Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/f46c446ee3afbc48176b612ea190de/aih-tih-sc-3270ab-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/db0390e137cf3062481f869034d2c8/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/497f6c93d457a5d8a4eb42714f2c5b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/497f6c93d457a5d8a4eb42714f2c5b/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/b41a656e5398795a74f124141c742a/aih-tih-sc-3270ab-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 325902503
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-3270ab-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	325902503
Known Splicing Events:	322739047
Partial Novel Splicing Events:	1528951
Novel Splicing Events:	1534328
Filtered Splicing Events:	100177

Total splicing  Junctions:	602324
Known Splicing Junctions:	289818
Partial Novel Splicing Junctions:	174534
Novel Splicing Junctions:	137972

===================================================================
Create BED file ...
Create Interact file ...