File Info
- Filename
- aih-tih-sc-45523c-R1_A23YTGFLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/4e83e0291cd79f5844978578fc5def/aih-tih-sc-45523c-R1_A23YTGFLT4_1.fusions.csv
- Size
- 5.1 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-45523c-R1_A23YTGFLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| KIAA1958--NTRK2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr9:112575251#chr9:84867243,reading-frame: in-frame,type: duplication,split_reads1: 54,split_reads2: 35,discordant_mates: 0,coverage1: 854,coverage2: 755,confidence: high | position: chr9:112575251:+#chr9:84867243:+,junction_reads: 94,spanning_reads: 0,ffmp: 0.3899 | |
| DDX5--SMURF2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:64502010#chr17:64546338,reading-frame: in-frame,type: duplication,split_reads1: 20,split_reads2: 13,discordant_mates: 0,coverage1: 3592,coverage2: 1039,confidence: high | position: chr17:64502010:-#chr17:64546338:-,junction_reads: 33,spanning_reads: 0,ffmp: 0.1369 | |
| FSIP1--AC013652.1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr15:39600845#chr15:39071608,reading-frame: .,type: deletion,split_reads1: 26,split_reads2: 2,discordant_mates: 0,coverage1: 1300,coverage2: 16,confidence: high | position: chr15:39600845:-#chr15:39071608:-,junction_reads: 28,spanning_reads: 0,ffmp: 0.1161 | |
| TLK2--AC240565.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126:+#chr17:106864:-,junction_reads: 20,spanning_reads: 0,ffmp: 0.0276 | ||
| ERC1--RASSF7 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr12:1104824#chr11:561762,reading-frame: out-of-frame,type: translocation,split_reads1: 5,split_reads2: 7,discordant_mates: 0,coverage1: 825,coverage2: 993,confidence: high | position: chr12:1104824:+#chr11:561762:+,junction_reads: 12,spanning_reads: 0,ffmp: 0.0498 | |
| WWP2--MPHOSPH6 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr16:69799295:+#chr16:82151514:-,junction_reads: 8,spanning_reads: 0,ffmp: 0.0332 | ||
| STX16--NPEPL1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr20:58673711#chr20:58691724,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 27,split_reads2: 36,discordant_mates: 0,coverage1: 1654,coverage2: 429,confidence: high | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 30,split_reads2: 19,discordant_mates: 0,coverage1: 1013,coverage2: 289,confidence: high | |
| PCDHA11--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140871494#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 20,split_reads2: 26,discordant_mates: 0,coverage1: 685,coverage2: 852,confidence: high | ||
| PCDHA11--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140871494#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 20,split_reads2: 26,discordant_mates: 0,coverage1: 685,coverage2: 852,confidence: high | ||
| PCDHA11--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140871494#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 20,split_reads2: 26,discordant_mates: 0,coverage1: 685,coverage2: 852,confidence: high | ||
| AC092807.3--DDAH1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:85496166#chr1:85358847,reading-frame: .,type: deletion/read-through,split_reads1: 4,split_reads2: 16,discordant_mates: 0,coverage1: 60,coverage2: 189,confidence: high | ||
| LMNTD2--ERC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:557349#chr12:1110192,reading-frame: .,type: translocation/3'-3',split_reads1: 2,split_reads2: 13,discordant_mates: 0,coverage1: 152,coverage2: 730,confidence: high | ||
| NAE1--CAPNS2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr16:66816581#chr16:55567194,reading-frame: out-of-frame,type: deletion/5'-5',split_reads1: 1,split_reads2: 13,discordant_mates: 0,coverage1: 465,coverage2: 208,confidence: high | ||
| ZFHX3--CNTNAP4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr16:73058530#chr16:76521140,reading-frame: .,type: inversion,split_reads1: 4,split_reads2: 10,discordant_mates: 0,coverage1: 125,coverage2: 175,confidence: high | ||
| CPSF7--PIEZO2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:61429182#chr18:11304951,reading-frame: out-of-frame,type: translocation,split_reads1: 7,split_reads2: 5,discordant_mates: 0,coverage1: 1591,coverage2: 9,confidence: high | ||
| CPSF7--AP005139.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:61429182#chr18:11304951,reading-frame: out-of-frame,type: translocation,split_reads1: 7,split_reads2: 5,discordant_mates: 0,coverage1: 1591,coverage2: 9,confidence: high | ||
| DHX38--WWOX | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr16:72101612#chr16:78516143,reading-frame: out-of-frame,type: deletion,split_reads1: 7,split_reads2: 5,discordant_mates: 0,coverage1: 469,coverage2: 5,confidence: high | ||
| TXNL4B--CTCF | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr16:72088987#chr16:67644685,reading-frame: out-of-frame,type: inversion,split_reads1: 9,split_reads2: 1,discordant_mates: 0,coverage1: 239,coverage2: 2,confidence: high | ||
| TXNL4B--CARMIL2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr16:72088987#chr16:67644685,reading-frame: out-of-frame,type: inversion,split_reads1: 9,split_reads2: 1,discordant_mates: 0,coverage1: 239,coverage2: 2,confidence: high | ||
| TLK2--FAM157A | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126#chr3:198180755,reading-frame: out-of-frame,type: translocation,split_reads1: 1,split_reads2: 7,discordant_mates: 0,coverage1: 1100,coverage2: 978,confidence: high |
22 rows