File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/72a73d340cc394a688a8a50e63c926/.command.log
Size
8.6 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-1274d4-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e543dae6-5fea-4720-bfb6-150bf1ff20d4/82/1bfcba5045fc10a52ca200a4890a9a/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/72a73d340cc394a688a8a50e63c926/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/f8437b5e5547d3e83e2b661164e1e9/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/72a73d340cc394a688a8a50e63c926/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/a70b197bce41c74233c83688dda6f1/aih-tih-sc-1274d4-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
CLTC--EDEM2
starfusion
RPS6KB1--VMP1
starfusion
arriba
PARP6--NRG4
starfusion
arriba
TMX2--MS4A6E
starfusion
arriba
PACSIN2--SLCO2B1
starfusion
arriba
PARD6B--NR1D1
starfusion
arriba
MAP2K1--PGPEP1L
starfusion
arriba
SYNGR1--TTLL1
starfusion
arriba
FER1L4--PIGU
starfusion
arriba
TLK2--AC240565.1
starfusion
INTS1--JAZF1
starfusion
arriba
FSIP1--AC013652.1
starfusion
TTC6--MIPOL1
starfusion
arriba
STX16--NPEPL1
starfusion
arriba
PLEKHM1P1--KCNQ2
starfusion
FBXO25--AC240565.1
starfusion
ARID4B--OR2L3
starfusion
arriba
RNF213--SRCIN1
arriba
HDGFL3--ARNT2
arriba
TFB2M--CNST
arriba
RPS6KB1--NKILA
arriba
RPS6KB1--AL162291.1
arriba
ITCH--RALGAPB
arriba
CLPX--PDCD7
arriba
TVP23C--CDRT4
arriba
RPS6KB1--AL118523.1
arriba
RPS6KB1--HSPE1P1
arriba
SMURF2--CSH1
arriba
RPN2--CNBD2
arriba
AC092807.3--DDAH1
arriba
CEP131--TSHZ2
arriba
RPN2--NORAD
arriba
TTLL12--SLCO2B1
arriba
PCDHA11--PCDHAC2
arriba
PCDHA11--PCDHAC1
arriba
PCDHA11--PCDHA13
arriba
BMP7--DHX35
arriba
BMP7--LINC01734
arriba
RBM34--OR2L3
arriba

  0%|          | 0/39 [00:00<?, ?it/s]
Processing CLTC--EDEM2:   0%|          | 0/39 [00:00<?, ?it/s]
Processing CLTC--EDEM2:   3%|▎         | 1/39 [00:00<00:04,  9.23it/s]
Processing RPS6KB1--VMP1:   3%|▎         | 1/39 [00:00<00:04,  9.23it/s]
Processing RPS6KB1--VMP1:   5%|▌         | 2/39 [00:00<00:03,  9.46it/s]
Processing PARP6--NRG4:   5%|▌         | 2/39 [00:00<00:03,  9.46it/s]  
Processing PARP6--NRG4:   8%|▊         | 3/39 [00:00<00:03,  9.54it/s]
Processing TMX2--MS4A6E:   8%|▊         | 3/39 [00:00<00:03,  9.54it/s]
Processing TMX2--MS4A6E:  10%|█         | 4/39 [00:00<00:03,  9.58it/s]
Processing PACSIN2--SLCO2B1:  10%|█         | 4/39 [00:00<00:03,  9.58it/s]
Processing PACSIN2--SLCO2B1:  13%|█▎        | 5/39 [00:00<00:03,  9.60it/s]
Processing PARD6B--NR1D1:  13%|█▎        | 5/39 [00:00<00:03,  9.60it/s]   
Processing PARD6B--NR1D1:  15%|█▌        | 6/39 [00:00<00:03,  9.61it/s]
Processing MAP2K1--PGPEP1L:  15%|█▌        | 6/39 [00:00<00:03,  9.61it/s]
Processing MAP2K1--PGPEP1L:  18%|█▊        | 7/39 [00:00<00:03,  9.62it/s]
Processing SYNGR1--TTLL1:  18%|█▊        | 7/39 [00:00<00:03,  9.62it/s]  
Processing SYNGR1--TTLL1:  21%|██        | 8/39 [00:00<00:03,  9.62it/s]
Processing FER1L4--PIGU:  21%|██        | 8/39 [00:00<00:03,  9.62it/s] 
Processing FER1L4--PIGU:  23%|██▎       | 9/39 [00:00<00:03,  9.63it/s]
Processing TLK2--AC240565.1:  23%|██▎       | 9/39 [00:00<00:03,  9.63it/s]
Processing TLK2--AC240565.1:  26%|██▌       | 10/39 [00:01<00:03,  9.63it/s]
Processing INTS1--JAZF1:  26%|██▌       | 10/39 [00:01<00:03,  9.63it/s]    
Processing INTS1--JAZF1:  28%|██▊       | 11/39 [00:01<00:02,  9.63it/s]
Processing FSIP1--AC013652.1:  28%|██▊       | 11/39 [00:01<00:02,  9.63it/s]
Processing FSIP1--AC013652.1:  31%|███       | 12/39 [00:01<00:02,  9.64it/s]
Processing TTC6--MIPOL1:  31%|███       | 12/39 [00:01<00:02,  9.64it/s]     
Processing TTC6--MIPOL1:  33%|███▎      | 13/39 [00:01<00:02,  9.64it/s]
Processing STX16--NPEPL1:  33%|███▎      | 13/39 [00:01<00:02,  9.64it/s]
Processing STX16--NPEPL1:  36%|███▌      | 14/39 [00:01<00:02,  9.64it/s]
Processing PLEKHM1P1--KCNQ2:  36%|███▌      | 14/39 [00:01<00:02,  9.64it/s]
Processing PLEKHM1P1--KCNQ2:  38%|███▊      | 15/39 [00:01<00:02,  9.64it/s]
Processing FBXO25--AC240565.1:  38%|███▊      | 15/39 [00:01<00:02,  9.64it/s]
Processing FBXO25--AC240565.1:  41%|████      | 16/39 [00:01<00:02,  9.64it/s]
Processing ARID4B--OR2L3:  41%|████      | 16/39 [00:01<00:02,  9.64it/s]     
Processing ARID4B--OR2L3:  44%|████▎     | 17/39 [00:01<00:02,  9.63it/s]
Processing RNF213--SRCIN1:  44%|████▎     | 17/39 [00:01<00:02,  9.63it/s]
Processing RNF213--SRCIN1:  46%|████▌     | 18/39 [00:01<00:02,  9.63it/s]
Processing HDGFL3--ARNT2:  46%|████▌     | 18/39 [00:01<00:02,  9.63it/s] 
Processing HDGFL3--ARNT2:  49%|████▊     | 19/39 [00:01<00:02,  9.64it/s]
Processing TFB2M--CNST:  49%|████▊     | 19/39 [00:01<00:02,  9.64it/s]  
Processing TFB2M--CNST:  51%|█████▏    | 20/39 [00:02<00:01,  9.63it/s]
Processing RPS6KB1--NKILA:  51%|█████▏    | 20/39 [00:02<00:01,  9.63it/s]
Processing RPS6KB1--NKILA:  54%|█████▍    | 21/39 [00:02<00:01,  9.64it/s]
Processing RPS6KB1--AL162291.1:  54%|█████▍    | 21/39 [00:02<00:01,  9.64it/s]
Processing RPS6KB1--AL162291.1:  56%|█████▋    | 22/39 [00:02<00:01,  9.64it/s]
Processing ITCH--RALGAPB:  56%|█████▋    | 22/39 [00:02<00:01,  9.64it/s]      
Processing ITCH--RALGAPB:  59%|█████▉    | 23/39 [00:02<00:01,  9.64it/s]
Processing CLPX--PDCD7:  59%|█████▉    | 23/39 [00:02<00:01,  9.64it/s]  
Processing CLPX--PDCD7:  62%|██████▏   | 24/39 [00:02<00:01,  9.63it/s]
Processing TVP23C--CDRT4:  62%|██████▏   | 24/39 [00:02<00:01,  9.63it/s]
Processing TVP23C--CDRT4:  64%|██████▍   | 25/39 [00:02<00:01,  9.64it/s]
Processing RPS6KB1--AL118523.1:  64%|██████▍   | 25/39 [00:02<00:01,  9.64it/s]
Processing RPS6KB1--AL118523.1:  67%|██████▋   | 26/39 [00:02<00:01,  9.64it/s]
Processing RPS6KB1--HSPE1P1:  67%|██████▋   | 26/39 [00:02<00:01,  9.64it/s]   
Processing RPS6KB1--HSPE1P1:  69%|██████▉   | 27/39 [00:02<00:01,  9.64it/s]
Processing SMURF2--CSH1:  69%|██████▉   | 27/39 [00:02<00:01,  9.64it/s]    
Processing SMURF2--CSH1:  72%|███████▏  | 28/39 [00:02<00:01,  9.64it/s]
Processing RPN2--CNBD2:  72%|███████▏  | 28/39 [00:02<00:01,  9.64it/s] 
Processing RPN2--CNBD2:  74%|███████▍  | 29/39 [00:03<00:01,  9.64it/s]
Processing AC092807.3--DDAH1:  74%|███████▍  | 29/39 [00:03<00:01,  9.64it/s]
Processing AC092807.3--DDAH1:  77%|███████▋  | 30/39 [00:03<00:00,  9.64it/s]
Processing CEP131--TSHZ2:  77%|███████▋  | 30/39 [00:03<00:00,  9.64it/s]    
Processing CEP131--TSHZ2:  79%|███████▉  | 31/39 [00:03<00:00,  9.64it/s]
Processing RPN2--NORAD:  79%|███████▉  | 31/39 [00:03<00:00,  9.64it/s]  
Processing RPN2--NORAD:  82%|████████▏ | 32/39 [00:03<00:00,  9.64it/s]
Processing TTLL12--SLCO2B1:  82%|████████▏ | 32/39 [00:03<00:00,  9.64it/s]
Processing TTLL12--SLCO2B1:  85%|████████▍ | 33/39 [00:03<00:00,  9.64it/s]
Processing PCDHA11--PCDHAC2:  85%|████████▍ | 33/39 [00:03<00:00,  9.64it/s]
Processing PCDHA11--PCDHAC2:  87%|████████▋ | 34/39 [00:03<00:00,  9.64it/s]
Processing PCDHA11--PCDHAC1:  87%|████████▋ | 34/39 [00:03<00:00,  9.64it/s]
Processing PCDHA11--PCDHAC1:  90%|████████▉ | 35/39 [00:03<00:00,  9.64it/s]
Processing PCDHA11--PCDHA13:  90%|████████▉ | 35/39 [00:03<00:00,  9.64it/s]
Processing PCDHA11--PCDHA13:  92%|█████████▏| 36/39 [00:03<00:00,  9.64it/s]
Processing BMP7--DHX35:  92%|█████████▏| 36/39 [00:03<00:00,  9.64it/s]     
Processing BMP7--DHX35:  95%|█████████▍| 37/39 [00:03<00:00,  9.64it/s]
Processing BMP7--LINC01734:  95%|█████████▍| 37/39 [00:03<00:00,  9.64it/s]
Processing BMP7--LINC01734:  97%|█████████▋| 38/39 [00:03<00:00,  9.64it/s]
Processing RBM34--OR2L3:  97%|█████████▋| 38/39 [00:03<00:00,  9.64it/s]   
Processing RBM34--OR2L3: 100%|██████████| 39/39 [00:04<00:00,  9.64it/s]
Processing RBM34--OR2L3: 100%|██████████| 39/39 [00:04<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory