 0s. Last read position: chr17:56,895,364 INFO 2026-06-03 20:38:32 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 0s. Last read position: chr17:59,655,912 INFO 2026-06-03 20:38:32 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 0s. Last read position: chr17:60,078,705 INFO 2026-06-03 20:38:33 SinglePassSamProgram Processed 532,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 0s. Last read position: chr17:63,831,779 INFO 2026-06-03 20:38:34 SinglePassSamProgram Processed 533,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 0s. Last read position: chr17:67,959,620 INFO 2026-06-03 20:38:35 SinglePassSamProgram Processed 534,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 0s. Last read position: chr17:73,286,396 INFO 2026-06-03 20:38:35 SinglePassSamProgram Processed 535,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 0s. Last read position: chr17:75,093,689 INFO 2026-06-03 20:38:36 SinglePassSamProgram Processed 536,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 0s. Last read position: chr17:75,778,589 INFO 2026-06-03 20:38:37 SinglePassSamProgram Processed 537,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 0s. Last read position: chr17:76,473,290 INFO 2026-06-03 20:38:38 SinglePassSamProgram Processed 538,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 0s. Last read position: chr17:78,125,813 INFO 2026-06-03 20:38:38 SinglePassSamProgram Processed 539,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 0s. Last read position: chr17:78,997,431 INFO 2026-06-03 20:38:39 SinglePassSamProgram Processed 540,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 0s. Last read position: chr17:80,358,309 INFO 2026-06-03 20:38:40 SinglePassSamProgram Processed 541,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 0s. Last read position: chr17:81,690,674 INFO 2026-06-03 20:38:41 SinglePassSamProgram Processed 542,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 0s. Last read position: chr17:82,036,912 INFO 2026-06-03 20:38:42 SinglePassSamProgram Processed 543,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 0s. Last read position: chr17:82,085,850 INFO 2026-06-03 20:38:42 SinglePassSamProgram Processed 544,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 0s. Last read position: chr17:82,249,460 INFO 2026-06-03 20:38:43 SinglePassSamProgram Processed 545,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 0s. Last read position: chr18:8,088,782 INFO 2026-06-03 20:38:44 SinglePassSamProgram Processed 546,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 0s. Last read position: chr18:21,573,990 INFO 2026-06-03 20:38:45 SinglePassSamProgram Processed 547,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 0s. Last read position: chr18:31,830,692 INFO 2026-06-03 20:38:45 SinglePassSamProgram Processed 548,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 0s. Last read position: chr18:36,156,465 INFO 2026-06-03 20:38:46 SinglePassSamProgram Processed 549,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 0s. Last read position: chr18:49,912,061 INFO 2026-06-03 20:38:47 SinglePassSamProgram Processed 550,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 0s. Last read position: chr18:62,192,162 INFO 2026-06-03 20:38:48 SinglePassSamProgram Processed 551,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 0s. Last read position: chr18:79,486,548 INFO 2026-06-03 20:38:48 SinglePassSamProgram Processed 552,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 0s. Last read position: chr19:972,048 INFO 2026-06-03 20:38:49 SinglePassSamProgram Processed 553,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 0s. Last read position: chr19:1,556,243 INFO 2026-06-03 20:38:50 SinglePassSamProgram Processed 554,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 0s. Last read position: chr19:3,014,605 INFO 2026-06-03 20:38:51 SinglePassSamProgram Processed 555,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 0s. Last read position: chr19:4,504,526 INFO 2026-06-03 20:38:52 SinglePassSamProgram Processed 556,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 0s. Last read position: chr19:5,719,749 INFO 2026-06-03 20:38:52 SinglePassSamProgram Processed 557,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 0s. Last read position: chr19:7,642,238 INFO 2026-06-03 20:38:53 SinglePassSamProgram Processed 558,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 0s. Last read position: chr19:10,162,681 INFO 2026-06-03 20:38:54 SinglePassSamProgram Processed 559,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 0s. Last read position: chr19:11,248,127 INFO 2026-06-03 20:38:55 SinglePassSamProgram Processed 560,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 0s. Last read position: chr19:12,792,372 INFO 2026-06-03 20:38:55 SinglePassSamProgram Processed 561,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 0s. Last read position: chr19:14,441,057 INFO 2026-06-03 20:38:56 SinglePassSamProgram Processed 562,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 0s. Last read position: chr19:15,269,028 INFO 2026-06-03 20:38:57 SinglePassSamProgram Processed 563,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 0s. Last read position: chr19:17,301,439 INFO 2026-06-03 20:38:58 SinglePassSamProgram Processed 564,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 0s. Last read position: chr19:18,760,076 INFO 2026-06-03 20:38:59 SinglePassSamProgram Processed 565,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 0s. Last read position: chr19:30,014,985 INFO 2026-06-03 20:38:59 SinglePassSamProgram Processed 566,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 0s. Last read position: chr19:35,267,473 INFO 2026-06-03 20:39:00 SinglePassSamProgram Processed 567,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 0s. Last read position: chr19:36,100,667 INFO 2026-06-03 20:39:01 SinglePassSamProgram Processed 568,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 0s. Last read position: chr19:38,309,231 INFO 2026-06-03 20:39:02 SinglePassSamProgram Processed 569,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 0s. Last read position: chr19:39,176,707 INFO 2026-06-03 20:39:02 SinglePassSamProgram Processed 570,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 0s. Last read position: chr19:40,235,299 INFO 2026-06-03 20:39:03 SinglePassSamProgram Processed 571,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 0s. Last read position: chr19:40,807,136 INFO 2026-06-03 20:39:04 SinglePassSamProgram Processed 572,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 0s. Last read position: chr19:42,249,599 INFO 2026-06-03 20:39:05 SinglePassSamProgram Processed 573,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 0s. Last read position: chr19:43,502,144 INFO 2026-06-03 20:39:05 SinglePassSamProgram Processed 574,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 0s. Last read position: chr19:44,908,677 INFO 2026-06-03 20:39:06 SinglePassSamProgram Processed 575,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 0s. Last read position: chr19:45,688,386 INFO 2026-06-03 20:39:07 SinglePassSamProgram Processed 576,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 0s. Last read position: chr19:46,787,947 INFO 2026-06-03 20:39:08 SinglePassSamProgram Processed 577,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 0s. Last read position: chr19:48,384,399 INFO 2026-06-03 20:39:08 SinglePassSamProgram Processed 578,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 0s. Last read position: chr19:49,140,050 INFO 2026-06-03 20:39:09 SinglePassSamProgram Processed 579,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 0s. Last read position: chr19:49,651,570 INFO 2026-06-03 20:39:10 SinglePassSamProgram Processed 580,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 0s. Last read position: chr19:50,217,649 INFO 2026-06-03 20:39:11 SinglePassSamProgram Processed 581,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 0s. Last read position: chr19:53,116,152 INFO 2026-06-03 20:39:12 SinglePassSamProgram Processed 582,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 0s. Last read position: chr19:54,462,526 INFO 2026-06-03 20:39:12 SinglePassSamProgram Processed 583,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 0s. Last read position: chr19:55,579,029 INFO 2026-06-03 20:39:13 SinglePassSamProgram Processed 584,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 0s. Last read position: chr19:56,821,673 INFO 2026-06-03 20:39:14 SinglePassSamProgram Processed 585,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 0s. Last read position: chr19:57,809,073 INFO 2026-06-03 20:39:15 SinglePassSamProgram Processed 586,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 0s. Last read position: chr19:58,037,868 INFO 2026-06-03 20:39:15 SinglePassSamProgram Processed 587,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 0s. Last read position: chr20:420,926 INFO 2026-06-03 20:39:16 SinglePassSamProgram Processed 588,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 0s. Last read position: chr20:3,223,546 INFO 2026-06-03 20:39:17 SinglePassSamProgram Processed 589,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 0s. Last read position: chr20:16,732,211 INFO 2026-06-03 20:39:18 SinglePassSamProgram Processed 590,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 0s. Last read position: chr20:22,708,742 INFO 2026-06-03 20:39:18 SinglePassSamProgram Processed 591,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 0s. Last read position: chr20:32,435,058 INFO 2026-06-03 20:39:19 SinglePassSamProgram Processed 592,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 0s. Last read position: chr20:34,757,466 INFO 2026-06-03 20:39:20 SinglePassSamProgram Processed 593,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 0s. Last read position: chr20:36,190,341 INFO 2026-06-03 20:39:21 SinglePassSamProgram Processed 594,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 0s. Last read position: chr20:38,245,937 INFO 2026-06-03 20:39:22 SinglePassSamProgram Processed 595,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 0s. Last read position: chr20:44,489,353 INFO 2026-06-03 20:39:22 SinglePassSamProgram Processed 596,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 0s. Last read position: chr20:46,070,293 INFO 2026-06-03 20:39:23 SinglePassSamProgram Processed 597,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 0s. Last read position: chr20:49,094,855 INFO 2026-06-03 20:39:24 SinglePassSamProgram Processed 598,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 0s. Last read position: chr20:53,575,968 INFO 2026-06-03 20:39:25 SinglePassSamProgram Processed 599,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 0s. Last read position: chr20:58,909,346 INFO 2026-06-03 20:39:25 SinglePassSamProgram Processed 600,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 0s. Last read position: chr20:62,324,947 INFO 2026-06-03 20:39:26 SinglePassSamProgram Processed 601,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 0s. Last read position: chr20:63,286,437 INFO 2026-06-03 20:39:27 SinglePassSamProgram Processed 602,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 0s. Last read position: chr20:63,945,844 INFO 2026-06-03 20:39:28 SinglePassSamProgram Processed 603,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 0s. Last read position: chr21:8,214,742 INFO 2026-06-03 20:39:28 SinglePassSamProgram Processed 604,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 0s. Last read position: chr21:8,400,370 INFO 2026-06-03 20:39:29 SinglePassSamProgram Processed 605,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 0s. Last read position: chr21:25,955,739 INFO 2026-06-03 20:39:30 SinglePassSamProgram Processed 606,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 0s. Last read position: chr21:33,517,045 INFO 2026-06-03 20:39:31 SinglePassSamProgram Processed 607,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 0s. Last read position: chr21:36,237,288 INFO 2026-06-03 20:39:31 SinglePassSamProgram Processed 608,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 0s. Last read position: chr21:41,439,722 INFO 2026-06-03 20:39:32 SinglePassSamProgram Processed 609,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 0s. Last read position: chr21:42,313,532 INFO 2026-06-03 20:39:33 SinglePassSamProgram Processed 610,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 0s. Last read position: chr21:44,140,269 INFO 2026-06-03 20:39:34 SinglePassSamProgram Processed 611,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 0s. Last read position: chr21:45,997,460 INFO 2026-06-03 20:39:34 SinglePassSamProgram Processed 612,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 0s. Last read position: chr22:17,743,979 INFO 2026-06-03 20:39:35 SinglePassSamProgram Processed 613,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 0s. Last read position: chr22:20,996,759 INFO 2026-06-03 20:39:36 SinglePassSamProgram Processed 614,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 0s. Last read position: chr22:23,311,827 INFO 2026-06-03 20:39:37 SinglePassSamProgram Processed 615,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 0s. Last read position: chr22:25,678,862 INFO 2026-06-03 20:39:38 SinglePassSamProgram Processed 616,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 0s. Last read position: chr22:29,278,161 INFO 2026-06-03 20:39:38 SinglePassSamProgram Processed 617,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 0s. Last read position: chr22:31,095,347 INFO 2026-06-03 20:39:39 SinglePassSamProgram Processed 618,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 0s. Last read position: chr22:36,505,960 INFO 2026-06-03 20:39:40 SinglePassSamProgram Processed 619,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 0s. Last read position: chr22:38,748,712 INFO 2026-06-03 20:39:41 SinglePassSamProgram Processed 620,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 0s. Last read position: chr22:41,525,215 INFO 2026-06-03 20:39:41 SinglePassSamProgram Processed 621,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 0s. Last read position: chr22:46,362,978 INFO 2026-06-03 20:39:42 SinglePassSamProgram Processed 622,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 0s. Last read position: chr22:47,213,742 INFO 2026-06-03 20:39:43 SinglePassSamProgram Processed 623,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 0s. Last read position: chr22:50,532,105 INFO 2026-06-03 20:39:44 SinglePassSamProgram Processed 624,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 0s. Last read position: chrX:9,895,091 INFO 2026-06-03 20:39:44 SinglePassSamProgram Processed 625,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 0s. Last read position: chrX:23,785,521 INFO 2026-06-03 20:39:45 SinglePassSamProgram Processed 626,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 0s. Last read position: chrX:41,198,678 INFO 2026-06-03 20:39:46 SinglePassSamProgram Processed 627,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 0s. Last read position: chrX:47,214,947 INFO 2026-06-03 20:39:47 SinglePassSamProgram Processed 628,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 0s. Last read position: chrX:49,038,283 INFO 2026-06-03 20:39:48 SinglePassSamProgram Processed 629,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 0s. Last read position: chrX:53,431,877 INFO 2026-06-03 20:39:48 SinglePassSamProgram Processed 630,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 0s. Last read position: chrX:54,809,331 INFO 2026-06-03 20:39:49 SinglePassSamProgram Processed 631,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 0s. Last read position: chrX:71,240,944 INFO 2026-06-03 20:39:50 SinglePassSamProgram Processed 632,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 0s. Last read position: chrX:77,664,697 INFO 2026-06-03 20:39:51 SinglePassSamProgram Processed 633,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 0s. Last read position: chrX:103,586,972 INFO 2026-06-03 20:39:51 SinglePassSamProgram Processed 634,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 0s. Last read position: chrX:120,469,156 INFO 2026-06-03 20:39:52 SinglePassSamProgram Processed 635,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 0s. Last read position: chrX:136,874,226 INFO 2026-06-03 20:39:53 SinglePassSamProgram Processed 636,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 0s. Last read position: chrX:153,794,743 INFO 2026-06-03 20:39:54 SinglePassSamProgram Processed 637,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 0s. Last read position: chrX:154,432,430 INFO 2026-06-03 20:39:54 SinglePassSamProgram Processed 638,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 0s. Last read position: chrM:8,081 INFO 2026-06-03 20:39:55 SinglePassSamProgram Processed 639,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 0s. Last read position: GL000220.1:158,726 INFO 2026-06-03 20:39:56 SinglePassSamProgram Processed 640,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 0s. Last read position: KI270733.1:169,851 INFO 2026-06-03 20:39:57 RExecutor Executing R script via command: Rscript /tmp/script2644362564190915096.R /tmp/nxf.XXXXnSQXIj/aih-tih-sc-28eb14-R1_A23YTGFLT4_1_collectinsertsize.txt /tmp/nxf.XXXXnSQXIj/aih-tih-sc-28eb14-R1_A23YTGFLT4_1_collectinsertsize.pdf aih-tih-sc-28eb14-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam ERROR 2026-06-03 20:39:57 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:39:57 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:39:57 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:39:57 ProcessExecutor During startup - Warning messages: ERROR 2026-06-03 20:39:57 ProcessExecutor 1: Setting LC_CTYPE failed, using "C" ERROR 2026-06-03 20:39:57 ProcessExecutor 2: Setting LC_COLLATE failed, using "C" ERROR 2026-06-03 20:39:57 ProcessExecutor 3: Setting LC_TIME failed, using "C" ERROR 2026-06-03 20:39:57 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C" ERROR 2026-06-03 20:39:57 ProcessExecutor 5: Setting LC_MONETARY failed, using "C" ERROR 2026-06-03 20:39:57 ProcessExecutor 6: Setting LC_PAPER failed, using "C" ERROR 2026-06-03 20:39:57 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C" INFO 2026-06-03 20:39:57 ProcessExecutor null device INFO 2026-06-03 20:39:57 ProcessExecutor 1 ERROR 2026-06-03 20:39:57 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) [Wed Jun 03 20:39:57 GMT 2026] picard.analysis.CollectInsertSizeMetrics done. Elapsed time: 8.17 minutes. Runtime.totalMemory()=364904448