File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/a2cc0a2df9c9c369d159b6cce1dc80/.command.log
Size
5.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-184b05-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/343ef37aaf38429c2d93f3c4c4babc/aih-tih-sc-184b05-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/e8cd538fa1cf86472946fdde90575d/aih-tih-sc-184b05-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e543dae6-5fea-4720-bfb6-150bf1ff20d4/82/1bfcba5045fc10a52ca200a4890a9a/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/a2cc0a2df9c9c369d159b6cce1dc80/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/a2cc0a2df9c9c369d159b6cce1dc80/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
NPM1--VPS72
starfusion
FGD4--PIK3C2G
starfusion
arriba
GTF2F2--CBY2
starfusion
arriba
BICD1--ITPR2
starfusion
SELENBP1--FABP6-AS1
starfusion
STX16--NPEPL1
starfusion
arriba
ITPR2--AC048344.1
starfusion
AC004923.1--AC127526.2
starfusion
TLK2--BET1L
starfusion
STAG1--COPB2
starfusion
PDXDC2P--NPIPB3
starfusion
AGAP12P--FRMPD2
starfusion
PRPF40B--DERA
starfusion
TVP23C--CDRT4
arriba
TRPV5--AC245427.1
arriba
RMND5B--AC114321.1
arriba
RMND5B--AC026403.1
arriba
FZD10--PIWIL1
arriba
AC026336.1--PIWIL1
arriba
ZFAT--AC087667.1
arriba
ZFAT--AC084116.2
arriba
PCDHB14--PCDHB15
arriba

  0%|          | 0/22 [00:00<?, ?it/s]
Processing NPM1--VPS72:   0%|          | 0/22 [00:00<?, ?it/s]
Processing NPM1--VPS72:   5%|▍         | 1/22 [00:00<00:02,  8.67it/s]
Processing FGD4--PIK3C2G:   5%|▍         | 1/22 [00:00<00:02,  8.67it/s]
Processing FGD4--PIK3C2G:   9%|▉         | 2/22 [00:00<00:02,  9.07it/s]
Processing GTF2F2--CBY2:   9%|▉         | 2/22 [00:00<00:02,  9.07it/s] 
Processing GTF2F2--CBY2:  14%|█▎        | 3/22 [00:00<00:02,  9.21it/s]
Processing BICD1--ITPR2:  14%|█▎        | 3/22 [00:00<00:02,  9.21it/s]
Processing BICD1--ITPR2:  18%|█▊        | 4/22 [00:00<00:01,  9.28it/s]
Processing SELENBP1--FABP6-AS1:  18%|█▊        | 4/22 [00:00<00:01,  9.28it/s]
Processing SELENBP1--FABP6-AS1:  23%|██▎       | 5/22 [00:00<00:01,  9.32it/s]
Processing STX16--NPEPL1:  23%|██▎       | 5/22 [00:00<00:01,  9.32it/s]      
Processing STX16--NPEPL1:  27%|██▋       | 6/22 [00:00<00:01,  9.34it/s]
Processing ITPR2--AC048344.1:  27%|██▋       | 6/22 [00:00<00:01,  9.34it/s]
Processing ITPR2--AC048344.1:  32%|███▏      | 7/22 [00:00<00:01,  9.35it/s]
Processing AC004923.1--AC127526.2:  32%|███▏      | 7/22 [00:00<00:01,  9.35it/s]
Processing AC004923.1--AC127526.2:  36%|███▋      | 8/22 [00:00<00:01,  9.36it/s]
Processing TLK2--BET1L:  36%|███▋      | 8/22 [00:00<00:01,  9.36it/s]           
Processing TLK2--BET1L:  41%|████      | 9/22 [00:00<00:01,  9.37it/s]
Processing STAG1--COPB2:  41%|████      | 9/22 [00:00<00:01,  9.37it/s]
Processing STAG1--COPB2:  45%|████▌     | 10/22 [00:01<00:01,  9.38it/s]
Processing PDXDC2P--NPIPB3:  45%|████▌     | 10/22 [00:01<00:01,  9.38it/s]
Processing PDXDC2P--NPIPB3:  50%|█████     | 11/22 [00:01<00:01,  9.38it/s]
Processing AGAP12P--FRMPD2:  50%|█████     | 11/22 [00:01<00:01,  9.38it/s]
Processing AGAP12P--FRMPD2:  55%|█████▍    | 12/22 [00:01<00:01,  9.38it/s]
Processing PRPF40B--DERA:  55%|█████▍    | 12/22 [00:01<00:01,  9.38it/s]  
Processing PRPF40B--DERA:  59%|█████▉    | 13/22 [00:01<00:00,  9.38it/s]
Processing TVP23C--CDRT4:  59%|█████▉    | 13/22 [00:01<00:00,  9.38it/s]
Processing TVP23C--CDRT4:  64%|██████▎   | 14/22 [00:01<00:00,  9.39it/s]
Processing TRPV5--AC245427.1:  64%|██████▎   | 14/22 [00:01<00:00,  9.39it/s]
Processing TRPV5--AC245427.1:  68%|██████▊   | 15/22 [00:01<00:00,  9.25it/s]
Processing RMND5B--AC114321.1:  68%|██████▊   | 15/22 [00:01<00:00,  9.25it/s]
Processing RMND5B--AC114321.1:  73%|███████▎  | 16/22 [00:01<00:00,  9.29it/s]
Processing RMND5B--AC026403.1:  73%|███████▎  | 16/22 [00:01<00:00,  9.29it/s]
Processing RMND5B--AC026403.1:  77%|███████▋  | 17/22 [00:01<00:00,  9.32it/s]
Processing FZD10--PIWIL1:  77%|███████▋  | 17/22 [00:01<00:00,  9.32it/s]     
Processing FZD10--PIWIL1:  82%|████████▏ | 18/22 [00:01<00:00,  9.32it/s]
Processing AC026336.1--PIWIL1:  82%|████████▏ | 18/22 [00:01<00:00,  9.32it/s]
Processing AC026336.1--PIWIL1:  86%|████████▋ | 19/22 [00:02<00:00,  9.34it/s]
Processing ZFAT--AC087667.1:  86%|████████▋ | 19/22 [00:02<00:00,  9.34it/s]  
Processing ZFAT--AC087667.1:  91%|█████████ | 20/22 [00:02<00:00,  9.34it/s]
Processing ZFAT--AC084116.2:  91%|█████████ | 20/22 [00:02<00:00,  9.34it/s]
Processing ZFAT--AC084116.2:  95%|█████████▌| 21/22 [00:02<00:00,  9.35it/s]
Processing PCDHB14--PCDHB15:  95%|█████████▌| 21/22 [00:02<00:00,  9.35it/s]
Processing PCDHB14--PCDHB15: 100%|██████████| 22/22 [00:02<00:00,  9.36it/s]
Processing PCDHB14--PCDHB15: 100%|██████████| 22/22 [00:02<00:00,  9.32it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory