Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/70f2bd4f562dbd8a8d550d71b2b6d8/aih-tih-sc-6c4b48-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/8995c261ad27ca9d8a49ac6a05d9b3/aih-tih-sc-6c4b48-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e543dae6-5fea-4720-bfb6-150bf1ff20d4/82/1bfcba5045fc10a52ca200a4890a9a/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/8f91ac287291b29dd045d81e215012/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/8f91ac287291b29dd045d81e215012/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
XPO1--FAM161A
starfusion
arriba
LUC7L3--SERHL
starfusion
arriba
SNX31--P3H2
starfusion
arriba
CYP20A1--NBEAL1
starfusion
arriba
RIT1--SMG5
starfusion
arriba
PRDM15--YIF1B
starfusion
arriba
TEPSIN--NPLOC4
starfusion
arriba
RCAN3--GRHL3
starfusion
arriba
MRPL48--PLEKHB1
starfusion
arriba
PARP8--RASGRF2
starfusion
arriba
SFI1--RNF185
starfusion
arriba
SPINT2--SIPA1L3
starfusion
CAMK1D--ZNF345
starfusion
PNPO--KPNB1
starfusion
arriba
NLRC5--NUP93
starfusion
arriba
VCL--USP54
starfusion
arriba
BCKDHA--ANKRD27
starfusion
arriba
EML1--SLC20A2
starfusion
arriba
NFRKB--ZBTB44
starfusion
arriba
TLK2--AC240565.1
starfusion
AC060780.1--ANKS1A
starfusion
ARG2--MPP5
starfusion
arriba
TBC1D19--RBPJ
starfusion
UBE2Q2P1--GOLGA6L10
starfusion
STX16--NPEPL1
starfusion
arriba
PCDHA6--PCDHA13
arriba
PCDHA6--PCDHAC2
arriba
PCDHA6--PCDHAC1
arriba
SORBS2--ZAR1
arriba
LRRC1--RPL31P33
arriba
RBM14--RBM4
arriba
TVP23C--CDRT4
arriba
HAVCR2--HAVCR2
arriba
SLC10A4--SORBS2
arriba
ITCH--AL031668.2
arriba
ITCH--ASIP
arriba
NCOR1--FTLP12
arriba
METTL17--PRR14L
arriba
TLK2--FAM157A
arriba

  0%|          | 0/39 [00:00<?, ?it/s]
Processing XPO1--FAM161A:   0%|          | 0/39 [00:00<?, ?it/s]
Processing XPO1--FAM161A:   3%|▎         | 1/39 [00:00<00:04,  8.39it/s]
Processing LUC7L3--SERHL:   3%|▎         | 1/39 [00:00<00:04,  8.39it/s]
Processing LUC7L3--SERHL:   5%|▌         | 2/39 [00:00<00:04,  8.81it/s]
Processing SNX31--P3H2:   5%|▌         | 2/39 [00:00<00:04,  8.81it/s]  
Processing SNX31--P3H2:   8%|▊         | 3/39 [00:00<00:03,  9.05it/s]
Processing CYP20A1--NBEAL1:   8%|▊         | 3/39 [00:00<00:03,  9.05it/s]
Processing CYP20A1--NBEAL1:  10%|█         | 4/39 [00:00<00:03,  9.17it/s]
Processing RIT1--SMG5:  10%|█         | 4/39 [00:00<00:03,  9.17it/s]     
Processing RIT1--SMG5:  13%|█▎        | 5/39 [00:00<00:03,  9.17it/s]
Processing PRDM15--YIF1B:  13%|█▎        | 5/39 [00:00<00:03,  9.17it/s]
Processing PRDM15--YIF1B:  15%|█▌        | 6/39 [00:00<00:03,  9.22it/s]
Processing TEPSIN--NPLOC4:  15%|█▌        | 6/39 [00:00<00:03,  9.22it/s]
Processing TEPSIN--NPLOC4:  18%|█▊        | 7/39 [00:00<00:03,  9.26it/s]
Processing RCAN3--GRHL3:  18%|█▊        | 7/39 [00:00<00:03,  9.26it/s]  
Processing RCAN3--GRHL3:  21%|██        | 8/39 [00:00<00:03,  9.23it/s]
Processing MRPL48--PLEKHB1:  21%|██        | 8/39 [00:00<00:03,  9.23it/s]
Processing MRPL48--PLEKHB1:  23%|██▎       | 9/39 [00:00<00:03,  9.25it/s]
Processing PARP8--RASGRF2:  23%|██▎       | 9/39 [00:00<00:03,  9.25it/s] 
Processing PARP8--RASGRF2:  26%|██▌       | 10/39 [00:01<00:03,  9.27it/s]
Processing SFI1--RNF185:  26%|██▌       | 10/39 [00:01<00:03,  9.27it/s]  
Processing SFI1--RNF185:  28%|██▊       | 11/39 [00:01<00:03,  9.29it/s]
Processing SPINT2--SIPA1L3:  28%|██▊       | 11/39 [00:01<00:03,  9.29it/s]
Processing SPINT2--SIPA1L3:  31%|███       | 12/39 [00:01<00:02,  9.29it/s]
Processing CAMK1D--ZNF345:  31%|███       | 12/39 [00:01<00:02,  9.29it/s] 
Processing CAMK1D--ZNF345:  33%|███▎      | 13/39 [00:01<00:02,  9.27it/s]
Processing PNPO--KPNB1:  33%|███▎      | 13/39 [00:01<00:02,  9.27it/s]   
Processing PNPO--KPNB1:  36%|███▌      | 14/39 [00:01<00:02,  9.29it/s]
Processing NLRC5--NUP93:  36%|███▌      | 14/39 [00:01<00:02,  9.29it/s]
Processing NLRC5--NUP93:  38%|███▊      | 15/39 [00:01<00:02,  9.25it/s]
Processing VCL--USP54:  38%|███▊      | 15/39 [00:01<00:02,  9.25it/s]  
Processing VCL--USP54:  41%|████      | 16/39 [00:01<00:02,  9.28it/s]
Processing BCKDHA--ANKRD27:  41%|████      | 16/39 [00:01<00:02,  9.28it/s]
Processing BCKDHA--ANKRD27:  44%|████▎     | 17/39 [00:01<00:02,  9.27it/s]
Processing EML1--SLC20A2:  44%|████▎     | 17/39 [00:01<00:02,  9.27it/s]  
Processing EML1--SLC20A2:  46%|████▌     | 18/39 [00:01<00:02,  9.30it/s]
Processing NFRKB--ZBTB44:  46%|████▌     | 18/39 [00:01<00:02,  9.30it/s]
Processing NFRKB--ZBTB44:  49%|████▊     | 19/39 [00:02<00:02,  9.29it/s]
Processing TLK2--AC240565.1:  49%|████▊     | 19/39 [00:02<00:02,  9.29it/s]
Processing TLK2--AC240565.1:  51%|█████▏    | 20/39 [00:02<00:02,  9.26it/s]
Processing AC060780.1--ANKS1A:  51%|█████▏    | 20/39 [00:02<00:02,  9.26it/s]
Processing AC060780.1--ANKS1A:  54%|█████▍    | 21/39 [00:02<00:01,  9.28it/s]
Processing ARG2--MPP5:  54%|█████▍    | 21/39 [00:02<00:01,  9.28it/s]        
Processing ARG2--MPP5:  56%|█████▋    | 22/39 [00:02<00:01,  9.29it/s]
Processing TBC1D19--RBPJ:  56%|█████▋    | 22/39 [00:02<00:01,  9.29it/s]
Processing TBC1D19--RBPJ:  59%|█████▉    | 23/39 [00:02<00:01,  9.29it/s]
