File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/56c9f0d02dd22f9c8a9063626c6482/.command.log
Size
1.3 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-0754d2-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/d7c1d3223983082b52b8885f1a9de1/aih-tih-sc-0754d2-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e543dae6-5fea-4720-bfb6-150bf1ff20d4/82/1bfcba5045fc10a52ca200a4890a9a/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/56c9f0d02dd22f9c8a9063626c6482/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/56c9f0d02dd22f9c8a9063626c6482/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/84617cdd5c4d76ac21b4ad144a591a/aih-tih-sc-0754d2-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
EMP2--C1QTNF4
starfusion
arriba

  0%|          | 0/1 [00:00<?, ?it/s]
Processing EMP2--C1QTNF4:   0%|          | 0/1 [00:00<?, ?it/s]
Processing EMP2--C1QTNF4: 100%|██████████| 1/1 [00:00<00:00,  8.76it/s]
Processing EMP2--C1QTNF4: 100%|██████████| 1/1 [00:00<00:00,  8.74it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory