Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/1df1663baebbd37ee71760bb555a15/aih-tih-sc-24ecfe-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/06bc43b7a8e03ba958f3ba94bebbb5/aih-tih-sc-24ecfe-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/3abf6d211585a8bff90d30dfee8e48/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/3abf6d211585a8bff90d30dfee8e48/.command.run
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-24ecfe-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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