Done.
-parsing GTF file: /tmp/nxf.XSRTDz90GE/aih-tih-sc-da06ce-R1_A23YTGFLT4_1.gtf
* Running CMD: /usr/local/bin/STAR  --runThreadN 8  --genomeDir /tmp/nxf.XSRTDz90GE/ctat_genome_lib_build_dir/ref_genome.fa.star.idx  --outSAMtype BAM SortedByCoordinate  --twopassMode None  --alignSJDBoverhangMin 10  --genomeSuffixLengthMax 10000 --limitBAMsortRAM 47271261705  --alignInsertionFlush Right   --alignMatesGapMax 100000  --alignIntronMax 100000  --outSAMattributes All  --readFilesIn /tmp/nxf.XSRTDz90GE/aih-tih-sc-da06ce-R1_A23YTGFLT4_1_1.fastp.fastq.gz /tmp/nxf.XSRTDz90GE/aih-tih-sc-da06ce-R1_A23YTGFLT4_1_2.fastp.fastq.gz  --genomeFastaFiles /tmp/nxf.XSRTDz90GE/fi_workdir/aih-tih-sc-da06ce-R1_A23YTGFLT4_1.fa  --outSAMfilter KeepAllAddedReferences  --sjdbGTFfile /tmp/nxf.XSRTDz90GE/fi_workdir/aih-tih-sc-da06ce-R1_A23YTGFLT4_1.gtf  --alignSJstitchMismatchNmax 5 -1 5 5  --scoreGapNoncan -6  --readFilesCommand 'gunzip -c' 
* Running CMD: mv Aligned.sortedByCoord.out.bam aih-tih-sc-da06ce-R1_A23YTGFLT4_1.star.sortedByCoord.out.bam
* Running CMD: samtools index aih-tih-sc-da06ce-R1_A23YTGFLT4_1.star.sortedByCoord.out.bam
23:18:53 : INFO : Done.
-parsing GTF file: /tmp/nxf.XSRTDz90GE/fi_workdir/aih-tih-sc-da06ce-R1_A23YTGFLT4_1.gtf
-parsing /tmp/nxf.XSRTDz90GE/fi_workdir/aih-tih-sc-da06ce-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam

[10000]   
[20000]   
[30000]   
[40000]   
[50000]   
[60000]   
[70000]   
[80000]   
[90000]   
[100000]   
[110000]   
[120000]   
[130000]   
[140000]   
[150000]   
[160000]   
[170000]   
[180000]   
[190000]   
[200000]   
[210000]   
[220000]   
[230000]   
[240000]   
[250000]   
[260000]   
[270000]   
[280000]   
[290000]   
[300000]   
[310000]   
[320000]   
[330000]   
[340000]   
[350000]   
[360000]   
[370000]   
[380000]   -done parsing /tmp/nxf.XSRTDz90GE/fi_workdir/aih-tih-sc-da06ce-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.  Extracting junction info.
junction read elimination tally: $VAR1 = {
          'per_id < 96' => 1796,
          'low complexity anchor region' => 1,
          ' ** passed ** ' => 1465,
          'num genes matched < 2' => 1,
          'exons hit < 2' => 1,
          'num_hits: 2 != num_counted_on_fusion_contigs 1 ' => 101,
          'num_hits: 4 != num_counted_on_fusion_contigs 1 ' => 2,
          'seq-similar region overlap' => 117,
          'small anchor length' => 54,
          'excessive soft clipping' => 3759
        };
-writing fusion junction support info.
-outputting the spanning read info: /tmp/nxf.XSRTDz90GE/fi_workdir/aih-tih-sc-da06ce-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info.
 - counting read alignments among fusion contigs.

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   -fusion SPANNING read extraction for scaff: AC092807.3--DDAH1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   
[70000]   
[71000]   
[72000]   
[73000]   
[74000]   
[75000]   
[76000]   
[77000]   
[78000]   
[79000]   
[80000]   
[81000]   
[82000]   
[83000]   
[84000]   
[85000]   
[86000]   
[87000]   
[88000]   
[89000]   
[90000]   
[91000]   
[92000]   
[93000]   
[94000]   
[95000]   
[96000]   
[97000]   
[98000]   
[99000]   
[100000]   
[101000]   
[102000]   
[103000]   
[104000]   
[105000]   
[106000]   
[107000]   
[108000]   
[109000]   
[110000]   
[111000]   
[112000]   
[113000]   
[114000]   
[115000]   
[116000]   
[117000]   
[118000]   
[119000]   
[120000]   
[121000]   
[122000]   
[123000]   
[124000]   
[125000]   
[126000]   
[127000]   
[128000]   
[129000]   
[130000]   
[131000]   
[132000]   
[133000]   
[134000]   
[135000]   
[136000]   
[137000]   
[138000]   
[139000]   
[140000]   
[141000]   
[142000]   
[143000]   
[144000]   
[145000]   
[146000]   
[147000]   
[148000]   
[149000]   
[150000]   
[151000]   
[152000]   
[153000]   
[154000]   
[155000]   
[156000]   
[157000]   
[158000]   
[159000]   
[160000]   
[161000]   
[162000]   
[163000]   
[164000]   
[165000]   
[166000]   
[167000]   
[168000]   
[169000]   
[170000]   
[171000]   
[172000]   
[173000]   
[174000]   
[175000]   
[176000]   
[177000]   
[178000]   
[179000]   
[180000]   
[181000]   
[182000]   
[183000]   
[184000]   
[185000]   
[186000]   
[187000]   
[188000]   
[189000]   
[190000]   
[191000]   
[192000]   
[193000]   
[194000]   
[195000]   
[196000]   
[197000]   
[198000]   
[199000]   
[200000]   
[201000]   
[202000]   
[203000]   
[204000]   -fusion SPANNING read extraction for scaff: CCAR2--AC055854.1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   -fusion SPANNING read extraction for scaff: PAPOLA--RBMXP1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   -fusion SPANNING read extraction for scaff: PAPOLA--FO393412.1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   -fusion SPANNING read extraction for scaff: PCDHA10--PCDHAC1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   -fusion SPANNING read extraction for scaff: PCDHA10--PCDHAC2

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   -fusion SPANNING read extraction for scaff: PCDHA10--PCDHA13

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   -fusion SPANNING read extraction for scaff: PRSS27--TPSB2

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   -fusion SPANNING read extraction for scaff: STON1--GTF2A1L

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   -fusion SPANNING read extraction for scaff: TLK2--AC240565.1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   -fusion SPANNING read extraction for scaff: TVP23C--CDRT4
-filtered reads reasons: $VAR1 = {
          'seq similar region alignment' => 13295,
          'lacks exon overlap' => 3691
        };
EM: Starting log likelihood: -1603.300294
EM: Round [1] log likelihood: -1603.212216
EM: Round [2] log likelihood: -1603.167964
EM: Round [3] log likelihood: -1603.126749
EM: Round [4] log likelihood: -1603.088181
EM: Round [5] log likelihood: -1603.052008
EM: Round [6] log likelihood: -1603.018010
EM: Round [7] log likelihood: -1602.985996
EM: Round [8] log likelihood: -1602.955798
EM: Round [9] log likelihood: -1602.927269
EM: Round [10] log likelihood: -1602.900276
EM: Round [11] log likelihood: -1602.874703
EM: Round [12] log likelihood: -1602.850445
EM: Round [13] log likelihood: -1602.827408
EM: Round [14] log likelihood: -1602.805508
EM: Round [15] log likelihood: -1602.784666
EM: Round [16] log likelihood: -1602.764814
EM: Round [17] log likelihood: -1602.745887
EM: Round [18] log likelihood: -1602.727828
EM: Round [19] log likelihood: -1602.710583
EM: Round [20] log likelihood: -1602.694104
EM: Round [21] log likelihood: -1602.678346
EM: Round [22] log likelihood: -1602.663266
EM: Round [23] log likelihood: -1602.648827
EM: Round [24] log likelihood: -1602.634994
EM: Round [25] log likelihood: -1602.621732
EM: Round [26] log likelihood: -1602.609013
EM: Round [27] log likelihood: -1602.596806
EM: Round [28] log likelihood: -1602.585086
EM: Round [29] log likelihood: -1602.573828
EM: Round [30] log likelihood: -1602.563008
EM: Round [31] log likelihood: -1602.552605
EM: Round [32] log likelihood: -1602.542598
EM: Round [33] log likelihood: -1602.532969
EM: Round [34] log likelihood: -1602.523699
EM: Round [35] log likelihood: -1602.514771
EM: Round [36] log likelihood: -1602.506170
EM: Round [37] log likelihood: -1602.497881
EM: Round [38] log likelihood: -1602.489890
EM: Round [39] log likelihood: -1602.482182
EM: Round [40] log likelihood: -1602.474746
EM: Round [41] log likelihood: -1602.467570
EM: Round [42] log likelihood: -1602.460642
EM: Round [43] log likelihood: -1602.453951
EM: Round [44] log likelihood: -1602.447489
EM: Round [45] log likelihood: -1602.441244
EM: Round [46] log likelihood: -1602.435208
EM: Round [47] log likelihood: -1602.429372
EM: Round [48] log likelihood: -1602.423728
EM: Round [49] log likelihood: -1602.418269
EM: Round [50] log likelihood: -1602.412986
EM: Round [51] log likelihood: -1602.407873
EM: Round [52] log likelihood: -1602.402923
EM: Round [53] log likelihood: -1602.398129
EM: Round [54] log likelihood: -1602.393486
EM: Round [55] log likelihood: -1602.388988
EM: Round [56] log likelihood: -1602.384628
EM: Round [57] log likelihood: -1602.380403
EM: Round [58] log likelihood: -1602.376306
EM: Round [59] log likelihood: -1602.372333
EM: Round [60] log likelihood: -1602.368479
EM: Round [61] log likelihood: -1602.364740
EM: Round [62] log likelihood: -1602.361112
EM: Round [63] log likelihood: -1602.357590
EM: Round [64] log likelihood: -1602.354171
EM: Round [65] log likelihood: -1602.350851
EM: Round [66] log likelihood: -1602.347626
EM: Round [67] log likelihood: -1602.344494
EM: Round [68] log likelihood: -1602.341450
EM: Round [69] log likelihood: -1602.338492
EM: Round [70] log likelihood: -1602.335617
EM: Round [71] log likelihood: -1602.332822
EM: Round [72] log likelihood: -1602.330104
EM: Round [73] log likelihood: -1602.327460
EM: Round [74] log likelihood: -1602.324889
EM: Round [75] log likelihood: -1602.322387
EM: Round [76] log likelihood: -1602.319952
EM: Round [77] log likelihood: -1602.317583
EM: Round [78] log likelihood: -1602.315276
EM: Round [79] log likelihood: -1602.313030
EM: Round [80] log likelihood: -1602.310843
EM: Round [81] log likelihood: -1602.308713
EM: Round [82] log likelihood: -1602.306638
EM: Round [83] log likelihood: -1602.304617
EM: Round [84] log likelihood: -1602.302647
EM: Round [85] log likelihood: -1602.300727
EM: Round [86] log likelihood: -1602.298856
EM: Round [87] log likelihood: -1602.297031
EM: Round [88] log likelihood: -1602.295252
EM: Round [89] log likelihood: -1602.293518
EM: Round [90] log likelihood: -1602.291826
EM: Round [91] log likelihood: -1602.290175
EM: Round [92] log likelihood: -1602.288565
EM: Round [93] log likelihood: -1602.286993
EM: Round [94] log likelihood: -1602.285460
EM: Round [95] log likelihood: -1602.283963
EM: Round [96] log likelihood: -1602.282502
EM: Round [97] log likelihood: -1602.281076
EM: Round [98] log likelihood: -1602.279683
EM: Round [99] log likelihood: -1602.278323
EM: Round [100] log likelihood: -1602.276995
EM: Round [101] log likelihood: -1602.275697
EM: Round [102] log likelihood: -1602.274430
EM: Round [103] log likelihood: -1602.273191
EM: Round [104] log likelihood: -1602.271981
EM: Round [105] log likelihood: -1602.270798
EM: Round [106] log likelihood: -1602.269642
EM: Round [107] log likelihood: -1602.268512
EM: Round [108] log likelihood: -1602.267408
EM: Round [109] log likelihood: -1602.266328
EM: Round [110] log likelihood: -1602.265272
EM: Round [111] log likelihood: -1602.264239
EM: Round [112] log likelihood: -1602.263229
EM: Round [113] log likelihood: -1602.262241
EM: Round [114] log likelihood: -1602.261274
EM: Round [115] log likelihood: -1602.260329
EM: Round [116] log likelihood: -1602.259404
EM: Round [117] log likelihood: -1602.258498
EM: Round [118] log likelihood: -1602.257613
EM: Round [119] log likelihood: -1602.256746
EM: Round [120] log likelihood: -1602.255897
EM: Round [121] log likelihood: -1602.255066
EM: Round [122] log likelihood: -1602.254253
EM: Round [123] log likelihood: -1602.253457
EM: Round [124] log likelihood: -1602.252678
EM: Round [125] log likelihood: -1602.251915
EM: Round [126] log likelihood: -1602.251167
EM: Round [127] log likelihood: -1602.250435
EM: Round [128] log likelihood: -1602.249718
EM: Round [129] log likelihood: -1602.249016
EM: Round [130] log likelihood: -1602.248328
EM: Round [131] log likelihood: -1602.247654
EM: Round [132] log likelihood: -1602.246994
EM: Round [133] log likelihood: -1602.246347
EM: Round [134] log likelihood: -1602.245713
EM: Round [135] log likelihood: -1602.245092
EM: Round [136] log likelihood: -1602.244484
EM: Round [137] log likelihood: -1602.243887
EM: Round [138] log likelihood: -1602.243303
EM: Round [139] log likelihood: -1602.242730
EM: Round [140] log likelihood: -1602.242168
EM: Round [141] log likelihood: -1602.241617
EM: Round [142] log likelihood: -1602.241078
EM: Round [143] log likelihood: -1602.240548
EM: Round [144] log likelihood: -1602.240030
EM: Round [145] log likelihood: -1602.239521
EM: Round [146] log likelihood: -1602.239022
EM: Round [147] log likelihood: -1602.238533
EM: Round [148] log likelihood: -1602.238053
EM: Round [149] log likelihood: -1602.237583
EM: Round [150] log likelihood: -1602.237122
EM: Round [151] log likelihood: -1602.236669
EM: Round [152] log likelihood: -1602.236225
EM: Round [153] log likelihood: -1602.235790
EM: Round [154] log likelihood: -1602.235363
EM: Round [155] log likelihood: -1602.234944
EM: Round [156] log likelihood: -1602.234533
EM: Round [157] log likelihood: -1602.234130
EM: Round [158] log likelihood: -1602.233734
EM: Round [159] log likelihood: -1602.233346
EM: Round [160] log likelihood: -1602.232966
EM: Round [161] log likelihood: -1602.232592
EM: Round [162] log likelihood: -1602.232226
EM: Round [163] log likelihood: -1602.231866
EM: Round [164] log likelihood: -1602.231513
EM: Round [165] log likelihood: -1602.231166
EM: Round [166] log likelihood: -1602.230827
EM: Round [167] log likelihood: -1602.230493
EM: Round [168] log likelihood: -1602.230165
EM: Round [169] log likelihood: -1602.229844
EM: Round [170] log likelihood: -1602.229529
EM: Round [171] log likelihood: -1602.229219
EM: Round [172] log likelihood: -1602.228915
EM: Round [173] log likelihood: -1602.228617
EM: Round [174] log likelihood: -1602.228324
EM: Round [175] log likelihood: -1602.228037
EM: Round [176] log likelihood: -1602.227755
EM: Round [177] log likelihood: -1602.227478
EM: Round [178] log likelihood: -1602.227206
EM: Round [179] log likelihood: -1602.226939
EM: Round [180] log likelihood: -1602.226677
EM: Round [181] log likelihood: -1602.226419
EM: Round [182] log likelihood: -1602.226167
EM: Round [183] log likelihood: -1602.225919
EM: Round [184] log likelihood: -1602.225675
EM: Round [185] log likelihood: -1602.225436
EM: Round [186] log likelihood: -1602.225201
EM: Round [187] log likelihood: -1602.224971
EM: Round [188] log likelihood: -1602.224744
EM: Round [189] log likelihood: -1602.224522
EM: Round [190] log likelihood: -1602.224304
EM: Round [191] log likelihood: -1602.224089
EM: Round [192] log likelihood: -1602.223879
EM: Round [193] log likelihood: -1602.223672
EM: Round [194] log likelihood: -1602.223469
EM: Round [195] log likelihood: -1602.223270
EM: Round [196] log likelihood: -1602.223074
EM: Round [197] log likelihood: -1602.222882
EM: Round [198] log likelihood: -1602.222693
EM: Round [199] log likelihood: -1602.222507
EM: Round [200] log likelihood: -1602.222325
EM: Round [201] log likelihood: -1602.222146
EM: Round [202] log likelihood: -1602.221970
EM: Round [203] log likelihood: -1602.221798
EM: Round [204] log likelihood: -1602.221628
EM: Round [205] log likelihood: -1602.221462
EM: Round [206] log likelihood: -1602.221298
EM: Round [207] log likelihood: -1602.221138
EM: Round [208] log likelihood: -1602.220980
EM: Round [209] log likelihood: -1602.220825
EM: Round [210] log likelihood: -1602.220673
EM: Round [211] log likelihood: -1602.220523
EM: Round [212] log likelihood: -1602.220376
EM: Round [213] log likelihood: -1602.220232
EM: Round [214] log likelihood: -1602.220090
EM: Round [215] log likelihood: -1602.219951
EM: Round [216] log likelihood: -1602.219814
EM: Round [217] log likelihood: -1602.219680
EM: Round [218] log likelihood: -1602.219548
EM: Round [219] log likelihood: -1602.219418
EM: Round [220] log likelihood: -1602.219291
EM: Round [221] log likelihood: -1602.219165
EM: Round [222] log likelihood: -1602.219043
EM: Round [223] log likelihood: -1602.218922
EM: Round [224] log likelihood: -1602.218803
EM: Round [225] log likelihood: -1602.218687
EM: Round [226] log likelihood: -1602.218572
EM: Round [227] log likelihood: -1602.218460
EM: Round [228] log likelihood: -1602.218349
EM: Round [229] log likelihood: -1602.218240
EM: Round [230] log likelihood: -1602.218134
EM: Round [231] log likelihood: -1602.218029
EM: Round [232] log likelihood: -1602.217926
EM: Round [233] log likelihood: -1602.217825
EM: Round [234] log likelihood: -1602.217725
EM: Stopping iterations at round 234 due to insufficient improvement in likelihood.
[bam_sort_core] merging from 0 files and 8 in-memory blocks...
-extracting read coordinates from /tmp/nxf.XSRTDz90GE/aih-tih-sc-da06ce-R1_A23YTGFLT4_1.consolidated.bam into /tmp/nxf.XSRTDz90GE/aih-tih-sc-da06ce-R1_A23YTGFLT4_1.consolidated.bam.read_coords

CMD: touch /tmp/nxf.XSRTDz90GE/aih-tih-sc-da06ce-R1_A23YTGFLT4_1.consolidated.bam.read_coords.ok
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k2,2 -k4,4n /tmp/nxf.XSRTDz90GE/aih-tih-sc-da06ce-R1_A23YTGFLT4_1.consolidated.bam.read_coords > /tmp/nxf.XSRTDz90GE/aih-tih-sc-da06ce-R1_A23YTGFLT4_1.consolidated.bam.read_coords.sort_by_readname
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k3,3n /tmp/nxf.XSRTDz90GE/aih-tih-sc-da06ce-R1_A23YTGFLT4_1.consolidated.bam.frag_coords > /tmp/nxf.XSRTDz90GE/aih-tih-sc-da06ce-R1_A23YTGFLT4_1.consolidated.bam.frag_coords.coord_sorted
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.XSRTDz90GE/fi_workdir/aih-tih-sc-da06ce-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --genome_lib_dir ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.XSRTDz90GE/fi_workdir/aih-tih-sc-da06ce-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter  --genome_lib_dir ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 50 
CMD: cp /tmp/nxf.XSRTDz90GE/fi_workdir/aih-tih-sc-da06ce-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter /tmp/nxf.XSRTDz90GE/aih-tih-sc-da06ce-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter
-done, see /tmp/nxf.XSRTDz90GE/aih-tih-sc-da06ce-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass
EM: Starting log likelihood: -1560.292373
EM: Round [1] log likelihood: -1560.251741
EM: Round [2] log likelihood: -1560.251647
EM: Stopping iterations at round 2 due to insufficient improvement in likelihood.
-total frags in /tmp/nxf.XSRTDz90GE/aih-tih-sc-da06ce-R1_A23YTGFLT4_1_1.fastp.fastq.gz: 296209672
Warning - not locating file: /tmp/nxf.XSRTDz90GE/aih-tih-sc-da06ce-R1_A23YTGFLT4_1.gmap_trinity_GG.fusions.gff3.bed
WARNING, no entry stored in dbm for [ENSG00000253125.1]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
ls: cannot access 'IGV_inputs': No such file or directory