File Info
- Filename
- aih-tih-sc-6c4b48-R1_A23YTGFLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/8f91ac287291b29dd045d81e215012/aih-tih-sc-6c4b48-R1_A23YTGFLT4_1.fusions.csv
- Size
- 10.7 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-6c4b48-R1_A23YTGFLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| XPO1--FAM161A | FusionGDB2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * (0.000) | position: chr2:61481185#chr2:61827258,reading-frame: in-frame,type: duplication,split_reads1: 300,split_reads2: 240,discordant_mates: 11,coverage1: 7755,coverage2: 697,confidence: high | position: chr2:61481185:-#chr2:61827258:-,junction_reads: 967,spanning_reads: 13,ffmp: 3.3031 |
| LUC7L3--SERHL | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:50746702#chr22:42501625,reading-frame: out-of-frame,type: translocation,split_reads1: 179,split_reads2: 238,discordant_mates: 16,coverage1: 2880,coverage2: 1257,confidence: high | position: chr17:50746702:+#chr22:42501625:+,junction_reads: 511,spanning_reads: 16,ffmp: 1.776 | |
| SNX31--P3H2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr8:100596639#chr3:189995442,reading-frame: in-frame,type: translocation,split_reads1: 213,split_reads2: 264,discordant_mates: 41,coverage1: 2039,coverage2: 782,confidence: high | position: chr8:100596639:-#chr3:189995442:-,junction_reads: 495,spanning_reads: 41,ffmp: 1.8066 | |
| CYP20A1--NBEAL1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr2:203252109#chr2:203041765,reading-frame: in-frame,type: duplication,split_reads1: 230,split_reads2: 167,discordant_mates: 19,coverage1: 2714,coverage2: 3033,confidence: high | position: chr2:203252109:+#chr2:203041765:+,junction_reads: 446,spanning_reads: 19,ffmp: 1.5673 | |
| RIT1--SMG5 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr1:155904311#chr1:156268415,reading-frame: out-of-frame,type: duplication,split_reads1: 133,split_reads2: 156,discordant_mates: 12,coverage1: 1508,coverage2: 3243,confidence: high | position: chr1:155904311:-#chr1:156268415:-,junction_reads: 296,spanning_reads: 12,ffmp: 1.0381 | |
| PRDM15--YIF1B | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr21:41854566#chr19:38309643,reading-frame: in-frame,type: translocation,split_reads1: 141,split_reads2: 141,discordant_mates: 8,coverage1: 936,coverage2: 8844,confidence: high | position: chr21:41854566:-#chr19:38309643:-,junction_reads: 288,spanning_reads: 8,ffmp: 0.9977 | |
| TEPSIN--NPLOC4 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:81238986#chr17:81629805,reading-frame: in-frame,type: duplication,split_reads1: 67,split_reads2: 213,discordant_mates: 0,coverage1: 627,coverage2: 12152,confidence: high | position: chr17:81238986:-#chr17:81629805:-,junction_reads: 286,spanning_reads: 0,ffmp: 0.964 | |
| RCAN3--GRHL3 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr1:24503150#chr1:24350058,reading-frame: .,type: duplication,split_reads1: 33,split_reads2: 213,discordant_mates: 9,coverage1: 340,coverage2: 23755,confidence: high | position: chr1:24503150:+#chr1:24350058:+,junction_reads: 252,spanning_reads: 9,ffmp: 0.8788 | |
| MRPL48--PLEKHB1 | Mitelman,FusionGDB2 | 0.375 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.000) | position: chr11:73844976#chr11:73649012,reading-frame: out-of-frame,type: duplication,split_reads1: 44,split_reads2: 91,discordant_mates: 4,coverage1: 1765,coverage2: 665,confidence: high | position: chr11:73844976:+#chr11:73649012:+,junction_reads: 136,spanning_reads: 5,ffmp: 0.4753 |
| PARP8--RASGRF2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr5:50797233#chr5:81042877,reading-frame: in-frame,type: deletion,split_reads1: 54,split_reads2: 64,discordant_mates: 8,coverage1: 1367,coverage2: 361,confidence: high | position: chr5:50797233:+#chr5:81042877:+,junction_reads: 118,spanning_reads: 7,ffmp: 0.4213 | |
| SFI1--RNF185 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr22:31496637#chr22:31187047,reading-frame: .,type: duplication,split_reads1: 1,split_reads2: 101,discordant_mates: 4,coverage1: 415,coverage2: 1133,confidence: high | position: chr22:31496637:+#chr22:31187047:+,junction_reads: 104,spanning_reads: 4,ffmp: 0.364 | |
| SPINT2--SIPA1L3 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr19:38289191:+#chr19:38182519:+,junction_reads: 95,spanning_reads: 7,ffmp: 0.3438 | |
| CAMK1D--ZNF345 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr10:12349910:+#chr19:36892818:+,junction_reads: 88,spanning_reads: 2,ffmp: 0.3033 | ||
| PNPO--KPNB1 | FusionGDB2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * (0.000) | position: chr17:47941813#chr17:47680020,reading-frame: out-of-frame,type: duplication,split_reads1: 47,split_reads2: 32,discordant_mates: 3,coverage1: 3366,coverage2: 4283,confidence: high | position: chr17:47941813:+#chr17:47680020:+,junction_reads: 82,spanning_reads: 3,ffmp: 0.2829 |
| NLRC5--NUP93 | Mitelman,FusionGDB2 | 0.375 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.000) | position: chr16:57043604#chr16:56798476,reading-frame: out-of-frame,type: duplication,split_reads1: 22,split_reads2: 56,discordant_mates: 13,coverage1: 1231,coverage2: 2418,confidence: high | position: chr16:57043604:+#chr16:56798476:+,junction_reads: 79,spanning_reads: 13,ffmp: 0.3101 |
| VCL--USP54 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr10:74074903#chr10:73530835,reading-frame: out-of-frame,type: inversion,split_reads1: 56,split_reads2: 15,discordant_mates: 0,coverage1: 1416,coverage2: 286,confidence: high | position: chr10:74074903:+#chr10:73530835:-,junction_reads: 75,spanning_reads: 0,ffmp: 0.2528 | |
| BCKDHA--ANKRD27 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr19:41414157#chr19:32607832,reading-frame: out-of-frame,type: inversion,split_reads1: 17,split_reads2: 42,discordant_mates: 0,coverage1: 2124,coverage2: 6870,confidence: high | position: chr19:41414157:+#chr19:32607832:-,junction_reads: 60,spanning_reads: 0,ffmp: 0.2022 | |
| EML1--SLC20A2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr14:99737860#chr8:42444762,reading-frame: in-frame,type: translocation,split_reads1: 17,split_reads2: 32,discordant_mates: 1,coverage1: 66,coverage2: 2705,confidence: high | position: chr14:99737860:+#chr8:42444762:-,junction_reads: 50,spanning_reads: 1,ffmp: 0.1719 | |
| NFRKB--ZBTB44 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr11:129878309#chr11:130239896,reading-frame: out-of-frame,type: duplication,split_reads1: 28,split_reads2: 13,discordant_mates: 3,coverage1: 1894,coverage2: 1469,confidence: high | position: chr11:129878309:-#chr11:130239896:-,junction_reads: 42,spanning_reads: 3,ffmp: 0.1517 | |
| TLK2--AC240565.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126:+#chr17:106864:-,junction_reads: 36,spanning_reads: 0,ffmp: 0.0537 | ||
| AC060780.1--ANKS1A | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:43166980:-#chr6:35017473:+,junction_reads: 29,spanning_reads: 0,ffmp: 0.0961 | ||
| ARG2--MPP5 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr14:67642363#chr14:67269701,reading-frame: out-of-frame,type: duplication,split_reads1: 14,split_reads2: 2,discordant_mates: 1,coverage1: 218,coverage2: 72,confidence: high | position: chr14:67642363:+#chr14:67269701:+,junction_reads: 16,spanning_reads: 1,ffmp: 0.0573 | |
| TBC1D19--RBPJ | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr4:26637285:+#chr4:26386353:+,junction_reads: 15,spanning_reads: 1,ffmp: 0.0526 | ||
| UBE2Q2P1--GOLGA6L10 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:84526781:-#chr15:82347629:-,junction_reads: 14,spanning_reads: 0,ffmp: 0.0455 | ||
| STX16--NPEPL1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr20:58673711#chr20:58691724,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 51,split_reads2: 55,discordant_mates: 3,coverage1: 2124,coverage2: 583,confidence: high | position: chr20:58673711:+#chr20:58691724:+,junction_reads: 14,spanning_reads: 0,ffmp: 0.0472 | |
| PCDHA6--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140830485#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 60,split_reads2: 174,discordant_mates: 4,coverage1: 602,coverage2: 709,confidence: high | ||
| PCDHA6--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140830485#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 60,split_reads2: 174,discordant_mates: 4,coverage1: 602,coverage2: 709,confidence: high | ||
| PCDHA6--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140830485#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 60,split_reads2: 173,discordant_mates: 4,coverage1: 602,coverage2: 709,confidence: high | ||
| SORBS2--ZAR1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr4:185627510#chr4:48490989,reading-frame: .,type: deletion/5'-5',split_reads1: 64,split_reads2: 152,discordant_mates: 5,coverage1: 94,coverage2: 628,confidence: high | ||
| LRRC1--RPL31P33 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr6:53882976#chr6:53368671,reading-frame: out-of-frame,type: duplication,split_reads1: 123,split_reads2: 14,discordant_mates: 10,coverage1: 3935,coverage2: 33,confidence: high | ||
| RBM14--RBM4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr11:66617057#chr11:66646027,reading-frame: in-frame,type: deletion/read-through,split_reads1: 49,split_reads2: 90,discordant_mates: 4,coverage1: 9064,coverage2: 5588,confidence: high | |
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15540433#chr17:15440285,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 61,split_reads2: 31,discordant_mates: 3,coverage1: 4138,coverage2: 288,confidence: high | |
| HAVCR2--HAVCR2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:157104666#chr5:157106962,reading-frame: in-frame,type: duplication/non-canonical_splicing,split_reads1: 38,split_reads2: 34,discordant_mates: 0,coverage1: 797,coverage2: 888,confidence: high | ||
| SLC10A4--SORBS2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr4:48485142#chr4:185632570,reading-frame: out-of-frame,type: deletion/5'-5',split_reads1: 39,split_reads2: 19,discordant_mates: 0,coverage1: 855,coverage2: 28,confidence: high | ||
| ITCH--AL031668.2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr20:34457474#chr20:34172948,reading-frame: out-of-frame,type: duplication,split_reads1: 47,split_reads2: 5,discordant_mates: 2,coverage1: 4591,coverage2: 12,confidence: high | ||
| ITCH--ASIP | Mitelman,FusionGDB2 | 0.312 | 0.5 * (0.125) + 0.5 * (0.500 + 0.000) | position: chr20:34457474#chr20:34172948,reading-frame: out-of-frame,type: duplication,split_reads1: 47,split_reads2: 5,discordant_mates: 2,coverage1: 4591,coverage2: 12,confidence: high | |
| NCOR1--FTLP12 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:16119423#chr17:16391613,reading-frame: out-of-frame,type: duplication/5'-5',split_reads1: 29,split_reads2: 2,discordant_mates: 2,coverage1: 3177,coverage2: 3,confidence: high | ||
| METTL17--PRR14L | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr14:20995951#chr22:31711164,reading-frame: out-of-frame,type: translocation/5'-5',split_reads1: 20,split_reads2: 2,discordant_mates: 0,coverage1: 2661,coverage2: 4,confidence: high | ||
| TLK2--FAM157A | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126#chr3:198180755,reading-frame: .,type: translocation,split_reads1: 3,split_reads2: 14,discordant_mates: 0,coverage1: 2528,coverage2: 708,confidence: high |
40 rows