Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e543dae6-5fea-4720-bfb6-150bf1ff20d4/82/1bfcba5045fc10a52ca200a4890a9a/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/4e83e0291cd79f5844978578fc5def/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/4e83e0291cd79f5844978578fc5def/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/e769f6e448381ace96fbf11463dd78/aih-tih-sc-45523c-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/245f5e90753f47a1fdedf519b86604/aih-tih-sc-45523c-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
KIAA1958--NTRK2
starfusion
arriba
DDX5--SMURF2
starfusion
arriba
FSIP1--AC013652.1
starfusion
arriba
TLK2--AC240565.1
starfusion
ERC1--RASSF7
starfusion
arriba
WWP2--MPHOSPH6
starfusion
STX16--NPEPL1
arriba
TVP23C--CDRT4
arriba
PCDHA11--PCDHAC2
arriba
PCDHA11--PCDHAC1
arriba
PCDHA11--PCDHA13
arriba
AC092807.3--DDAH1
arriba
LMNTD2--ERC1
arriba
NAE1--CAPNS2
arriba
ZFHX3--CNTNAP4
arriba
CPSF7--PIEZO2
arriba
CPSF7--AP005139.1
arriba
DHX38--WWOX
arriba
TXNL4B--CTCF
arriba
TXNL4B--CARMIL2
arriba
TLK2--FAM157A
arriba

  0%|          | 0/21 [00:00<?, ?it/s]
Processing KIAA1958--NTRK2:   0%|          | 0/21 [00:00<?, ?it/s]
Processing KIAA1958--NTRK2:   5%|▍         | 1/21 [00:00<00:02,  9.05it/s]
Processing DDX5--SMURF2:   5%|▍         | 1/21 [00:00<00:02,  9.05it/s]   
Processing DDX5--SMURF2:  10%|▉         | 2/21 [00:00<00:02,  9.34it/s]
Processing FSIP1--AC013652.1:  10%|▉         | 2/21 [00:00<00:02,  9.34it/s]
Processing FSIP1--AC013652.1:  14%|█▍        | 3/21 [00:00<00:01,  9.45it/s]
Processing TLK2--AC240565.1:  14%|█▍        | 3/21 [00:00<00:01,  9.45it/s] 
Processing TLK2--AC240565.1:  19%|█▉        | 4/21 [00:00<00:01,  9.50it/s]
Processing ERC1--RASSF7:  19%|█▉        | 4/21 [00:00<00:01,  9.50it/s]    
Processing ERC1--RASSF7:  24%|██▍       | 5/21 [00:00<00:01,  9.53it/s]
Processing WWP2--MPHOSPH6:  24%|██▍       | 5/21 [00:00<00:01,  9.53it/s]
Processing WWP2--MPHOSPH6:  29%|██▊       | 6/21 [00:00<00:01,  9.54it/s]
Processing STX16--NPEPL1:  29%|██▊       | 6/21 [00:00<00:01,  9.54it/s] 
Processing STX16--NPEPL1:  33%|███▎      | 7/21 [00:00<00:01,  9.55it/s]
Processing TVP23C--CDRT4:  33%|███▎      | 7/21 [00:00<00:01,  9.55it/s]
Processing TVP23C--CDRT4:  38%|███▊      | 8/21 [00:00<00:01,  9.56it/s]
Processing PCDHA11--PCDHAC2:  38%|███▊      | 8/21 [00:00<00:01,  9.56it/s]
Processing PCDHA11--PCDHAC2:  43%|████▎     | 9/21 [00:00<00:01,  9.57it/s]
Processing PCDHA11--PCDHAC1:  43%|████▎     | 9/21 [00:00<00:01,  9.57it/s]
Processing PCDHA11--PCDHAC1:  48%|████▊     | 10/21 [00:01<00:01,  9.56it/s]
Processing PCDHA11--PCDHA13:  48%|████▊     | 10/21 [00:01<00:01,  9.56it/s]
Processing PCDHA11--PCDHA13:  52%|█████▏    | 11/21 [00:01<00:01,  9.56it/s]
Processing AC092807.3--DDAH1:  52%|█████▏    | 11/21 [00:01<00:01,  9.56it/s]
Processing AC092807.3--DDAH1:  57%|█████▋    | 12/21 [00:01<00:00,  9.57it/s]
Processing LMNTD2--ERC1:  57%|█████▋    | 12/21 [00:01<00:00,  9.57it/s]     
Processing LMNTD2--ERC1:  62%|██████▏   | 13/21 [00:01<00:00,  9.57it/s]
Processing NAE1--CAPNS2:  62%|██████▏   | 13/21 [00:01<00:00,  9.57it/s]
Processing NAE1--CAPNS2:  67%|██████▋   | 14/21 [00:01<00:00,  9.56it/s]
Processing ZFHX3--CNTNAP4:  67%|██████▋   | 14/21 [00:01<00:00,  9.56it/s]
Processing ZFHX3--CNTNAP4:  71%|███████▏  | 15/21 [00:01<00:00,  9.57it/s]
Processing CPSF7--PIEZO2:  71%|███████▏  | 15/21 [00:01<00:00,  9.57it/s] 
Processing CPSF7--PIEZO2:  76%|███████▌  | 16/21 [00:01<00:00,  9.57it/s]
Processing CPSF7--AP005139.1:  76%|███████▌  | 16/21 [00:01<00:00,  9.57it/s]
Processing CPSF7--AP005139.1:  81%|████████  | 17/21 [00:01<00:00,  9.57it/s]
Processing DHX38--WWOX:  81%|████████  | 17/21 [00:01<00:00,  9.57it/s]      
Processing DHX38--WWOX:  86%|████████▌ | 18/21 [00:01<00:00,  9.57it/s]
Processing TXNL4B--CTCF:  86%|████████▌ | 18/21 [00:01<00:00,  9.57it/s]
Processing TXNL4B--CTCF:  90%|█████████ | 19/21 [00:01<00:00,  9.57it/s]
Processing TXNL4B--CARMIL2:  90%|█████████ | 19/21 [00:01<00:00,  9.57it/s]
Processing TXNL4B--CARMIL2:  95%|█████████▌| 20/21 [00:02<00:00,  9.57it/s]
Processing TLK2--FAM157A:  95%|█████████▌| 20/21 [00:02<00:00,  9.57it/s]  
Processing TLK2--FAM157A: 100%|██████████| 21/21 [00:02<00:00,  9.57it/s]
Processing TLK2--FAM157A: 100%|██████████| 21/21 [00:02<00:00,  9.54it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory