Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/52e4324aa8a56b7112cbab09c4e0d2/aih-tih-sc-184b05-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/56d4ce5a4bb22191e9220642e09f3d/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/56d4ce5a4bb22191e9220642e09f3d/.command.run
==> STAGING COMPLETE (3 inputs)
/usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory
INFO 2026-06-03 20:41:39 RExecutor Executing R script via command: Rscript /tmp/script9679486073834346654.R
ERROR 2026-06-03 20:41:39 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 20:41:40 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 20:41:40 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 20:41:40 ProcessExecutor During startup - Warning messages:
ERROR 2026-06-03 20:41:40 ProcessExecutor 1: Setting LC_CTYPE failed, using "C"
ERROR 2026-06-03 20:41:40 ProcessExecutor 2: Setting LC_COLLATE failed, using "C"
ERROR 2026-06-03 20:41:40 ProcessExecutor 3: Setting LC_TIME failed, using "C"
ERROR 2026-06-03 20:41:40 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C"
ERROR 2026-06-03 20:41:40 ProcessExecutor 5: Setting LC_MONETARY failed, using "C"
ERROR 2026-06-03 20:41:40 ProcessExecutor 6: Setting LC_PAPER failed, using "C"
ERROR 2026-06-03 20:41:40 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C"
INFO 2026-06-03 20:41:40 ProcessExecutor [1] "Checking if R is installed"
ERROR 2026-06-03 20:41:40 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
Jun 03, 2026 8:41:40 PM com.intel.gkl.NativeLibraryLoader load
INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so
[Wed Jun 03 20:41:40 GMT 2026] CollectInsertSizeMetrics --Histogram_FILE aih-tih-sc-184b05-R1_A23YTGFLT4_1_collectinsertsize.pdf --INPUT aih-tih-sc-184b05-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-184b05-R1_A23YTGFLT4_1_collectinsertsize.txt --DEVIATIONS 10.0 --MINIMUM_PCT 0.05 --METRIC_ACCUMULATION_LEVEL ALL_READS --INCLUDE_DUPLICATES false --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Wed Jun 03 20:41:40 GMT 2026] Executing as ?@nf-1256d4ce5a4bb22191e9220642e09f3d-dc629-khqld on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0
INFO 2026-06-03 20:41:41 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:01s. Time for last 1,000,000: 1s. Last read position: chr1:1,054,486
INFO 2026-06-03 20:41:42 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 1s. Last read position: chr1:1,437,270
INFO 2026-06-03 20:41:43 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 1s. Last read position: chr1:2,050,643
INFO 2026-06-03 20:41:44 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 1s. Last read position: chr1:3,835,005
INFO 2026-06-03 20:41:46 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 1s. Last read position: chr1:8,360,453
INFO 2026-06-03 20:41:47 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:10,629,796
INFO 2026-06-03 20:41:48 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 1s. Last read position: chr1:11,926,050
INFO 2026-06-03 20:41:49 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 1s. Last read position: chr1:15,807,561
INFO 2026-06-03 20:41:50 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:16,986,224
INFO 2026-06-03 20:41:51 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:19,210,075
INFO 2026-06-03 20:41:52 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 1s. Last read position: chr1:20,652,935
INFO 2026-06-03 20:41:53 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 1s. Last read position: chr1:21,864,199
INFO 2026-06-03 20:41:54 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 1s. Last read position: chr1:23,193,506
INFO 2026-06-03 20:41:55 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 1s. Last read position: chr1:25,617,778
INFO 2026-06-03 20:41:57 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:26,774,384
INFO 2026-06-03 20:41:58 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 1s. Last read position: chr1:28,236,133
INFO 2026-06-03 20:41:59 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 1s. Last read position: chr1:31,665,120
INFO 2026-06-03 20:42:00 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:32,771,757
INFO 2026-06-03 20:42:01 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:35,557,787
INFO 2026-06-03 20:42:02 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 1s. Last read position: chr1:39,231,187
INFO 2026-06-03 20:42:03 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:41,046,449
INFO 2026-06-03 20:42:04 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 1s. Last read position: chr1:43,553,561
INFO 2026-06-03 20:42:05 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 1s. Last read position: chr1:44,776,043
INFO 2026-06-03 20:42:07 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:46,198,521
INFO 2026-06-03 20:42:08 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 1s. Last read position: chr1:52,397,789
INFO 2026-06-03 20:42:09 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:55,052,298
INFO 2026-06-03 20:42:10 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:67,425,148
INFO 2026-06-03 20:42:11 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:86,499,923
INFO 2026-06-03 20:42:12 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:100,027,229
INFO 2026-06-03 20:42:13 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:109,668,458
INFO 2026-06-03 20:42:14 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:111,459,488
INFO 2026-06-03 20:42:15 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:114,510,710
INFO 2026-06-03 20:42:16 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:116,544,519
INFO 2026-06-03 20:42:17 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:120,808,675
INFO 2026-06-03 20:42:19 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:146,972,779
INFO 2026-06-03 20:42:20 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:149,455,545
INFO 2026-06-03 20:42:21 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:149,934,986
INFO 2026-06-03 20:42:22 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:151,024,720
INFO 2026-06-03 20:42:23 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:151,639,012
INFO 2026-06-03 20:42:24 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:153,991,585
INFO 2026-06-03 20:42:25 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:154,586,241
INFO 2026-06-03 20:42:26 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:155,169,845
INFO 2026-06-03 20:42:27 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:155,752,515
INFO 2026-06-03 20:42:28 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:156,136,390
INFO 2026-06-03 20:42:29 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:156,743,411
INFO 2026-06-03 20:42:30 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:160,323,518
INFO 2026-06-03 20:42:32 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:165,649,842
INFO 2026-06-03 20:42:33 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:169,131,300
INFO 2026-06-03 20:42:34 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:177,958,887
INFO 2026-06-03 20:42:35 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:184,477,512
INFO 2026-06-03 20:42:36 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:200,899,534
INFO 2026-06-03 20:42:37 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:202,540,067
INFO 2026-06-03 20:42:38 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:204,469,685
INFO 2026-06-03 20:42:39 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:206,931,504
INFO 2026-06-03 20:42:40 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:206,935,556
INFO 2026-06-03 20:42:41 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:206,939,435
INFO 2026-06-03 20:42:42 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:211,313,686
INFO 2026-06-03 20:42:43 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:223,550,961
INFO 2026-06-03 20:42:45 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:226,407,810
INFO 2026-06-03 20:42:46 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:229,518,323
INFO 2026-06-03 20:42:47 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:235,252,748
INFO 2026-06-03 20:42:48 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:246,861,961
INFO 2026-06-03 20:42:49 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr2:10,122,996
INFO 2026-06-03 20:42:50 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr2:20,204,206
INFO 2026-06-03 20:42:51 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr2:21,011,026
INFO 2026-06-03 20:42:52 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr2:24,275,836
INFO 2026-06-03 20:42:53 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr2:27,083,314
INFO 2026-06-03 20:42:54 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr2:28,412,022
INFO 2026-06-03 20:42:55 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,253
INFO 2026-06-03 20:42:57 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-03 20:42:58 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-03 20:42:59 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr2:34,199,210
INFO 2026-06-03 20:43:00 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr2:42,329,831
INFO 2026-06-03 20:43:01 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr2:46,543,023
INFO 2026-06-03 20:43:02 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr2:54,629,540
INFO 2026-06-03 20:43:03 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr2:60,901,004
INFO 2026-06-03 20:43:04 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr2:69,642,901
INFO 2026-06-03 20:43:05 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr2:73,847,677
INFO 2026-06-03 20:43:06 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr2:74,493,013
INFO 2026-06-03 20:43:08 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr2:79,157,288
INFO 2026-06-03 20:43:09 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr2:86,144,317
INFO 2026-06-03 20:43:10 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr2:96,186,793
INFO 2026-06-03 20:43:11 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr2:98,520,137
INFO 2026-06-03 20:43:12 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr2:108,489,936
INFO 2026-06-03 20:43:13 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr2:110,534,866
INFO 2026-06-03 20:43:14 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr2:113,955,623
INFO 2026-06-03 20:43:15 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr2:127,612,297
INFO 2026-06-03 20:43:16 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr2:131,120,947
INFO 2026-06-03 20:43:17 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr2:144,400,014
INFO 2026-06-03 20:43:19 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr2:162,011,800
INFO 2026-06-03 20:43:20 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr2:173,956,187
INFO 2026-06-03 20:43:21 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr2:182,775,323
INFO 2026-06-03 20:43:22 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr2:190,656,121
INFO 2026-06-03 20:43:23 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr2:200,931,378
INFO 2026-06-03 20:43:24 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr2:207,711,959
INFO 2026-06-03 20:43:25 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr2:215,406,261
INFO 2026-06-03 20:43:26 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr2:218,402,143
INFO 2026-06-03 20:43:27 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr2:219,220,839
INFO 2026-06-03 20:43:29 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr2:226,795,519
INFO 2026-06-03 20:43:30 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr2:231,461,561
INFO 2026-06-03 20:43:31 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr2:233,523,229
INFO 2026-06-03 20:43:32 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr2:238,096,788
INFO 2026-06-03 20:43:33 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr2:241,203,357
INFO 2026-06-03 20:43:34 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr3:4,983,100
INFO 2026-06-03 20:43:35 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr3:10,286,728
INFO 2026-06-03 20:43:36 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr3:15,096,007
INFO 2026-06-03 20:43:37 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr3:31,619,675
INFO 2026-06-03 20:43:39 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr3:38,126,171
INFO 2026-06-03 20:43:40 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr3:42,125,526
INFO 2026-06-03 20:43:41 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr3:46,579,959
INFO 2026-06-03 20:43:42 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr3:47,638,724
INFO 2026-06-03 20:43:43 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr3:48,590,505
INFO 2026-06-03 20:43:44 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr3:49,057,842
INFO 2026-06-03 20:43:45 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr3:49,685,261
INFO 2026-06-03 20:43:46 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr3:50,269,326
INFO 2026-06-03 20:43:47 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr3:52,054,249
INFO 2026-06-03 20:43:48 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr3:52,522,915
INFO 2026-06-03 20:43:50 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr3:58,123,132
INFO 2026-06-03 20:43:51 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr3:69,101,848
INFO 2026-06-03 20:43:52 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr3:101,849,761
INFO 2026-06-03 20:43:53 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr3:121,635,770
INFO 2026-06-03 20:43:54 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr3:125,013,588
INFO 2026-06-03 20:43:55 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr3:129,250,685
INFO 2026-06-03 20:43:56 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr3:138,162,363
INFO 2026-06-03 20:43:57 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr3:139,561,230
INFO 2026-06-03 20:43:58 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr3:154,276,220
INFO 2026-06-03 20:44:00 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr3:168,032,542
INFO 2026-06-03 20:44:01 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr3:183,984,700
INFO 2026-06-03 20:44:02 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr3:185,534,928
INFO 2026-06-03 20:44:03 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr3:195,336,932
INFO 2026-06-03 20:44:04 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr3:197,017,202
INFO 2026-06-03 20:44:05 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr4:990,212
INFO 2026-06-03 20:44:06 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr4:1,739,739
INFO 2026-06-03 20:44:07 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr4:2,832,356
INFO 2026-06-03 20:44:08 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr4:6,861,586
INFO 2026-06-03 20:44:10 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr4:16,210,113
INFO 2026-06-03 20:44:11 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr4:37,631,405
INFO 2026-06-03 20:44:12 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr4:48,897,808
INFO 2026-06-03 20:44:13 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr4:67,495,160
INFO 2026-06-03 20:44:14 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr4:76,309,759
INFO 2026-06-03 20:44:15 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr4:86,159,434
INFO 2026-06-03 20:44:16 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr4:99,621,121
INFO 2026-06-03 20:44:17 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr4:119,031,770
INFO 2026-06-03 20:44:18 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr4:142,305,458
INFO 2026-06-03 20:44:19 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr4:155,953,750
INFO 2026-06-03 20:44:21 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr4:186,596,976
INFO 2026-06-03 20:44:22 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr5:524,179
INFO 2026-06-03 20:44:23 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr5:10,261,608
INFO 2026-06-03 20:44:24 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr5:14,581,921
INFO 2026-06-03 20:44:25 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr5:40,681,698
INFO 2026-06-03 20:44:26 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr5:65,664,248
INFO 2026-06-03 20:44:27 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr5:75,029,119
INFO 2026-06-03 20:44:28 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr5:95,464,584
INFO 2026-06-03 20:44:29 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr5:119,071,605
INFO 2026-06-03 20:44:31 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr5:132,608,493
INFO 2026-06-03 20:44:32 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr5:136,029,002
INFO 2026-06-03 20:44:33 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr5:139,387,706
INFO 2026-06-03 20:44:34 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr5:141,375,094
INFO 2026-06-03 20:44:35 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr5:143,300,487
INFO 2026-06-03 20:44:36 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr5:150,132,816
INFO 2026-06-03 20:44:37 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr5:150,405,106
INFO 2026-06-03 20:44:38 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr5:150,649,505
INFO 2026-06-03 20:44:39 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr5:157,049,273
INFO 2026-06-03 20:44:40 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr5:171,392,744
INFO 2026-06-03 20:44:42 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr5:176,575,164
INFO 2026-06-03 20:44:43 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr5:177,304,831
INFO 2026-06-03 20:44:44 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr5:179,616,140
INFO 2026-06-03 20:44:45 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr5:179,822,967
INFO 2026-06-03 20:44:46 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr5:180,992,762
INFO 2026-06-03 20:44:47 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr6:2,959,220
INFO 2026-06-03 20:44:48 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr6:7,248,740
INFO 2026-06-03 20:44:49 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr6:16,306,583
INFO 2026-06-03 20:44:50 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr6:26,056,304
INFO 2026-06-03 20:44:51 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr6:27,147,151
INFO 2026-06-03 20:44:52 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr6:29,889,433
INFO 2026-06-03 20:44:54 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr6:30,492,564
INFO 2026-06-03 20:44:55 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr6:30,916,923
INFO 2026-06-03 20:44:56 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr6:31,530,800
INFO 2026-06-03 20:44:57 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr6:31,687,856
INFO 2026-06-03 20:44:58 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr6:31,883,866
INFO 2026-06-03 20:44:59 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr6:32,049,419
INFO 2026-06-03 20:45:00 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr6:32,580,755
INFO 2026-06-03 20:45:01 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr6:33,263,488
INFO 2026-06-03 20:45:02 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr6:33,640,498
INFO 2026-06-03 20:45:03 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr6:35,452,636
INFO 2026-06-03 20:45:05 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr6:39,907,003
INFO 2026-06-03 20:45:06 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr6:41,930,164
INFO 2026-06-03 20:45:07 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr6:43,159,881
INFO 2026-06-03 20:45:08 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr6:44,232,019
INFO 2026-06-03 20:45:09 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr6:53,065,692
INFO 2026-06-03 20:45:10 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr6:75,102,009
INFO 2026-06-03 20:45:11 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr6:89,081,025
INFO 2026-06-03 20:45:12 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr6:107,458,979
INFO 2026-06-03 20:45:13 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr6:112,191,828
INFO 2026-06-03 20:45:14 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr6:128,082,451
INFO 2026-06-03 20:45:16 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr6:138,092,054
INFO 2026-06-03 20:45:17 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr6:145,919,376
INFO 2026-06-03 20:45:18 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr6:157,110,487
INFO 2026-06-03 20:45:19 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr6:158,783,606
INFO 2026-06-03 20:45:20 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr6:167,827,157
INFO 2026-06-03 20:45:21 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr7:899,296
INFO 2026-06-03 20:45:22 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr7:2,432,698
INFO 2026-06-03 20:45:23 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr7:5,362,701
INFO 2026-06-03 20:45:24 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,401
INFO 2026-06-03 20:45:25 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr7:6,653,214
INFO 2026-06-03 20:45:27 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr7:26,197,633
INFO 2026-06-03 20:45:28 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr7:39,997,635
INFO 2026-06-03 20:45:29 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr7:44,539,780
INFO 2026-06-03 20:45:30 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr7:47,439,504
INFO 2026-06-03 20:45:31 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr7:65,979,874
INFO 2026-06-03 20:45:32 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr7:73,259,324
INFO 2026-06-03 20:45:33 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr7:74,338,544
INFO 2026-06-03 20:45:34 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr7:75,422,559
INFO 2026-06-03 20:45:35 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr7:76,511,772
INFO 2026-06-03 20:45:36 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr7:91,941,084
INFO 2026-06-03 20:45:38 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr7:92,095,024
INFO 2026-06-03 20:45:39 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr7:92,579,317
INFO 2026-06-03 20:45:40 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr7:98,293,500
INFO 2026-06-03 20:45:41 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr7:99,668,347
INFO 2026-06-03 20:45:42 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr7:100,353,008
INFO 2026-06-03 20:45:43 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr7:100,861,498
INFO 2026-06-03 20:45:44 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr7:100,956,605
INFO 2026-06-03 20:45:45 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,648
INFO 2026-06-03 20:45:46 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr7:101,038,386
INFO 2026-06-03 20:45:47 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr7:101,240,157
INFO 2026-06-03 20:45:48 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr7:102,555,907
INFO 2026-06-03 20:45:49 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr7:102,688,204
INFO 2026-06-03 20:45:51 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr7:112,450,590
INFO 2026-06-03 20:45:52 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr7:127,704,907
INFO 2026-06-03 20:45:53 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr7:129,711,534
INFO 2026-06-03 20:45:54 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr7:138,861,367
INFO 2026-06-03 20:45:55 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr7:142,050,242
INFO 2026-06-03 20:45:56 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr7:143,383,052
INFO 2026-06-03 20:45:57 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr7:149,147,615
INFO 2026-06-03 20:45:58 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr7:150,857,059
INFO 2026-06-03 20:45:59 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr7:151,237,923
INFO 2026-06-03 20:46:00 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr7:158,760,113
INFO 2026-06-03 20:46:01 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr8:11,845,660
INFO 2026-06-03 20:46:03 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr8:22,417,723
INFO 2026-06-03 20:46:04 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr8:25,392,844
INFO 2026-06-03 20:46:05 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr8:32,548,737
INFO 2026-06-03 20:46:06 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr8:38,429,707
INFO 2026-06-03 20:46:07 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr8:47,840,061
INFO 2026-06-03 20:46:08 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr8:67,301,345
INFO 2026-06-03 20:46:09 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr8:90,645,777
INFO 2026-06-03 20:46:10 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr8:100,703,334
INFO 2026-06-03 20:46:11 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr8:119,070,550
INFO 2026-06-03 20:46:13 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr8:133,032,121
INFO 2026-06-03 20:46:14 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr8:143,538,282
INFO 2026-06-03 20:46:15 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr8:143,728,351
INFO 2026-06-03 20:46:16 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,300
INFO 2026-06-03 20:46:17 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 0s. Last read position: chr8:143,858,605
INFO 2026-06-03 20:46:18 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,031
INFO 2026-06-03 20:46:19 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,590
INFO 2026-06-03 20:46:20 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 0s. Last read position: chr8:143,860,019
INFO 2026-06-03 20:46:21 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,585
INFO 2026-06-03 20:46:22 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,884
INFO 2026-06-03 20:46:23 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,317
INFO 2026-06-03 20:46:24 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 0s. Last read position: chr8:143,861,620
INFO 2026-06-03 20:46:25 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,010
INFO 2026-06-03 20:46:26 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,378
INFO 2026-06-03 20:46:27 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,824
INFO 2026-06-03 20:46:28 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,161
INFO 2026-06-03 20:46:29 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,586
INFO 2026-06-03 20:46:30 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,877
INFO 2026-06-03 20:46:31 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,484
INFO 2026-06-03 20:46:32 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,843
INFO 2026-06-03 20:46:33 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,389
INFO 2026-06-03 20:46:34 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,702
INFO 2026-06-03 20:46:35 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 0s. Last read position: chr8:143,866,140
INFO 2026-06-03 20:46:36 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 0s. Last read position: chr8:143,866,434
INFO 2026-06-03 20:46:37 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr8:143,916,508
INFO 2026-06-03 20:46:38 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr8:143,923,992
INFO 2026-06-03 20:46:39 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr8:143,985,930
INFO 2026-06-03 20:46:40 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr8:144,317,360
INFO 2026-06-03 20:46:41 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr8:144,416,634
INFO 2026-06-03 20:46:43 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr8:145,052,849
INFO 2026-06-03 20:46:44 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr9:14,306,989
INFO 2026-06-03 20:46:45 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr9:33,318,912
INFO 2026-06-03 20:46:46 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr9:35,609,073
INFO 2026-06-03 20:46:47 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr9:40,099,290
INFO 2026-06-03 20:46:48 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr9:75,891,235
INFO 2026-06-03 20:46:49 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr9:86,077,522
INFO 2026-06-03 20:46:50 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr9:93,515,741
INFO 2026-06-03 20:46:51 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr9:99,003,520
INFO 2026-06-03 20:46:52 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr9:101,430,828
INFO 2026-06-03 20:46:54 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr9:113,183,822
INFO 2026-06-03 20:46:55 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr9:121,138,614
INFO 2026-06-03 20:46:56 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr9:125,915,684
INFO 2026-06-03 20:46:57 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr9:128,224,256
INFO 2026-06-03 20:46:58 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr9:128,908,762
INFO 2026-06-03 20:46:59 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr9:130,883,987
INFO 2026-06-03 20:47:00 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr9:133,109,643
INFO 2026-06-03 20:47:01 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr9:135,486,228
INFO 2026-06-03 20:47:02 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr9:136,668,166
INFO 2026-06-03 20:47:04 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr9:137,175,300
INFO 2026-06-03 20:47:05 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr9:137,754,243
INFO 2026-06-03 20:47:06 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr10:7,779,003
INFO 2026-06-03 20:47:07 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr10:20,787,209
INFO 2026-06-03 20:47:08 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr10:32,033,919
INFO 2026-06-03 20:47:09 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr10:45,826,592
INFO 2026-06-03 20:47:10 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr10:47,502,732
INFO 2026-06-03 20:47:11 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr10:59,906,148
INFO 2026-06-03 20:47:12 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr10:70,404,161
INFO 2026-06-03 20:47:13 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr10:73,800,009
INFO 2026-06-03 20:47:15 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr10:79,850,503
INFO 2026-06-03 20:47:16 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr10:89,306,537
INFO 2026-06-03 20:47:17 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr10:95,606,854
INFO 2026-06-03 20:47:18 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr10:99,611,044
INFO 2026-06-03 20:47:19 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr10:102,133,076
INFO 2026-06-03 20:47:20 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr10:104,064,587
INFO 2026-06-03 20:47:21 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr10:114,465,751
INFO 2026-06-03 20:47:22 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr10:122,087,504
INFO 2026-06-03 20:47:23 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr10:122,579,616
INFO 2026-06-03 20:47:25 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr10:122,582,823
INFO 2026-06-03 20:47:26 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr10:122,593,566
INFO 2026-06-03 20:47:27 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr10:122,598,969
INFO 2026-06-03 20:47:28 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr10:122,602,011
INFO 2026-06-03 20:47:29 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr10:122,605,854
INFO 2026-06-03 20:47:30 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr10:122,606,106
INFO 2026-06-03 20:47:31 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr10:122,610,037
INFO 2026-06-03 20:47:32 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr10:122,613,988
INFO 2026-06-03 20:47:33 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr10:122,618,080
INFO 2026-06-03 20:47:34 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr10:122,631,074
INFO 2026-06-03 20:47:35 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr10:122,643,399
INFO 2026-06-03 20:47:36 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr10:133,273,951
INFO 2026-06-03 20:47:37 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr11:289,834
INFO 2026-06-03 20:47:38 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr11:421,141
INFO 2026-06-03 20:47:39 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr11:617,529
INFO 2026-06-03 20:47:41 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr11:620,352
INFO 2026-06-03 20:47:42 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr11:812,593
INFO 2026-06-03 20:47:43 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr11:1,016,025
INFO 2026-06-03 20:47:44 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr11:1,016,764
INFO 2026-06-03 20:47:45 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr11:1,017,403
INFO 2026-06-03 20:47:46 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr11:1,018,407
INFO 2026-06-03 20:47:47 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr11:1,025,330
INFO 2026-06-03 20:47:48 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr11:1,031,669
INFO 2026-06-03 20:47:49 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr11:1,238,920
INFO 2026-06-03 20:47:50 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr11:1,249,323
INFO 2026-06-03 20:47:51 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr11:2,302,875
INFO 2026-06-03 20:47:53 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr11:5,665,061
INFO 2026-06-03 20:47:54 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr11:7,642,409
INFO 2026-06-03 20:47:55 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr11:12,764,286
INFO 2026-06-03 20:47:56 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr11:18,403,756
INFO 2026-06-03 20:47:57 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr11:35,663,739
INFO 2026-06-03 20:47:58 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr11:46,379,840
INFO 2026-06-03 20:47:59 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr11:47,579,133
INFO 2026-06-03 20:48:00 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr11:57,699,973
INFO 2026-06-03 20:48:01 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr11:60,900,894
INFO 2026-06-03 20:48:03 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr11:62,128,179
INFO 2026-06-03 20:48:04 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr11:62,533,655
INFO 2026-06-03 20:48:05 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr11:62,782,183
INFO 2026-06-03 20:48:06 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr11:64,234,839
INFO 2026-06-03 20:48:07 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr11:64,318,351
INFO 2026-06-03 20:48:08 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr11:64,910,926
INFO 2026-06-03 20:48:09 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr11:65,532,728
INFO 2026-06-03 20:48:10 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr11:65,654,626
INFO 2026-06-03 20:48:11 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr11:66,068,270
INFO 2026-06-03 20:48:12 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr11:66,871,709
INFO 2026-06-03 20:48:14 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr11:67,499,796
INFO 2026-06-03 20:48:15 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr11:68,363,883
INFO 2026-06-03 20:48:16 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr11:70,409,847
INFO 2026-06-03 20:48:17 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr11:72,023,065
INFO 2026-06-03 20:48:18 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr11:74,848,178
INFO 2026-06-03 20:48:19 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr11:77,691,142
INFO 2026-06-03 20:48:20 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr11:94,545,437
INFO 2026-06-03 20:48:21 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr11:111,602,490
INFO 2026-06-03 20:48:22 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr11:116,821,562
INFO 2026-06-03 20:48:23 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr11:117,224,090
INFO 2026-06-03 20:48:25 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr11:118,663,384
INFO 2026-06-03 20:48:26 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr11:119,727,787
INFO 2026-06-03 20:48:27 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr11:124,881,266
INFO 2026-06-03 20:48:28 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr11:130,190,546
INFO 2026-06-03 20:48:29 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr12:2,795,076
INFO 2026-06-03 20:48:30 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr12:6,457,695
INFO 2026-06-03 20:48:31 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr12:6,937,359
INFO 2026-06-03 20:48:32 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr12:9,312,894
INFO 2026-06-03 20:48:33 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr12:16,357,633
INFO 2026-06-03 20:48:35 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr12:31,479,648
INFO 2026-06-03 20:48:36 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr12:47,865,147
INFO 2026-06-03 20:48:37 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr12:49,050,351
INFO 2026-06-03 20:48:38 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr12:50,085,414
INFO 2026-06-03 20:48:39 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr12:52,898,714
INFO 2026-06-03 20:48:40 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr12:53,295,585
INFO 2026-06-03 20:48:41 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr12:54,283,948
INFO 2026-06-03 20:48:42 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr12:56,133,433
INFO 2026-06-03 20:48:43 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr12:56,604,660
INFO 2026-06-03 20:48:44 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr12:57,096,673
INFO 2026-06-03 20:48:46 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr12:57,158,584
INFO 2026-06-03 20:48:47 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr12:57,283,891
INFO 2026-06-03 20:48:48 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr12:64,759,280
INFO 2026-06-03 20:48:49 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr12:71,157,674
INFO 2026-06-03 20:48:50 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr12:98,593,978
INFO 2026-06-03 20:48:51 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr12:108,788,123
INFO 2026-06-03 20:48:52 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr12:112,022,244
INFO 2026-06-03 20:48:53 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr12:114,676,367
INFO 2026-06-03 20:48:54 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr12:120,215,298
INFO 2026-06-03 20:48:56 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr12:121,822,963
INFO 2026-06-03 20:48:57 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr12:124,311,849
INFO 2026-06-03 20:48:58 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr12:131,986,520
INFO 2026-06-03 20:48:59 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr12:133,203,581
INFO 2026-06-03 20:49:00 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr13:24,223,750
INFO 2026-06-03 20:49:01 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr13:27,968,810
INFO 2026-06-03 20:49:02 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 1s. Last read position: chr13:39,038,675
INFO 2026-06-03 20:49:03 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 1s. Last read position: chr13:45,340,101
INFO 2026-06-03 20:49:04 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr13:51,934,997
INFO 2026-06-03 20:49:05 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 1s. Last read position: chr13:73,062,539
INFO 2026-06-03 20:49:07 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr13:80,337,561
INFO 2026-06-03 20:49:08 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr13:99,517,631
INFO 2026-06-03 20:49:09 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 1s. Last read position: chr13:109,785,704
INFO 2026-06-03 20:49:10 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr13:112,690,357
INFO 2026-06-03 20:49:11 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 1s. Last read position: chr13:113,795,187
INFO 2026-06-03 20:49:12 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr14:20,801,698
INFO 2026-06-03 20:49:13 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 1s. Last read position: chr14:22,845,877
INFO 2026-06-03 20:49:14 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 1s. Last read position: chr14:23,323,036
INFO 2026-06-03 20:49:15 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 1s. Last read position: chr14:24,145,432
INFO 2026-06-03 20:49:16 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 1s. Last read position: chr14:24,415,153
INFO 2026-06-03 20:49:18 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 1s. Last read position: chr14:38,209,889
INFO 2026-06-03 20:49:19 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 1s. Last read position: chr14:49,862,670
INFO 2026-06-03 20:49:20 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 1s. Last read position: chr14:57,208,649
INFO 2026-06-03 20:49:21 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 1s. Last read position: chr14:64,741,203
INFO 2026-06-03 20:49:22 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 1s. Last read position: chr14:68,921,060
INFO 2026-06-03 20:49:23 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 1s. Last read position: chr14:73,569,405
INFO 2026-06-03 20:49:24 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 1s. Last read position: chr14:75,437,897
INFO 2026-06-03 20:49:25 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 1s. Last read position: chr14:91,170,023
INFO 2026-06-03 20:49:26 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 1s. Last read position: chr14:94,116,456
INFO 2026-06-03 20:49:27 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 1s. Last read position: chr14:101,836,247
INFO 2026-06-03 20:49:29 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 1s. Last read position: chr14:102,928,456
INFO 2026-06-03 20:49:30 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 1s. Last read position: chr14:104,654,746
INFO 2026-06-03 20:49:31 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 1s. Last read position: chr14:104,887,064
INFO 2026-06-03 20:49:32 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 1s. Last read position: chr14:105,469,909
INFO 2026-06-03 20:49:33 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,352
INFO 2026-06-03 20:49:34 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,163
INFO 2026-06-03 20:49:35 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 1s. Last read position: chr14:105,928,733
INFO 2026-06-03 20:49:36 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 1s. Last read position: chr15:30,045,317
INFO 2026-06-03 20:49:37 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 1s. Last read position: chr15:34,383,744
INFO 2026-06-03 20:49:38 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 1s. Last read position: chr15:40,356,135
INFO 2026-06-03 20:49:39 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 1s. Last read position: chr15:41,736,256
INFO 2026-06-03 20:49:41 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 1s. Last read position: chr15:43,529,960
INFO 2026-06-03 20:49:42 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 1s. Last read position: chr15:44,289,136
INFO 2026-06-03 20:49:43 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 1s. Last read position: chr15:50,286,056
INFO 2026-06-03 20:49:44 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 1s. Last read position: chr15:59,372,561
INFO 2026-06-03 20:49:45 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 1s. Last read position: chr15:64,138,068
INFO 2026-06-03 20:49:46 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 1s. Last read position: chr15:68,351,327
INFO 2026-06-03 20:49:47 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 1s. Last read position: chr15:73,570,308
INFO 2026-06-03 20:49:48 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 1s. Last read position: chr15:74,937,928
INFO 2026-06-03 20:49:49 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 1s. Last read position: chr15:77,056,169
INFO 2026-06-03 20:49:51 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 1s. Last read position: chr15:84,240,062
INFO 2026-06-03 20:49:52 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr15:89,188,254
INFO 2026-06-03 20:49:53 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 1s. Last read position: chr15:89,799,476
INFO 2026-06-03 20:49:54 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 1s. Last read position: chr15:89,805,358
INFO 2026-06-03 20:49:55 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr15:90,440,543
INFO 2026-06-03 20:49:56 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr15:101,046,075
INFO 2026-06-03 20:49:57 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 1s. Last read position: chr16:376,305
INFO 2026-06-03 20:49:58 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr16:670,306
INFO 2026-06-03 20:49:59 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 1s. Last read position: chr16:1,390,632
INFO 2026-06-03 20:50:00 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr16:1,964,356
INFO 2026-06-03 20:50:02 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 1s. Last read position: chr16:2,116,003
INFO 2026-06-03 20:50:03 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 1s. Last read position: chr16:2,761,570
INFO 2026-06-03 20:50:04 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr16:2,769,221
INFO 2026-06-03 20:50:05 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr16:3,563,995
INFO 2026-06-03 20:50:06 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr16:4,688,795
INFO 2026-06-03 20:50:07 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr16:10,908,071
INFO 2026-06-03 20:50:08 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr16:14,911,792
INFO 2026-06-03 20:50:09 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr16:15,154,576
INFO 2026-06-03 20:50:10 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr16:16,317,916
INFO 2026-06-03 20:50:11 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr16:18,347,303
INFO 2026-06-03 20:50:12 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr16:18,783,090
INFO 2026-06-03 20:50:13 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr16:21,403,396
INFO 2026-06-03 20:50:15 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr16:21,835,471
INFO 2026-06-03 20:50:16 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr16:22,513,784
INFO 2026-06-03 20:50:17 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr16:23,535,054
INFO 2026-06-03 20:50:18 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr16:28,176,032
INFO 2026-06-03 20:50:19 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr16:28,835,629
INFO 2026-06-03 20:50:20 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr16:29,454,172
INFO 2026-06-03 20:50:21 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr16:29,694,932
INFO 2026-06-03 20:50:22 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr16:29,912,030
INFO 2026-06-03 20:50:23 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr16:30,194,207
INFO 2026-06-03 20:50:24 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr16:30,395,785
INFO 2026-06-03 20:50:25 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr16:30,737,730
INFO 2026-06-03 20:50:26 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr16:31,182,612
INFO 2026-06-03 20:50:28 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr16:48,348,166
INFO 2026-06-03 20:50:29 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr16:56,609,267
INFO 2026-06-03 20:50:30 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr16:57,661,794
INFO 2026-06-03 20:50:31 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr16:66,938,182
INFO 2026-06-03 20:50:32 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr16:67,230,616
INFO 2026-06-03 20:50:33 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr16:68,324,797
INFO 2026-06-03 20:50:34 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr16:69,757,295
INFO 2026-06-03 20:50:35 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr16:71,626,429
INFO 2026-06-03 20:50:36 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr16:75,235,377
INFO 2026-06-03 20:50:37 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr16:81,678,546
INFO 2026-06-03 20:50:39 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr16:85,665,991
INFO 2026-06-03 20:50:40 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr16:88,643,392
INFO 2026-06-03 20:50:41 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr16:89,279,793
INFO 2026-06-03 20:50:42 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr16:89,638,106
INFO 2026-06-03 20:50:43 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr17:746,104
INFO 2026-06-03 20:50:44 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr17:1,677,039
INFO 2026-06-03 20:50:45 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr17:3,621,252
INFO 2026-06-03 20:50:46 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr17:4,673,093
INFO 2026-06-03 20:50:47 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr17:5,022,571
INFO 2026-06-03 20:50:49 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr17:7,224,848
INFO 2026-06-03 20:50:50 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr17:7,513,778
INFO 2026-06-03 20:50:51 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr17:8,176,205
INFO 2026-06-03 20:50:52 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr17:16,325,891
INFO 2026-06-03 20:50:53 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr17:17,819,539
INFO 2026-06-03 20:50:54 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr17:21,018,017
INFO 2026-06-03 20:50:55 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr17:28,611,182
INFO 2026-06-03 20:50:56 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr17:29,293,874
INFO 2026-06-03 20:50:57 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr17:32,940,817
INFO 2026-06-03 20:50:59 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr17:36,592,027
INFO 2026-06-03 20:51:00 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr17:38,352,248
INFO 2026-06-03 20:51:01 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr17:39,653,657
INFO 2026-06-03 20:51:02 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr17:39,723,549
INFO 2026-06-03 20:51:03 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr17:40,178,090
INFO 2026-06-03 20:51:04 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr17:41,767,465
INFO 2026-06-03 20:51:05 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr17:42,582,731
INFO 2026-06-03 20:51:06 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr17:44,093,387
INFO 2026-06-03 20:51:07 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr17:45,150,145
INFO 2026-06-03 20:51:08 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr17:47,605,387
INFO 2026-06-03 20:51:09 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr17:48,933,318
INFO 2026-06-03 20:51:11 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,378
INFO 2026-06-03 20:51:12 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,642
INFO 2026-06-03 20:51:13 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr17:50,669,187
INFO 2026-06-03 20:51:14 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr17:57,627,228
INFO 2026-06-03 20:51:15 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr17:59,682,375
INFO 2026-06-03 20:51:16 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr17:63,497,313
INFO 2026-06-03 20:51:17 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr17:65,537,786
INFO 2026-06-03 20:51:18 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr17:73,232,116
INFO 2026-06-03 20:51:20 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr17:75,242,356
INFO 2026-06-03 20:51:21 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr17:75,614,259
INFO 2026-06-03 20:51:22 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr17:75,740,796
INFO 2026-06-03 20:51:23 SinglePassSamProgram Processed 532,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr17:76,009,190
INFO 2026-06-03 20:51:24 SinglePassSamProgram Processed 533,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr17:77,402,495
INFO 2026-06-03 20:51:25 SinglePassSamProgram Processed 534,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr17:78,972,968
INFO 2026-06-03 20:51:26 SinglePassSamProgram Processed 535,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr17:80,334,205
INFO 2026-06-03 20:51:27 SinglePassSamProgram Processed 536,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr17:81,192,317
INFO 2026-06-03 20:51:28 SinglePassSamProgram Processed 537,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr17:81,701,510
INFO 2026-06-03 20:51:29 SinglePassSamProgram Processed 538,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr17:81,922,907
INFO 2026-06-03 20:51:31 SinglePassSamProgram Processed 539,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr17:82,201,709
INFO 2026-06-03 20:51:32 SinglePassSamProgram Processed 540,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr18:3,173,953
INFO 2026-06-03 20:51:33 SinglePassSamProgram Processed 541,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr18:21,042,205
INFO 2026-06-03 20:51:34 SinglePassSamProgram Processed 542,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr18:32,204,265
INFO 2026-06-03 20:51:35 SinglePassSamProgram Processed 543,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr18:49,826,577
INFO 2026-06-03 20:51:36 SinglePassSamProgram Processed 544,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr18:58,385,549
INFO 2026-06-03 20:51:37 SinglePassSamProgram Processed 545,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr18:75,063,740
INFO 2026-06-03 20:51:38 SinglePassSamProgram Processed 546,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr19:581,572
INFO 2026-06-03 20:51:39 SinglePassSamProgram Processed 547,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr19:871,216
INFO 2026-06-03 20:51:41 SinglePassSamProgram Processed 548,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr19:1,221,295
INFO 2026-06-03 20:51:42 SinglePassSamProgram Processed 549,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr19:1,496,315
INFO 2026-06-03 20:51:43 SinglePassSamProgram Processed 550,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr19:2,117,222
INFO 2026-06-03 20:51:44 SinglePassSamProgram Processed 551,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr19:2,759,259
INFO 2026-06-03 20:51:45 SinglePassSamProgram Processed 552,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr19:3,738,595
INFO 2026-06-03 20:51:46 SinglePassSamProgram Processed 553,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr19:4,409,465
INFO 2026-06-03 20:51:47 SinglePassSamProgram Processed 554,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr19:5,667,144
INFO 2026-06-03 20:51:48 SinglePassSamProgram Processed 555,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr19:6,417,065
INFO 2026-06-03 20:51:49 SinglePassSamProgram Processed 556,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr19:7,605,272
INFO 2026-06-03 20:51:50 SinglePassSamProgram Processed 557,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr19:8,390,398
INFO 2026-06-03 20:51:52 SinglePassSamProgram Processed 558,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr19:10,317,576
INFO 2026-06-03 20:51:53 SinglePassSamProgram Processed 559,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr19:10,830,244
INFO 2026-06-03 20:51:54 SinglePassSamProgram Processed 560,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr19:11,447,481
INFO 2026-06-03 20:51:55 SinglePassSamProgram Processed 561,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr19:12,896,328
INFO 2026-06-03 20:51:56 SinglePassSamProgram Processed 562,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr19:13,993,679
INFO 2026-06-03 20:51:57 SinglePassSamProgram Processed 563,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr19:15,177,935
INFO 2026-06-03 20:51:58 SinglePassSamProgram Processed 564,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr19:15,696,954
INFO 2026-06-03 20:51:59 SinglePassSamProgram Processed 565,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr19:17,245,029
INFO 2026-06-03 20:52:00 SinglePassSamProgram Processed 566,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr19:18,150,474
INFO 2026-06-03 20:52:02 SinglePassSamProgram Processed 567,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr19:18,903,340
INFO 2026-06-03 20:52:03 SinglePassSamProgram Processed 568,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr19:21,142,031
INFO 2026-06-03 20:52:04 SinglePassSamProgram Processed 569,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr19:34,677,734
INFO 2026-06-03 20:52:05 SinglePassSamProgram Processed 570,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr19:35,733,005
INFO 2026-06-03 20:52:06 SinglePassSamProgram Processed 571,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr19:38,287,922
INFO 2026-06-03 20:52:07 SinglePassSamProgram Processed 572,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr19:38,808,912
INFO 2026-06-03 20:52:08 SinglePassSamProgram Processed 573,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr19:39,825,791
INFO 2026-06-03 20:52:09 SinglePassSamProgram Processed 574,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr19:39,891,871
INFO 2026-06-03 20:52:10 SinglePassSamProgram Processed 575,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr19:39,943,458
INFO 2026-06-03 20:52:11 SinglePassSamProgram Processed 576,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr19:40,627,246
INFO 2026-06-03 20:52:13 SinglePassSamProgram Processed 577,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr19:41,715,102
INFO 2026-06-03 20:52:14 SinglePassSamProgram Processed 578,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr19:42,272,152
INFO 2026-06-03 20:52:15 SinglePassSamProgram Processed 579,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr19:42,522,092
INFO 2026-06-03 20:52:16 SinglePassSamProgram Processed 580,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr19:44,977,359
INFO 2026-06-03 20:52:17 SinglePassSamProgram Processed 581,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr19:45,778,138
INFO 2026-06-03 20:52:18 SinglePassSamProgram Processed 582,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr19:47,069,165
INFO 2026-06-03 20:52:19 SinglePassSamProgram Processed 583,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr19:48,473,305
INFO 2026-06-03 20:52:20 SinglePassSamProgram Processed 584,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr19:48,919,087
INFO 2026-06-03 20:52:21 SinglePassSamProgram Processed 585,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr19:49,466,161
INFO 2026-06-03 20:52:22 SinglePassSamProgram Processed 586,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr19:49,621,540
INFO 2026-06-03 20:52:23 SinglePassSamProgram Processed 587,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr19:49,908,972
INFO 2026-06-03 20:52:25 SinglePassSamProgram Processed 588,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr19:50,289,537
INFO 2026-06-03 20:52:26 SinglePassSamProgram Processed 589,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr19:52,406,005
INFO 2026-06-03 20:52:27 SinglePassSamProgram Processed 590,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr19:54,452,669
INFO 2026-06-03 20:52:28 SinglePassSamProgram Processed 591,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr19:55,203,847
INFO 2026-06-03 20:52:29 SinglePassSamProgram Processed 592,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr19:55,663,677
INFO 2026-06-03 20:52:30 SinglePassSamProgram Processed 593,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr19:58,068,272
INFO 2026-06-03 20:52:31 SinglePassSamProgram Processed 594,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr20:1,135,263
INFO 2026-06-03 20:52:32 SinglePassSamProgram Processed 595,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr20:3,576,890
INFO 2026-06-03 20:52:33 SinglePassSamProgram Processed 596,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr20:10,672,822
INFO 2026-06-03 20:52:35 SinglePassSamProgram Processed 597,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr20:19,960,657
INFO 2026-06-03 20:52:36 SinglePassSamProgram Processed 598,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr20:25,458,491
INFO 2026-06-03 20:52:37 SinglePassSamProgram Processed 599,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr20:34,280,938
INFO 2026-06-03 20:52:38 SinglePassSamProgram Processed 600,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr20:35,632,344
INFO 2026-06-03 20:52:39 SinglePassSamProgram Processed 601,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr20:38,033,947
INFO 2026-06-03 20:52:40 SinglePassSamProgram Processed 602,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr20:44,160,055
INFO 2026-06-03 20:52:41 SinglePassSamProgram Processed 603,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr20:45,834,211
INFO 2026-06-03 20:52:42 SinglePassSamProgram Processed 604,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr20:49,247,876
INFO 2026-06-03 20:52:43 SinglePassSamProgram Processed 605,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr20:57,407,549
INFO 2026-06-03 20:52:44 SinglePassSamProgram Processed 606,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr20:62,133,356
INFO 2026-06-03 20:52:46 SinglePassSamProgram Processed 607,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr20:62,813,516
INFO 2026-06-03 20:52:47 SinglePassSamProgram Processed 608,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr20:63,691,745
INFO 2026-06-03 20:52:48 SinglePassSamProgram Processed 609,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr21:5,163,565
INFO 2026-06-03 20:52:49 SinglePassSamProgram Processed 610,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,707
INFO 2026-06-03 20:52:50 SinglePassSamProgram Processed 611,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr21:8,400,366
INFO 2026-06-03 20:52:51 SinglePassSamProgram Processed 612,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,601
INFO 2026-06-03 20:52:52 SinglePassSamProgram Processed 613,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr21:26,112,007
INFO 2026-06-03 20:52:53 SinglePassSamProgram Processed 614,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr21:33,755,341
INFO 2026-06-03 20:52:54 SinglePassSamProgram Processed 615,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr21:39,264,735
INFO 2026-06-03 20:52:55 SinglePassSamProgram Processed 616,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr21:42,818,462
INFO 2026-06-03 20:52:56 SinglePassSamProgram Processed 617,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr21:44,573,827
INFO 2026-06-03 20:52:58 SinglePassSamProgram Processed 618,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr21:46,002,651
INFO 2026-06-03 20:52:59 SinglePassSamProgram Processed 619,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr22:17,812,544
INFO 2026-06-03 20:53:00 SinglePassSamProgram Processed 620,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr22:20,116,514
INFO 2026-06-03 20:53:01 SinglePassSamProgram Processed 621,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr22:21,957,294
INFO 2026-06-03 20:53:02 SinglePassSamProgram Processed 622,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr22:23,882,569
INFO 2026-06-03 20:53:03 SinglePassSamProgram Processed 623,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr22:25,170,827
INFO 2026-06-03 20:53:04 SinglePassSamProgram Processed 624,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr22:29,296,348
INFO 2026-06-03 20:53:05 SinglePassSamProgram Processed 625,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr22:30,369,498
INFO 2026-06-03 20:53:06 SinglePassSamProgram Processed 626,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr22:31,804,175
INFO 2026-06-03 20:53:07 SinglePassSamProgram Processed 627,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr22:36,141,215
INFO 2026-06-03 20:53:09 SinglePassSamProgram Processed 628,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr22:36,517,346
INFO 2026-06-03 20:53:10 SinglePassSamProgram Processed 629,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr22:37,650,652
INFO 2026-06-03 20:53:11 SinglePassSamProgram Processed 630,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr22:38,300,914
INFO 2026-06-03 20:53:12 SinglePassSamProgram Processed 631,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr22:39,522,423
INFO 2026-06-03 20:53:13 SinglePassSamProgram Processed 632,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr22:41,437,086
INFO 2026-06-03 20:53:14 SinglePassSamProgram Processed 633,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr22:42,592,001
INFO 2026-06-03 20:53:15 SinglePassSamProgram Processed 634,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr22:46,356,046
INFO 2026-06-03 20:53:16 SinglePassSamProgram Processed 635,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr22:50,240,250
INFO 2026-06-03 20:53:17 SinglePassSamProgram Processed 636,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr22:50,459,581
INFO 2026-06-03 20:53:18 SinglePassSamProgram Processed 637,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr22:50,627,351
INFO 2026-06-03 20:53:20 SinglePassSamProgram Processed 638,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chrX:11,760,474
INFO 2026-06-03 20:53:21 SinglePassSamProgram Processed 639,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chrX:24,788,479
INFO 2026-06-03 20:53:22 SinglePassSamProgram Processed 640,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chrX:43,744,925
INFO 2026-06-03 20:53:23 SinglePassSamProgram Processed 641,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chrX:48,686,090
INFO 2026-06-03 20:53:24 SinglePassSamProgram Processed 642,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chrX:51,901,765
INFO 2026-06-03 20:53:25 SinglePassSamProgram Processed 643,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chrX:54,811,290
INFO 2026-06-03 20:53:26 SinglePassSamProgram Processed 644,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chrX:71,297,400
INFO 2026-06-03 20:53:27 SinglePassSamProgram Processed 645,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chrX:85,282,275
INFO 2026-06-03 20:53:28 SinglePassSamProgram Processed 646,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chrX:118,393,179
INFO 2026-06-03 20:53:29 SinglePassSamProgram Processed 647,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chrX:130,074,129
INFO 2026-06-03 20:53:31 SinglePassSamProgram Processed 648,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chrX:153,736,174
INFO 2026-06-03 20:53:32 SinglePassSamProgram Processed 649,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chrX:154,359,044
INFO 2026-06-03 20:53:33 SinglePassSamProgram Processed 650,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chrX:154,768,327
INFO 2026-06-03 20:53:34 SinglePassSamProgram Processed 651,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,121
INFO 2026-06-03 20:53:35 SinglePassSamProgram Processed 652,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: GL000220.1:157,956
INFO 2026-06-03 20:53:36 SinglePassSamProgram Processed 653,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: KI270733.1:128,168
INFO 2026-06-03 20:53:37 SinglePassSamProgram Processed 654,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: KI270733.1:135,037
INFO 2026-06-03 20:53:38 SinglePassSamProgram Processed 655,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,731
INFO 2026-06-03 20:53:38 RExecutor Executing R script via command: Rscript /tmp/script1680339269989811348.R /tmp/nxf.XXXXGhH7VJ/aih-tih-sc-184b05-R1_A23YTGFLT4_1_collectinsertsize.txt /tmp/nxf.XXXXGhH7VJ/aih-tih-sc-184b05-R1_A23YTGFLT4_1_collectinsertsize.pdf aih-tih-sc-184b05-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
ERROR 2026-06-03 20:53:38 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 20:53:39 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 20:53:39 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-03 20:53:39 ProcessExecutor During startup - Warning messages:
ERROR 2026-06-03 20:53:39 ProcessExecutor 1: Setting LC_CTYPE failed, using "C"
ERROR 2026-06-03 20:53:39 ProcessExecutor 2: Setting LC_COLLATE failed, using "C"
ERROR 2026-06-03 20:53:39 ProcessExecutor 3: Setting LC_TIME failed, using "C"
ERROR 2026-06-03 20:53:39 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C"
ERROR 2026-06-03 20:53:39 ProcessExecutor 5: Setting LC_MONETARY failed, using "C"
ERROR 2026-06-03 20:53:39 ProcessExecutor 6: Setting LC_PAPER failed, using "C"
ERROR 2026-06-03 20:53:39 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C"
INFO 2026-06-03 20:53:39 ProcessExecutor null device
INFO 2026-06-03 20:53:39 ProcessExecutor 1
ERROR 2026-06-03 20:53:39 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
[Wed Jun 03 20:53:39 GMT 2026] picard.analysis.CollectInsertSizeMetrics done. Elapsed time: 11.98 minutes.
Runtime.totalMemory()=165675008