Processing UBE2Q2P1--GOLGA6L10:  59%|█████▉    | 23/39 [00:02<00:01,  9.29it/s]
Processing UBE2Q2P1--GOLGA6L10:  62%|██████▏   | 24/39 [00:02<00:01,  9.30it/s]
Processing STX16--NPEPL1:  62%|██████▏   | 24/39 [00:02<00:01,  9.30it/s]      
Processing STX16--NPEPL1:  64%|██████▍   | 25/39 [00:02<00:01,  9.32it/s]
Processing PCDHA6--PCDHA13:  64%|██████▍   | 25/39 [00:02<00:01,  9.32it/s]
Processing PCDHA6--PCDHA13:  67%|██████▋   | 26/39 [00:02<00:01,  9.28it/s]
Processing PCDHA6--PCDHAC2:  67%|██████▋   | 26/39 [00:02<00:01,  9.28it/s]
Processing PCDHA6--PCDHAC2:  69%|██████▉   | 27/39 [00:02<00:01,  9.26it/s]
Processing PCDHA6--PCDHAC1:  69%|██████▉   | 27/39 [00:02<00:01,  9.26it/s]
Processing PCDHA6--PCDHAC1:  72%|███████▏  | 28/39 [00:03<00:01,  9.29it/s]
Processing SORBS2--ZAR1:  72%|███████▏  | 28/39 [00:03<00:01,  9.29it/s]   
Processing SORBS2--ZAR1:  74%|███████▍  | 29/39 [00:03<00:01,  9.24it/s]
Processing LRRC1--RPL31P33:  74%|███████▍  | 29/39 [00:03<00:01,  9.24it/s]
Processing LRRC1--RPL31P33:  77%|███████▋  | 30/39 [00:03<00:00,  9.26it/s]
Processing RBM14--RBM4:  77%|███████▋  | 30/39 [00:03<00:00,  9.26it/s]    
Processing RBM14--RBM4:  79%|███████▉  | 31/39 [00:03<00:00,  9.30it/s]
Processing TVP23C--CDRT4:  79%|███████▉  | 31/39 [00:03<00:00,  9.30it/s]
Processing TVP23C--CDRT4:  82%|████████▏ | 32/39 [00:03<00:00,  9.31it/s]
Processing HAVCR2--HAVCR2:  82%|████████▏ | 32/39 [00:03<00:00,  9.31it/s]
Processing HAVCR2--HAVCR2:  85%|████████▍ | 33/39 [00:03<00:00,  9.29it/s]
Processing SLC10A4--SORBS2:  85%|████████▍ | 33/39 [00:03<00:00,  9.29it/s]
Processing SLC10A4--SORBS2:  87%|████████▋ | 34/39 [00:03<00:00,  9.30it/s]
Processing ITCH--AL031668.2:  87%|████████▋ | 34/39 [00:03<00:00,  9.30it/s]
Processing ITCH--AL031668.2:  90%|████████▉ | 35/39 [00:03<00:00,  9.31it/s]
Processing ITCH--ASIP:  90%|████████▉ | 35/39 [00:03<00:00,  9.31it/s]      
Processing ITCH--ASIP:  92%|█████████▏| 36/39 [00:03<00:00,  9.28it/s]
Processing NCOR1--FTLP12:  92%|█████████▏| 36/39 [00:03<00:00,  9.28it/s]
Processing NCOR1--FTLP12:  95%|█████████▍| 37/39 [00:04<00:00,  9.19it/s]
Processing METTL17--PRR14L:  95%|█████████▍| 37/39 [00:04<00:00,  9.19it/s]
Processing METTL17--PRR14L:  97%|█████████▋| 38/39 [00:04<00:00,  9.23it/s]
Processing TLK2--FAM157A:  97%|█████████▋| 38/39 [00:04<00:00,  9.23it/s]  
Processing TLK2--FAM157A: 100%|██████████| 39/39 [00:04<00:00,  9.26it/s]
Processing TLK2--FAM157A: 100%|██████████| 39/39 [00:04<00:00,  9.25it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory