Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/db0390e137cf3062481f869034d2c8/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/130f31a2b01eed9e04d5a636e4b6d0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/74bc80209e079a687f6a7767a2a825/aih-tih-sc-13d441-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/130f31a2b01eed9e04d5a636e4b6d0/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/d0c487697dc4a2d8bcd96a327dedc7/aih-tih-sc-13d441-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 268991144
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-13d441-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	268991144
Known Splicing Events:	265976736
Partial Novel Splicing Events:	1601095
Novel Splicing Events:	1311887
Filtered Splicing Events:	101426

Total splicing  Junctions:	582341
Known Splicing Junctions:	283332
Partial Novel Splicing Junctions:	167267
Novel Splicing Junctions:	131742

===================================================================
Create BED file ...
Create Interact file ...