Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/ensembl/ctat_ref_annot.interval_list
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/70ea73390d494f815dab3a1fc5117d/aih-tih-sc-3abdf4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/d635941b0f648042cef02f0036aa5b/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/d635941b0f648042cef02f0036aa5b/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/ensembl/ref_annot.gtf.refflat
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/5bf1f747d4063c4602e14db4154f4b/aih-tih-sc-3abdf4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (6 inputs)
/usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory
Jun 03, 2026 7:57:53 PM com.intel.gkl.NativeLibraryLoader load
INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so
[Wed Jun 03 19:57:53 GMT 2026] CollectRnaSeqMetrics --REF_FLAT ref_annot.gtf.refflat --RIBOSOMAL_INTERVALS ctat_ref_annot.interval_list --STRAND_SPECIFICITY NONE --INPUT aih-tih-sc-3abdf4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-3abdf4-R1_A23YTGFLT4_1_rna_metrics.txt --TMP_DIR ./tmp --MINIMUM_LENGTH 500 --RRNA_FRAGMENT_PERCENTAGE 0.8 --METRIC_ACCUMULATION_LEVEL ALL_READS --END_BIAS_BASES 100 --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Wed Jun 03 19:57:53 GMT 2026] Executing as ?@nf-f5d635941b0f648042cef02f0036aa5b-a25f4-w7pqx on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0
WARNING: BAM index file /tmp/nxf.XXXXO0P1AD/aih-tih-sc-3abdf4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai is older than BAM /tmp/nxf.XXXXO0P1AD/aih-tih-sc-3abdf4-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
INFO 2026-06-03 19:57:55 CollectRnaSeqMetrics Loaded 58279 genes.
INFO 2026-06-03 19:58:07 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 12s. Last read position: chr1:1,051,635
INFO 2026-06-03 19:58:21 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 13s. Last read position: chr1:1,517,383
INFO 2026-06-03 19:58:34 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 13s. Last read position: chr1:3,785,111
INFO 2026-06-03 19:58:49 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 15s. Last read position: chr1:8,362,688
INFO 2026-06-03 19:59:03 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 13s. Last read position: chr1:11,213,435
INFO 2026-06-03 19:59:19 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 16s. Last read position: chr1:15,746,871
INFO 2026-06-03 19:59:27 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 8s. Last read position: chr1:16,970,644
INFO 2026-06-03 19:59:42 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 15s. Last read position: chr1:19,419,659
INFO 2026-06-03 19:59:57 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 14s. Last read position: chr1:21,855,319
INFO 2026-06-03 20:00:08 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 11s. Last read position: chr1:23,795,978
INFO 2026-06-03 20:00:20 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 11s. Last read position: chr1:26,170,104
INFO 2026-06-03 20:00:32 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 12s. Last read position: chr1:27,101,804
INFO 2026-06-03 20:00:45 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 13s. Last read position: chr1:29,159,461
INFO 2026-06-03 20:01:00 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 14s. Last read position: chr1:31,908,907
INFO 2026-06-03 20:01:10 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 10s. Last read position: chr1:32,771,175
INFO 2026-06-03 20:01:21 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 10s. Last read position: chr1:35,392,221
INFO 2026-06-03 20:01:36 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 15s. Last read position: chr1:39,334,707
INFO 2026-06-03 20:02:15 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 38s. Last read position: chr1:41,007,369
INFO 2026-06-03 20:02:37 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 22s. Last read position: chr1:43,591,272
INFO 2026-06-03 20:02:56 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 19s. Last read position: chr1:45,013,186
INFO 2026-06-03 20:03:15 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 19s. Last read position: chr1:46,869,352
INFO 2026-06-03 20:03:30 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 14s. Last read position: chr1:54,609,374
INFO 2026-06-03 20:03:47 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 17s. Last read position: chr1:67,424,917
INFO 2026-06-03 20:04:05 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 18s. Last read position: chr1:90,007,460
INFO 2026-06-03 20:04:16 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 10s. Last read position: chr1:108,383,431
INFO 2026-06-03 20:04:28 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 12s. Last read position: chr1:111,765,759
INFO 2026-06-03 20:04:42 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 13s. Last read position: chr1:116,389,437
INFO 2026-06-03 20:04:55 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 13s. Last read position: chr1:120,005,547
INFO 2026-06-03 20:05:00 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 5s. Last read position: chr1:146,077,621
INFO 2026-06-03 20:05:11 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 10s. Last read position: chr1:148,120,576
INFO 2026-06-03 20:05:22 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 11s. Last read position: chr1:149,479,068
INFO 2026-06-03 20:05:24 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 2s. Last read position: chr1:149,851,303
INFO 2026-06-03 20:05:26 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 2s. Last read position: chr1:149,943,981
INFO 2026-06-03 20:05:35 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 8s. Last read position: chr1:150,508,237
INFO 2026-06-03 20:05:47 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 12s. Last read position: chr1:151,002,243
INFO 2026-06-03 20:05:57 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 9s. Last read position: chr1:151,316,384
INFO 2026-06-03 20:06:09 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 11s. Last read position: chr1:151,693,610
INFO 2026-06-03 20:06:19 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 9s. Last read position: chr1:153,991,587
INFO 2026-06-03 20:06:43 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 23s. Last read position: chr1:154,601,241
INFO 2026-06-03 20:07:04 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 21s. Last read position: chr1:155,214,379
INFO 2026-06-03 20:07:26 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 21s. Last read position: chr1:156,018,281
INFO 2026-06-03 20:08:05 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 39s. Last read position: chr1:156,247,508
INFO 2026-06-03 20:08:20 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 14s. Last read position: chr1:158,094,741
INFO 2026-06-03 20:08:29 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 8s. Last read position: chr1:160,240,036
INFO 2026-06-03 20:08:47 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 18s. Last read position: chr1:161,051,400
INFO 2026-06-03 20:09:17 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 29s. Last read position: chr1:161,283,698
INFO 2026-06-03 20:09:25 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 8s. Last read position: chr1:166,849,962
INFO 2026-06-03 20:09:34 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 8s. Last read position: chr1:169,541,201
INFO 2026-06-03 20:09:51 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 17s. Last read position: chr1:171,577,572
INFO 2026-06-03 20:10:06 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 14s. Last read position: chr1:179,112,319
INFO 2026-06-03 20:10:13 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 7s. Last read position: chr1:183,284,739
INFO 2026-06-03 20:10:25 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 11s. Last read position: chr1:186,361,622
INFO 2026-06-03 20:10:37 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 12s. Last read position: chr1:202,729,843
INFO 2026-06-03 20:10:51 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 14s. Last read position: chr1:205,845,292
INFO 2026-06-03 20:10:59 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 8s. Last read position: chr1:219,969,078
INFO 2026-06-03 20:11:10 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 10s. Last read position: chr1:226,065,750
INFO 2026-06-03 20:11:35 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 24s. Last read position: chr1:229,594,942
INFO 2026-06-03 20:11:56 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 20s. Last read position: chr1:244,409,587
INFO 2026-06-03 20:12:14 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 18s. Last read position: chr2:3,498,922
INFO 2026-06-03 20:12:25 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 11s. Last read position: chr2:15,218,899
INFO 2026-06-03 20:12:33 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 7s. Last read position: chr2:20,204,041
INFO 2026-06-03 20:12:45 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 11s. Last read position: chr2:24,710,967
INFO 2026-06-03 20:12:59 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 14s. Last read position: chr2:27,217,460
INFO 2026-06-03 20:13:12 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 12s. Last read position: chr2:28,776,868
INFO 2026-06-03 20:13:19 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 7s. Last read position: chr2:32,916,263
INFO 2026-06-03 20:13:28 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 8s. Last read position: chr2:32,916,402
INFO 2026-06-03 20:13:29 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,446
INFO 2026-06-03 20:13:40 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 10s. Last read position: chr2:42,245,570
INFO 2026-06-03 20:13:53 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:15:58s. Time for last 1,000,000: 13s. Last read position: chr2:45,976,520
INFO 2026-06-03 20:14:06 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:16:11s. Time for last 1,000,000: 13s. Last read position: chr2:54,649,132
INFO 2026-06-03 20:14:25 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:16:30s. Time for last 1,000,000: 18s. Last read position: chr2:61,348,471
INFO 2026-06-03 20:14:44 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:16:49s. Time for last 1,000,000: 18s. Last read position: chr2:69,350,129
INFO 2026-06-03 20:15:15 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 30s. Last read position: chr2:71,077,626
INFO 2026-06-03 20:15:29 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 13s. Last read position: chr2:74,047,130
INFO 2026-06-03 20:15:42 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 13s. Last read position: chr2:74,475,290
INFO 2026-06-03 20:15:52 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 9s. Last read position: chr2:85,611,565
INFO 2026-06-03 20:16:02 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 10s. Last read position: chr2:95,958,591
INFO 2026-06-03 20:16:13 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 10s. Last read position: chr2:98,555,656
INFO 2026-06-03 20:16:25 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 12s. Last read position: chr2:106,423,460
INFO 2026-06-03 20:16:30 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 5s. Last read position: chr2:110,798,658
INFO 2026-06-03 20:16:41 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 10s. Last read position: chr2:119,368,296
INFO 2026-06-03 20:16:53 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 11s. Last read position: chr2:131,520,133
INFO 2026-06-03 20:17:09 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 15s. Last read position: chr2:159,747,851
INFO 2026-06-03 20:17:23 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 14s. Last read position: chr2:177,232,392
INFO 2026-06-03 20:17:49 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 25s. Last read position: chr2:197,420,539
INFO 2026-06-03 20:18:12 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 22s. Last read position: chr2:207,768,561
INFO 2026-06-03 20:18:39 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 27s. Last read position: chr2:216,694,661
INFO 2026-06-03 20:18:53 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 14s. Last read position: chr2:222,521,802
INFO 2026-06-03 20:19:14 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 20s. Last read position: chr2:233,468,543
INFO 2026-06-03 20:19:32 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:21:37s. Time for last 1,000,000: 18s. Last read position: chr2:241,229,554
INFO 2026-06-03 20:20:02 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:22:07s. Time for last 1,000,000: 30s. Last read position: chr3:9,743,829
INFO 2026-06-03 20:20:18 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:22:23s. Time for last 1,000,000: 16s. Last read position: chr3:12,416,807
INFO 2026-06-03 20:20:32 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:22:37s. Time for last 1,000,000: 13s. Last read position: chr3:15,023,311
INFO 2026-06-03 20:20:43 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:22:48s. Time for last 1,000,000: 10s. Last read position: chr3:25,615,562
INFO 2026-06-03 20:20:57 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:23:02s. Time for last 1,000,000: 14s. Last read position: chr3:32,570,885
INFO 2026-06-03 20:21:15 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:23:20s. Time for last 1,000,000: 17s. Last read position: chr3:38,140,509
INFO 2026-06-03 20:21:40 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:23:44s. Time for last 1,000,000: 24s. Last read position: chr3:42,160,453
INFO 2026-06-03 20:21:57 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:24:02s. Time for last 1,000,000: 17s. Last read position: chr3:44,642,933
INFO 2026-06-03 20:22:11 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:24:16s. Time for last 1,000,000: 14s. Last read position: chr3:47,004,130
INFO 2026-06-03 20:22:28 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:24:32s. Time for last 1,000,000: 16s. Last read position: chr3:47,818,054
INFO 2026-06-03 20:22:47 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:24:51s. Time for last 1,000,000: 18s. Last read position: chr3:48,501,217
INFO 2026-06-03 20:23:06 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:25:10s. Time for last 1,000,000: 19s. Last read position: chr3:49,015,044
INFO 2026-06-03 20:23:26 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:25:30s. Time for last 1,000,000: 19s. Last read position: chr3:49,804,324
INFO 2026-06-03 20:23:37 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:25:42s. Time for last 1,000,000: 11s. Last read position: chr3:51,937,678
INFO 2026-06-03 20:23:52 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:25:57s. Time for last 1,000,000: 14s. Last read position: chr3:52,706,156
INFO 2026-06-03 20:24:12 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:26:16s. Time for last 1,000,000: 19s. Last read position: chr3:58,168,621
INFO 2026-06-03 20:24:28 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:26:32s. Time for last 1,000,000: 15s. Last read position: chr3:98,593,067
INFO 2026-06-03 20:24:43 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:26:48s. Time for last 1,000,000: 15s. Last read position: chr3:113,885,907
INFO 2026-06-03 20:24:54 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:26:58s. Time for last 1,000,000: 10s. Last read position: chr3:123,618,652
INFO 2026-06-03 20:25:06 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:27:10s. Time for last 1,000,000: 12s. Last read position: chr3:127,605,122
INFO 2026-06-03 20:25:16 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:27:21s. Time for last 1,000,000: 10s. Last read position: chr3:129,437,071
INFO 2026-06-03 20:25:33 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:27:37s. Time for last 1,000,000: 16s. Last read position: chr3:139,358,229
INFO 2026-06-03 20:25:46 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:27:50s. Time for last 1,000,000: 13s. Last read position: chr3:150,546,093
INFO 2026-06-03 20:25:59 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:28:04s. Time for last 1,000,000: 13s. Last read position: chr3:169,483,691
INFO 2026-06-03 20:26:14 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:28:19s. Time for last 1,000,000: 14s. Last read position: chr3:183,064,598
INFO 2026-06-03 20:26:35 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:28:40s. Time for last 1,000,000: 21s. Last read position: chr3:184,321,984
INFO 2026-06-03 20:27:02 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:29:07s. Time for last 1,000,000: 26s. Last read position: chr3:188,760,240
INFO 2026-06-03 20:27:13 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:29:18s. Time for last 1,000,000: 10s. Last read position: chr3:195,864,138
INFO 2026-06-03 20:27:39 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:29:44s. Time for last 1,000,000: 26s. Last read position: chr4:444,313
INFO 2026-06-03 20:27:53 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:29:58s. Time for last 1,000,000: 14s. Last read position: chr4:1,728,489
INFO 2026-06-03 20:28:10 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:30:15s. Time for last 1,000,000: 17s. Last read position: chr4:2,693,612
INFO 2026-06-03 20:28:30 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:30:35s. Time for last 1,000,000: 19s. Last read position: chr4:6,716,712
INFO 2026-06-03 20:28:37 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:30:42s. Time for last 1,000,000: 7s. Last read position: chr4:13,600,159
INFO 2026-06-03 20:28:49 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:30:54s. Time for last 1,000,000: 12s. Last read position: chr4:39,218,080
INFO 2026-06-03 20:29:05 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:31:09s. Time for last 1,000,000: 15s. Last read position: chr4:54,263,830
INFO 2026-06-03 20:29:15 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:31:20s. Time for last 1,000,000: 10s. Last read position: chr4:73,091,475
INFO 2026-06-03 20:29:29 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:31:34s. Time for last 1,000,000: 14s. Last read position: chr4:82,428,152
INFO 2026-06-03 20:30:23 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:32:28s. Time for last 1,000,000: 53s. Last read position: chr4:87,134,474
INFO 2026-06-03 20:30:36 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:32:40s. Time for last 1,000,000: 12s. Last read position: chr4:106,324,991
INFO 2026-06-03 20:30:55 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:33:00s. Time for last 1,000,000: 19s. Last read position: chr4:128,287,678
INFO 2026-06-03 20:31:04 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:33:09s. Time for last 1,000,000: 9s. Last read position: chr4:150,256,087
INFO 2026-06-03 20:31:27 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:33:31s. Time for last 1,000,000: 22s. Last read position: chr4:174,262,950
INFO 2026-06-03 20:31:39 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:33:43s. Time for last 1,000,000: 12s. Last read position: chr5:453,788
INFO 2026-06-03 20:31:48 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:33:53s. Time for last 1,000,000: 9s. Last read position: chr5:10,407,127
INFO 2026-06-03 20:32:11 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:34:16s. Time for last 1,000,000: 22s. Last read position: chr5:32,048,576
INFO 2026-06-03 20:32:26 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:34:30s. Time for last 1,000,000: 14s. Last read position: chr5:43,535,622
INFO 2026-06-03 20:32:45 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:34:49s. Time for last 1,000,000: 18s. Last read position: chr5:67,166,421
INFO 2026-06-03 20:32:57 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:35:02s. Time for last 1,000,000: 12s. Last read position: chr5:78,015,500
INFO 2026-06-03 20:33:19 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:35:24s. Time for last 1,000,000: 22s. Last read position: chr5:96,767,452
INFO 2026-06-03 20:33:37 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:35:41s. Time for last 1,000,000: 17s. Last read position: chr5:128,392,069
INFO 2026-06-03 20:33:49 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:35:53s. Time for last 1,000,000: 12s. Last read position: chr5:135,571,285
INFO 2026-06-03 20:34:06 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:36:10s. Time for last 1,000,000: 16s. Last read position: chr5:140,632,864
INFO 2026-06-03 20:34:13 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:36:18s. Time for last 1,000,000: 7s. Last read position: chr5:141,863,559
INFO 2026-06-03 20:34:27 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:36:31s. Time for last 1,000,000: 13s. Last read position: chr5:150,375,403
INFO 2026-06-03 20:34:42 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:36:47s. Time for last 1,000,000: 15s. Last read position: chr5:157,743,954
INFO 2026-06-03 20:34:59 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:37:04s. Time for last 1,000,000: 17s. Last read position: chr5:175,492,246
INFO 2026-06-03 20:35:11 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:37:15s. Time for last 1,000,000: 11s. Last read position: chr5:178,712,647
INFO 2026-06-03 20:35:32 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:37:36s. Time for last 1,000,000: 20s. Last read position: chr5:179,865,281
INFO 2026-06-03 20:35:40 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:37:44s. Time for last 1,000,000: 8s. Last read position: chr6:2,766,114
INFO 2026-06-03 20:35:50 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:37:55s. Time for last 1,000,000: 10s. Last read position: chr6:10,723,221
INFO 2026-06-03 20:36:01 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:38:06s. Time for last 1,000,000: 10s. Last read position: chr6:20,490,221
INFO 2026-06-03 20:36:06 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:38:11s. Time for last 1,000,000: 5s. Last read position: chr6:26,183,930
INFO 2026-06-03 20:36:10 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:38:15s. Time for last 1,000,000: 3s. Last read position: chr6:29,888,675
INFO 2026-06-03 20:36:20 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:38:25s. Time for last 1,000,000: 9s. Last read position: chr6:30,892,385
INFO 2026-06-03 20:36:34 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:38:39s. Time for last 1,000,000: 14s. Last read position: chr6:31,623,831
INFO 2026-06-03 20:36:51 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:38:56s. Time for last 1,000,000: 16s. Last read position: chr6:31,816,230
INFO 2026-06-03 20:37:01 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:39:05s. Time for last 1,000,000: 9s. Last read position: chr6:32,119,088
INFO 2026-06-03 20:37:13 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:39:18s. Time for last 1,000,000: 12s. Last read position: chr6:33,304,439
INFO 2026-06-03 20:37:23 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:39:28s. Time for last 1,000,000: 10s. Last read position: chr6:35,086,972
INFO 2026-06-03 20:37:31 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:39:36s. Time for last 1,000,000: 8s. Last read position: chr6:41,771,298
INFO 2026-06-03 20:37:42 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:39:46s. Time for last 1,000,000: 10s. Last read position: chr6:43,432,628
INFO 2026-06-03 20:37:55 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:39:59s. Time for last 1,000,000: 13s. Last read position: chr6:47,234,770
INFO 2026-06-03 20:38:03 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:40:07s. Time for last 1,000,000: 7s. Last read position: chr6:56,459,039
INFO 2026-06-03 20:38:46 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:40:50s. Time for last 1,000,000: 42s. Last read position: chr6:79,017,465
INFO 2026-06-03 20:38:58 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:41:03s. Time for last 1,000,000: 12s. Last read position: chr6:99,408,230
INFO 2026-06-03 20:39:08 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:41:13s. Time for last 1,000,000: 9s. Last read position: chr6:111,259,663
INFO 2026-06-03 20:39:16 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:41:21s. Time for last 1,000,000: 7s. Last read position: chr6:125,220,150
INFO 2026-06-03 20:39:36 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:41:41s. Time for last 1,000,000: 20s. Last read position: chr6:138,334,618
INFO 2026-06-03 20:39:46 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:41:50s. Time for last 1,000,000: 9s. Last read position: chr6:149,378,954
INFO 2026-06-03 20:39:58 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:42:03s. Time for last 1,000,000: 12s. Last read position: chr6:156,829,266
INFO 2026-06-03 20:40:11 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:42:15s. Time for last 1,000,000: 12s. Last read position: chr6:158,787,097
INFO 2026-06-03 20:40:29 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:42:34s. Time for last 1,000,000: 18s. Last read position: chr6:170,535,346
INFO 2026-06-03 20:40:42 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:42:47s. Time for last 1,000,000: 12s. Last read position: chr7:2,647,477
INFO 2026-06-03 20:40:53 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:42:57s. Time for last 1,000,000: 10s. Last read position: chr7:5,394,487
INFO 2026-06-03 20:41:05 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:43:09s. Time for last 1,000,000: 11s. Last read position: chr7:6,652,486
INFO 2026-06-03 20:41:14 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:43:19s. Time for last 1,000,000: 9s. Last read position: chr7:23,507,460
INFO 2026-06-03 20:41:40 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:43:44s. Time for last 1,000,000: 25s. Last read position: chr7:39,013,547
INFO 2026-06-03 20:41:52 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 00:43:56s. Time for last 1,000,000: 12s. Last read position: chr7:44,799,798
INFO 2026-06-03 20:42:03 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 00:44:07s. Time for last 1,000,000: 11s. Last read position: chr7:55,165,286
INFO 2026-06-03 20:42:15 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 00:44:20s. Time for last 1,000,000: 12s. Last read position: chr7:72,868,862
INFO 2026-06-03 20:42:19 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 00:44:24s. Time for last 1,000,000: 3s. Last read position: chr7:73,508,362
INFO 2026-06-03 20:42:29 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 00:44:33s. Time for last 1,000,000: 9s. Last read position: chr7:75,108,988
INFO 2026-06-03 20:42:36 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 00:44:41s. Time for last 1,000,000: 7s. Last read position: chr7:76,057,466
INFO 2026-06-03 20:42:44 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 00:44:48s. Time for last 1,000,000: 7s. Last read position: chr7:76,990,270
INFO 2026-06-03 20:43:06 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 00:45:10s. Time for last 1,000,000: 21s. Last read position: chr7:92,062,400
INFO 2026-06-03 20:43:45 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 00:45:49s. Time for last 1,000,000: 38s. Last read position: chr7:98,961,329
INFO 2026-06-03 20:44:02 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 00:46:07s. Time for last 1,000,000: 17s. Last read position: chr7:100,156,910
INFO 2026-06-03 20:44:13 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 00:46:18s. Time for last 1,000,000: 10s. Last read position: chr7:100,805,574
INFO 2026-06-03 20:44:27 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 00:46:32s. Time for last 1,000,000: 14s. Last read position: chr7:102,433,648
INFO 2026-06-03 20:44:31 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 00:46:35s. Time for last 1,000,000: 3s. Last read position: chr7:102,659,978
INFO 2026-06-03 20:44:51 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 00:46:56s. Time for last 1,000,000: 20s. Last read position: chr7:116,783,435
INFO 2026-06-03 20:45:02 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 00:47:07s. Time for last 1,000,000: 10s. Last read position: chr7:128,769,066
INFO 2026-06-03 20:45:13 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 00:47:18s. Time for last 1,000,000: 11s. Last read position: chr7:137,251,251
INFO 2026-06-03 20:45:20 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 00:47:25s. Time for last 1,000,000: 7s. Last read position: chr7:138,861,242
INFO 2026-06-03 20:45:36 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 00:47:41s. Time for last 1,000,000: 15s. Last read position: chr7:141,074,447
INFO 2026-06-03 20:45:43 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 00:47:48s. Time for last 1,000,000: 7s. Last read position: chr7:144,362,973
INFO 2026-06-03 20:45:51 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 00:47:56s. Time for last 1,000,000: 8s. Last read position: chr7:150,372,618
INFO 2026-06-03 20:46:10 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 00:48:15s. Time for last 1,000,000: 18s. Last read position: chr7:152,182,047
INFO 2026-06-03 20:46:26 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 00:48:31s. Time for last 1,000,000: 15s. Last read position: chr8:8,702,749
INFO 2026-06-03 20:46:49 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 00:48:54s. Time for last 1,000,000: 23s. Last read position: chr8:18,872,322
INFO 2026-06-03 20:47:02 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 00:49:07s. Time for last 1,000,000: 13s. Last read position: chr8:23,368,271
INFO 2026-06-03 20:47:15 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 00:49:19s. Time for last 1,000,000: 12s. Last read position: chr8:32,742,668
INFO 2026-06-03 20:47:20 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 00:49:25s. Time for last 1,000,000: 5s. Last read position: chr8:38,105,606
INFO 2026-06-03 20:47:33 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 00:49:38s. Time for last 1,000,000: 12s. Last read position: chr8:38,348,063
INFO 2026-06-03 20:47:57 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 00:50:02s. Time for last 1,000,000: 23s. Last read position: chr8:38,820,597
INFO 2026-06-03 20:48:26 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 00:50:30s. Time for last 1,000,000: 28s. Last read position: chr8:41,933,144
INFO 2026-06-03 20:48:45 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 00:50:49s. Time for last 1,000,000: 19s. Last read position: chr8:48,043,107
INFO 2026-06-03 20:49:01 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 00:51:06s. Time for last 1,000,000: 16s. Last read position: chr8:67,257,756
INFO 2026-06-03 20:49:10 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 00:51:15s. Time for last 1,000,000: 8s. Last read position: chr8:85,397,300
INFO 2026-06-03 20:49:23 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 00:51:27s. Time for last 1,000,000: 12s. Last read position: chr8:99,875,561
INFO 2026-06-03 20:50:08 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 00:52:13s. Time for last 1,000,000: 45s. Last read position: chr8:100,721,420
INFO 2026-06-03 20:50:29 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 00:52:33s. Time for last 1,000,000: 20s. Last read position: chr8:119,791,386
INFO 2026-06-03 20:50:45 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 00:52:50s. Time for last 1,000,000: 16s. Last read position: chr8:135,548,828
INFO 2026-06-03 20:51:01 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 00:53:05s. Time for last 1,000,000: 15s. Last read position: chr8:143,559,822
INFO 2026-06-03 20:51:18 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 00:53:22s. Time for last 1,000,000: 16s. Last read position: chr8:143,808,778
INFO 2026-06-03 20:51:23 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 00:53:27s. Time for last 1,000,000: 5s. Last read position: chr8:143,859,718
INFO 2026-06-03 20:51:24 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 00:53:28s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,487
INFO 2026-06-03 20:51:25 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 00:53:30s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,117
INFO 2026-06-03 20:51:26 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 00:53:31s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,828
INFO 2026-06-03 20:51:27 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 00:53:32s. Time for last 1,000,000: 0s. Last read position: chr8:143,867,154
INFO 2026-06-03 20:51:34 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 00:53:38s. Time for last 1,000,000: 6s. Last read position: chr8:143,927,563
INFO 2026-06-03 20:51:51 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 00:53:56s. Time for last 1,000,000: 17s. Last read position: chr8:144,317,274
INFO 2026-06-03 20:52:04 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 00:54:08s. Time for last 1,000,000: 12s. Last read position: chr8:144,524,470
INFO 2026-06-03 20:52:18 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 00:54:22s. Time for last 1,000,000: 13s. Last read position: chr9:5,801,302
INFO 2026-06-03 20:52:33 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 00:54:38s. Time for last 1,000,000: 15s. Last read position: chr9:26,917,121
INFO 2026-06-03 20:52:42 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 00:54:47s. Time for last 1,000,000: 9s. Last read position: chr9:35,057,171
INFO 2026-06-03 20:52:56 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 00:55:01s. Time for last 1,000,000: 13s. Last read position: chr9:37,800,985
INFO 2026-06-03 20:53:12 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 00:55:17s. Time for last 1,000,000: 16s. Last read position: chr9:77,280,180
INFO 2026-06-03 20:53:31 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 00:55:36s. Time for last 1,000,000: 18s. Last read position: chr9:87,707,130
INFO 2026-06-03 20:53:44 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 00:55:48s. Time for last 1,000,000: 12s. Last read position: chr9:93,516,121
INFO 2026-06-03 20:53:52 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 00:55:56s. Time for last 1,000,000: 8s. Last read position: chr9:100,297,983
INFO 2026-06-03 20:54:06 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 00:56:11s. Time for last 1,000,000: 14s. Last read position: chr9:112,157,570
INFO 2026-06-03 20:54:17 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 00:56:22s. Time for last 1,000,000: 11s. Last read position: chr9:120,923,723
INFO 2026-06-03 20:54:31 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 00:56:35s. Time for last 1,000,000: 13s. Last read position: chr9:126,833,629
INFO 2026-06-03 20:54:49 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 00:56:54s. Time for last 1,000,000: 18s. Last read position: chr9:128,260,668
INFO 2026-06-03 20:55:07 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 00:57:11s. Time for last 1,000,000: 17s. Last read position: chr9:129,008,716
INFO 2026-06-03 20:55:18 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 00:57:22s. Time for last 1,000,000: 11s. Last read position: chr9:130,884,792
INFO 2026-06-03 20:55:29 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 00:57:34s. Time for last 1,000,000: 11s. Last read position: chr9:132,902,636
INFO 2026-06-03 20:55:40 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 00:57:44s. Time for last 1,000,000: 10s. Last read position: chr9:134,417,217
INFO 2026-06-03 20:55:53 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 00:57:58s. Time for last 1,000,000: 13s. Last read position: chr9:136,502,070
INFO 2026-06-03 20:56:07 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 00:58:11s. Time for last 1,000,000: 13s. Last read position: chr9:137,215,947
INFO 2026-06-03 20:56:20 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 00:58:24s. Time for last 1,000,000: 13s. Last read position: chr10:3,134,488
INFO 2026-06-03 20:56:31 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 00:58:36s. Time for last 1,000,000: 11s. Last read position: chr10:8,058,359
INFO 2026-06-03 20:56:40 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 00:58:45s. Time for last 1,000,000: 9s. Last read position: chr10:21,725,487
INFO 2026-06-03 20:57:00 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 00:59:05s. Time for last 1,000,000: 19s. Last read position: chr10:29,554,806
INFO 2026-06-03 20:57:14 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 00:59:19s. Time for last 1,000,000: 14s. Last read position: chr10:43,386,826
INFO 2026-06-03 20:57:20 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 00:59:24s. Time for last 1,000,000: 5s. Last read position: chr10:47,762,602
INFO 2026-06-03 20:57:30 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 00:59:34s. Time for last 1,000,000: 10s. Last read position: chr10:67,990,990
INFO 2026-06-03 20:57:44 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 00:59:48s. Time for last 1,000,000: 14s. Last read position: chr10:71,752,977
INFO 2026-06-03 20:58:03 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 01:00:08s. Time for last 1,000,000: 19s. Last read position: chr10:75,029,462
INFO 2026-06-03 20:58:18 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 01:00:22s. Time for last 1,000,000: 14s. Last read position: chr10:80,169,054
INFO 2026-06-03 20:58:25 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 01:00:30s. Time for last 1,000,000: 7s. Last read position: chr10:87,230,980
INFO 2026-06-03 20:58:37 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 01:00:42s. Time for last 1,000,000: 11s. Last read position: chr10:95,238,032
INFO 2026-06-03 20:58:50 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 01:00:55s. Time for last 1,000,000: 12s. Last read position: chr10:100,529,439
INFO 2026-06-03 20:59:11 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 01:01:15s. Time for last 1,000,000: 20s. Last read position: chr10:102,744,020
INFO 2026-06-03 20:59:24 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 01:01:28s. Time for last 1,000,000: 13s. Last read position: chr10:114,843,700
INFO 2026-06-03 20:59:37 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 01:01:41s. Time for last 1,000,000: 12s. Last read position: chr10:124,682,230
INFO 2026-06-03 20:59:44 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 01:01:48s. Time for last 1,000,000: 6s. Last read position: chr10:133,289,843
INFO 2026-06-03 20:59:54 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 01:01:59s. Time for last 1,000,000: 10s. Last read position: chr11:614,865
INFO 2026-06-03 21:00:09 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 01:02:14s. Time for last 1,000,000: 14s. Last read position: chr11:1,835,416
INFO 2026-06-03 21:00:23 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 01:02:27s. Time for last 1,000,000: 13s. Last read position: chr11:6,601,533
INFO 2026-06-03 21:00:42 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 01:02:47s. Time for last 1,000,000: 19s. Last read position: chr11:10,802,295
INFO 2026-06-03 21:00:57 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 01:03:01s. Time for last 1,000,000: 14s. Last read position: chr11:27,472,692
INFO 2026-06-03 21:01:11 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 01:03:16s. Time for last 1,000,000: 14s. Last read position: chr11:46,381,734
INFO 2026-06-03 21:01:25 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 01:03:29s. Time for last 1,000,000: 13s. Last read position: chr11:57,310,320
INFO 2026-06-03 21:01:48 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 01:03:52s. Time for last 1,000,000: 23s. Last read position: chr11:59,182,329
INFO 2026-06-03 21:02:04 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 01:04:08s. Time for last 1,000,000: 16s. Last read position: chr11:61,416,109
INFO 2026-06-03 21:02:12 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 01:04:17s. Time for last 1,000,000: 8s. Last read position: chr11:62,559,750
INFO 2026-06-03 21:02:26 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 01:04:30s. Time for last 1,000,000: 13s. Last read position: chr11:62,888,582
INFO 2026-06-03 21:02:38 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 01:04:43s. Time for last 1,000,000: 12s. Last read position: chr11:64,317,294
INFO 2026-06-03 21:02:51 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 01:04:55s. Time for last 1,000,000: 12s. Last read position: chr11:65,111,383
INFO 2026-06-03 21:03:06 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 01:05:11s. Time for last 1,000,000: 15s. Last read position: chr11:65,582,080
INFO 2026-06-03 21:03:18 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 01:05:23s. Time for last 1,000,000: 11s. Last read position: chr11:65,780,074
INFO 2026-06-03 21:03:31 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 01:05:36s. Time for last 1,000,000: 13s. Last read position: chr11:66,616,822
INFO 2026-06-03 21:03:47 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 01:05:51s. Time for last 1,000,000: 15s. Last read position: chr11:67,395,941
INFO 2026-06-03 21:03:58 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 01:06:02s. Time for last 1,000,000: 11s. Last read position: chr11:68,416,371
INFO 2026-06-03 21:04:14 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 01:06:18s. Time for last 1,000,000: 15s. Last read position: chr11:72,003,936
INFO 2026-06-03 21:04:41 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 01:06:46s. Time for last 1,000,000: 27s. Last read position: chr11:73,296,565
INFO 2026-06-03 21:04:57 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 01:07:02s. Time for last 1,000,000: 15s. Last read position: chr11:77,084,931
INFO 2026-06-03 21:05:12 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 01:07:17s. Time for last 1,000,000: 14s. Last read position: chr11:92,844,279
INFO 2026-06-03 21:05:24 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 01:07:28s. Time for last 1,000,000: 11s. Last read position: chr11:102,527,559
INFO 2026-06-03 21:05:39 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 01:07:43s. Time for last 1,000,000: 14s. Last read position: chr11:117,397,260
INFO 2026-06-03 21:05:50 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 01:07:54s. Time for last 1,000,000: 10s. Last read position: chr11:118,956,884
INFO 2026-06-03 21:06:01 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 01:08:05s. Time for last 1,000,000: 11s. Last read position: chr11:120,137,806
INFO 2026-06-03 21:06:14 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 01:08:19s. Time for last 1,000,000: 13s. Last read position: chr11:124,767,485
INFO 2026-06-03 21:06:29 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 01:08:34s. Time for last 1,000,000: 15s. Last read position: chr11:130,141,544
INFO 2026-06-03 21:06:45 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 01:08:49s. Time for last 1,000,000: 15s. Last read position: chr12:2,803,164
INFO 2026-06-03 21:06:59 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 01:09:03s. Time for last 1,000,000: 14s. Last read position: chr12:6,573,203
INFO 2026-06-03 21:07:30 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 01:09:35s. Time for last 1,000,000: 31s. Last read position: chr12:6,956,507
INFO 2026-06-03 21:07:41 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 01:09:46s. Time for last 1,000,000: 11s. Last read position: chr12:10,723,028
INFO 2026-06-03 21:07:52 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 01:09:56s. Time for last 1,000,000: 10s. Last read position: chr12:21,638,430
INFO 2026-06-03 21:08:07 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 01:10:11s. Time for last 1,000,000: 14s. Last read position: chr12:45,924,855
INFO 2026-06-03 21:08:22 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 01:10:27s. Time for last 1,000,000: 15s. Last read position: chr12:49,040,435
INFO 2026-06-03 21:08:33 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 01:10:37s. Time for last 1,000,000: 10s. Last read position: chr12:49,759,233
INFO 2026-06-03 21:08:43 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 01:10:48s. Time for last 1,000,000: 10s. Last read position: chr12:52,245,581
INFO 2026-06-03 21:08:57 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 01:11:02s. Time for last 1,000,000: 14s. Last read position: chr12:53,383,204
INFO 2026-06-03 21:09:21 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 01:11:26s. Time for last 1,000,000: 23s. Last read position: chr12:55,413,879
INFO 2026-06-03 21:09:37 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 01:11:42s. Time for last 1,000,000: 16s. Last read position: chr12:56,164,321
INFO 2026-06-03 21:09:56 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 01:12:01s. Time for last 1,000,000: 18s. Last read position: chr12:56,720,194
INFO 2026-06-03 21:10:17 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 01:12:22s. Time for last 1,000,000: 20s. Last read position: chr12:57,254,878
INFO 2026-06-03 21:10:34 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 01:12:38s. Time for last 1,000,000: 16s. Last read position: chr12:66,153,402
INFO 2026-06-03 21:10:48 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 01:12:53s. Time for last 1,000,000: 14s. Last read position: chr12:82,756,539
INFO 2026-06-03 21:11:01 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 01:13:06s. Time for last 1,000,000: 12s. Last read position: chr12:101,697,963
INFO 2026-06-03 21:11:16 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 01:13:21s. Time for last 1,000,000: 15s. Last read position: chr12:110,327,582
INFO 2026-06-03 21:11:36 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 01:13:41s. Time for last 1,000,000: 19s. Last read position: chr12:112,941,632
INFO 2026-06-03 21:11:50 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 01:13:55s. Time for last 1,000,000: 13s. Last read position: chr12:118,034,167
INFO 2026-06-03 21:12:04 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 01:14:09s. Time for last 1,000,000: 14s. Last read position: chr12:120,534,827
INFO 2026-06-03 21:12:18 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 01:14:23s. Time for last 1,000,000: 13s. Last read position: chr12:122,702,286
INFO 2026-06-03 21:12:34 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 01:14:39s. Time for last 1,000,000: 16s. Last read position: chr12:124,993,992
INFO 2026-06-03 21:12:43 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 01:14:47s. Time for last 1,000,000: 8s. Last read position: chr12:132,582,059
INFO 2026-06-03 21:12:56 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 01:15:01s. Time for last 1,000,000: 13s. Last read position: chr13:20,059,445
INFO 2026-06-03 21:13:07 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 01:15:11s. Time for last 1,000,000: 10s. Last read position: chr13:33,053,899
INFO 2026-06-03 21:13:17 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 01:15:22s. Time for last 1,000,000: 10s. Last read position: chr13:54,408,886
INFO 2026-06-03 21:13:31 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 01:15:35s. Time for last 1,000,000: 13s. Last read position: chr13:98,143,393
INFO 2026-06-03 21:13:51 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 01:15:55s. Time for last 1,000,000: 20s. Last read position: chr13:109,783,822
INFO 2026-06-03 21:14:07 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 01:16:12s. Time for last 1,000,000: 16s. Last read position: chr13:113,823,382
INFO 2026-06-03 21:14:29 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 01:16:34s. Time for last 1,000,000: 22s. Last read position: chr14:21,523,628
INFO 2026-06-03 21:14:39 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 01:16:43s. Time for last 1,000,000: 9s. Last read position: chr14:23,557,218
INFO 2026-06-03 21:14:55 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 01:17:00s. Time for last 1,000,000: 16s. Last read position: chr14:24,432,290
INFO 2026-06-03 21:15:10 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 01:17:15s. Time for last 1,000,000: 15s. Last read position: chr14:49,585,969
INFO 2026-06-03 21:15:19 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 01:17:23s. Time for last 1,000,000: 8s. Last read position: chr14:55,636,446
INFO 2026-06-03 21:15:57 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 01:18:01s. Time for last 1,000,000: 37s. Last read position: chr14:65,077,974
INFO 2026-06-03 21:16:12 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 01:18:16s. Time for last 1,000,000: 14s. Last read position: chr14:73,284,165
INFO 2026-06-03 21:16:23 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 01:18:27s. Time for last 1,000,000: 11s. Last read position: chr14:77,025,739
INFO 2026-06-03 21:16:35 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 01:18:39s. Time for last 1,000,000: 11s. Last read position: chr14:92,116,196
INFO 2026-06-03 21:17:08 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 01:19:13s. Time for last 1,000,000: 33s. Last read position: chr14:102,008,327
INFO 2026-06-03 21:18:36 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 01:20:41s. Time for last 1,000,000: 88s. Last read position: chr14:103,492,024
INFO 2026-06-03 21:19:00 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 01:21:05s. Time for last 1,000,000: 23s. Last read position: chr14:105,379,745
INFO 2026-06-03 21:19:45 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 01:21:50s. Time for last 1,000,000: 45s. Last read position: chr15:29,716,701
INFO 2026-06-03 21:20:00 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 01:22:04s. Time for last 1,000,000: 14s. Last read position: chr15:40,036,989
INFO 2026-06-03 21:20:17 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 01:22:22s. Time for last 1,000,000: 17s. Last read position: chr15:41,835,087
INFO 2026-06-03 21:20:36 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 01:22:40s. Time for last 1,000,000: 18s. Last read position: chr15:43,809,771
INFO 2026-06-03 21:20:58 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 01:23:03s. Time for last 1,000,000: 22s. Last read position: chr15:57,063,805
INFO 2026-06-03 21:21:32 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 01:23:36s. Time for last 1,000,000: 33s. Last read position: chr15:64,160,123
INFO 2026-06-03 21:21:50 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 01:23:55s. Time for last 1,000,000: 18s. Last read position: chr15:72,207,156
INFO 2026-06-03 21:22:15 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 01:24:20s. Time for last 1,000,000: 24s. Last read position: chr15:75,048,283
INFO 2026-06-03 21:22:37 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 01:24:41s. Time for last 1,000,000: 21s. Last read position: chr15:78,922,086
INFO 2026-06-03 21:23:06 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 01:25:11s. Time for last 1,000,000: 29s. Last read position: chr15:85,194,870
INFO 2026-06-03 21:23:32 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 01:25:37s. Time for last 1,000,000: 25s. Last read position: chr15:90,948,664
INFO 2026-06-03 21:23:53 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 01:25:57s. Time for last 1,000,000: 20s. Last read position: chr16:502,959
INFO 2026-06-03 21:24:20 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 01:26:25s. Time for last 1,000,000: 27s. Last read position: chr16:1,592,180
INFO 2026-06-03 21:25:13 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 01:27:17s. Time for last 1,000,000: 52s. Last read position: chr16:2,135,510
INFO 2026-06-03 21:25:38 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 01:27:43s. Time for last 1,000,000: 25s. Last read position: chr16:2,767,570
INFO 2026-06-03 21:25:59 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 01:28:04s. Time for last 1,000,000: 21s. Last read position: chr16:4,341,387
INFO 2026-06-03 21:26:22 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 01:28:27s. Time for last 1,000,000: 23s. Last read position: chr16:8,902,107
INFO 2026-06-03 21:26:46 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 01:28:51s. Time for last 1,000,000: 23s. Last read position: chr16:11,927,779
INFO 2026-06-03 21:27:02 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 01:29:06s. Time for last 1,000,000: 15s. Last read position: chr16:14,921,313
INFO 2026-06-03 21:27:21 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 01:29:26s. Time for last 1,000,000: 19s. Last read position: chr16:15,137,342
INFO 2026-06-03 21:27:41 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 01:29:45s. Time for last 1,000,000: 19s. Last read position: chr16:16,323,172
INFO 2026-06-03 21:27:45 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 01:29:50s. Time for last 1,000,000: 4s. Last read position: chr16:18,318,230
INFO 2026-06-03 21:27:51 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 01:29:55s. Time for last 1,000,000: 5s. Last read position: chr16:18,401,603
INFO 2026-06-03 21:28:09 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 01:30:14s. Time for last 1,000,000: 18s. Last read position: chr16:19,537,076
INFO 2026-06-03 21:28:19 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 01:30:24s. Time for last 1,000,000: 10s. Last read position: chr16:21,405,030
INFO 2026-06-03 21:28:26 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 01:30:30s. Time for last 1,000,000: 6s. Last read position: chr16:21,836,967
INFO 2026-06-03 21:28:33 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 01:30:38s. Time for last 1,000,000: 7s. Last read position: chr16:22,485,948
INFO 2026-06-03 21:28:42 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 01:30:47s. Time for last 1,000,000: 8s. Last read position: chr16:22,535,284
INFO 2026-06-03 21:28:48 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 01:30:52s. Time for last 1,000,000: 5s. Last read position: chr16:23,687,549
INFO 2026-06-03 21:29:00 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 01:31:04s. Time for last 1,000,000: 11s. Last read position: chr16:28,403,529
INFO 2026-06-03 21:29:30 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 01:31:34s. Time for last 1,000,000: 30s. Last read position: chr16:28,843,736
INFO 2026-06-03 21:29:40 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 01:31:44s. Time for last 1,000,000: 9s. Last read position: chr16:29,384,002
INFO 2026-06-03 21:29:43 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 01:31:47s. Time for last 1,000,000: 2s. Last read position: chr16:29,541,603
INFO 2026-06-03 21:29:52 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 01:31:56s. Time for last 1,000,000: 9s. Last read position: chr16:29,807,348
INFO 2026-06-03 21:30:03 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 01:32:08s. Time for last 1,000,000: 11s. Last read position: chr16:29,861,275
INFO 2026-06-03 21:30:15 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 01:32:20s. Time for last 1,000,000: 12s. Last read position: chr16:29,991,233
INFO 2026-06-03 21:30:28 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 01:32:32s. Time for last 1,000,000: 12s. Last read position: chr16:30,223,624
INFO 2026-06-03 21:30:32 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 01:32:36s. Time for last 1,000,000: 3s. Last read position: chr16:30,665,040
INFO 2026-06-03 21:30:44 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 01:32:49s. Time for last 1,000,000: 12s. Last read position: chr16:31,076,383
INFO 2026-06-03 21:30:54 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 01:32:59s. Time for last 1,000,000: 9s. Last read position: chr16:47,155,645
INFO 2026-06-03 21:31:10 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 01:33:14s. Time for last 1,000,000: 15s. Last read position: chr16:57,154,463
INFO 2026-06-03 21:31:35 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 01:33:40s. Time for last 1,000,000: 25s. Last read position: chr16:66,742,570
INFO 2026-06-03 21:31:51 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 01:33:56s. Time for last 1,000,000: 16s. Last read position: chr16:67,930,933
INFO 2026-06-03 21:32:03 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 01:34:08s. Time for last 1,000,000: 11s. Last read position: chr16:69,447,184
INFO 2026-06-03 21:32:21 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 01:34:26s. Time for last 1,000,000: 17s. Last read position: chr16:70,664,667
INFO 2026-06-03 21:32:33 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 01:34:38s. Time for last 1,000,000: 11s. Last read position: chr16:72,798,427
INFO 2026-06-03 21:32:45 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 01:34:49s. Time for last 1,000,000: 11s. Last read position: chr16:75,656,492
INFO 2026-06-03 21:32:56 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 01:35:00s. Time for last 1,000,000: 10s. Last read position: chr16:85,710,150
INFO 2026-06-03 21:33:08 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 01:35:12s. Time for last 1,000,000: 12s. Last read position: chr16:89,290,740
INFO 2026-06-03 21:33:37 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 01:35:41s. Time for last 1,000,000: 28s. Last read position: chr17:710,583
INFO 2026-06-03 21:33:52 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 01:35:57s. Time for last 1,000,000: 15s. Last read position: chr17:1,683,569
INFO 2026-06-03 21:34:05 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 01:36:10s. Time for last 1,000,000: 13s. Last read position: chr17:3,885,578
INFO 2026-06-03 21:34:20 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 01:36:24s. Time for last 1,000,000: 14s. Last read position: chr17:5,000,283
INFO 2026-06-03 21:34:35 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 01:36:40s. Time for last 1,000,000: 15s. Last read position: chr17:7,311,601
INFO 2026-06-03 21:34:47 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 01:36:52s. Time for last 1,000,000: 11s. Last read position: chr17:7,513,659
INFO 2026-06-03 21:35:01 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 01:37:06s. Time for last 1,000,000: 13s. Last read position: chr17:7,898,530
INFO 2026-06-03 21:35:18 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 01:37:22s. Time for last 1,000,000: 16s. Last read position: chr17:15,704,263
INFO 2026-06-03 21:35:33 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 01:37:37s. Time for last 1,000,000: 14s. Last read position: chr17:17,816,608
INFO 2026-06-03 21:35:54 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 01:37:58s. Time for last 1,000,000: 20s. Last read position: chr17:27,311,559
INFO 2026-06-03 21:36:07 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 01:38:12s. Time for last 1,000,000: 13s. Last read position: chr17:28,720,018
INFO 2026-06-03 21:36:20 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 01:38:25s. Time for last 1,000,000: 13s. Last read position: chr17:30,481,244
INFO 2026-06-03 21:36:39 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 01:38:43s. Time for last 1,000,000: 18s. Last read position: chr17:35,422,484
INFO 2026-06-03 21:36:49 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 01:38:54s. Time for last 1,000,000: 10s. Last read position: chr17:36,496,340
INFO 2026-06-03 21:37:00 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 01:39:04s. Time for last 1,000,000: 10s. Last read position: chr17:38,138,333
INFO 2026-06-03 21:37:08 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 01:39:13s. Time for last 1,000,000: 8s. Last read position: chr17:38,673,900
INFO 2026-06-03 21:37:17 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 01:39:22s. Time for last 1,000,000: 9s. Last read position: chr17:39,662,282
INFO 2026-06-03 21:37:37 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 01:39:41s. Time for last 1,000,000: 19s. Last read position: chr17:39,710,341
INFO 2026-06-03 21:38:06 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 01:40:11s. Time for last 1,000,000: 29s. Last read position: chr17:39,717,337
INFO 2026-06-03 21:38:43 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 01:40:48s. Time for last 1,000,000: 36s. Last read position: chr17:39,726,576
INFO 2026-06-03 21:39:16 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 01:41:21s. Time for last 1,000,000: 33s. Last read position: chr17:40,096,381
INFO 2026-06-03 21:39:25 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 01:41:30s. Time for last 1,000,000: 8s. Last read position: chr17:40,880,756
INFO 2026-06-03 21:39:33 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 01:41:37s. Time for last 1,000,000: 7s. Last read position: chr17:41,878,134
INFO 2026-06-03 21:39:51 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 01:41:55s. Time for last 1,000,000: 17s. Last read position: chr17:42,775,451
INFO 2026-06-03 21:40:04 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 01:42:09s. Time for last 1,000,000: 13s. Last read position: chr17:44,320,050
INFO 2026-06-03 21:40:17 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 01:42:21s. Time for last 1,000,000: 12s. Last read position: chr17:45,396,270
INFO 2026-06-03 21:40:31 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 01:42:35s. Time for last 1,000,000: 14s. Last read position: chr17:47,601,660
INFO 2026-06-03 21:40:46 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 01:42:51s. Time for last 1,000,000: 15s. Last read position: chr17:50,141,345
INFO 2026-06-03 21:40:57 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 01:43:01s. Time for last 1,000,000: 10s. Last read position: chr17:50,462,492
INFO 2026-06-03 21:41:11 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 01:43:16s. Time for last 1,000,000: 14s. Last read position: chr17:56,978,184
INFO 2026-06-03 21:41:24 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 01:43:29s. Time for last 1,000,000: 12s. Last read position: chr17:59,681,355
INFO 2026-06-03 21:41:37 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 01:43:42s. Time for last 1,000,000: 13s. Last read position: chr17:62,031,514
INFO 2026-06-03 21:41:54 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 01:43:59s. Time for last 1,000,000: 17s. Last read position: chr17:64,504,274
INFO 2026-06-03 21:42:09 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 01:44:14s. Time for last 1,000,000: 14s. Last read position: chr17:68,523,745
INFO 2026-06-03 21:42:22 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 01:44:26s. Time for last 1,000,000: 12s. Last read position: chr17:75,233,081
INFO 2026-06-03 21:42:45 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 01:44:50s. Time for last 1,000,000: 23s. Last read position: chr17:75,750,249
INFO 2026-06-03 21:42:57 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 01:45:02s. Time for last 1,000,000: 12s. Last read position: chr17:76,008,385
INFO 2026-06-03 21:43:06 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 01:45:10s. Time for last 1,000,000: 8s. Last read position: chr17:76,270,329
INFO 2026-06-03 21:43:22 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 01:45:26s. Time for last 1,000,000: 15s. Last read position: chr17:78,870,898
INFO 2026-06-03 21:43:33 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 01:45:38s. Time for last 1,000,000: 11s. Last read position: chr17:80,340,276
INFO 2026-06-03 21:43:52 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 01:45:57s. Time for last 1,000,000: 19s. Last read position: chr17:81,512,253
INFO 2026-06-03 21:44:35 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 01:46:39s. Time for last 1,000,000: 42s. Last read position: chr17:81,909,311
INFO 2026-06-03 21:44:49 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 01:46:54s. Time for last 1,000,000: 14s. Last read position: chr17:82,088,530
INFO 2026-06-03 21:45:07 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 01:47:12s. Time for last 1,000,000: 18s. Last read position: chr18:214,653
INFO 2026-06-03 21:45:22 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 01:47:27s. Time for last 1,000,000: 14s. Last read position: chr18:8,706,326
INFO 2026-06-03 21:45:33 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 01:47:38s. Time for last 1,000,000: 11s. Last read position: chr18:20,984,410
INFO 2026-06-03 21:45:44 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 01:47:48s. Time for last 1,000,000: 10s. Last read position: chr18:36,124,677
INFO 2026-06-03 21:45:57 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 01:48:02s. Time for last 1,000,000: 13s. Last read position: chr18:49,929,512
INFO 2026-06-03 21:46:24 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 01:48:28s. Time for last 1,000,000: 26s. Last read position: chr18:58,335,473
INFO 2026-06-03 21:46:46 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 01:48:51s. Time for last 1,000,000: 22s. Last read position: chr18:74,513,577
INFO 2026-06-03 21:46:59 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 01:49:03s. Time for last 1,000,000: 12s. Last read position: chr19:808,691
INFO 2026-06-03 21:47:14 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 01:49:18s. Time for last 1,000,000: 14s. Last read position: chr19:1,360,888
INFO 2026-06-03 21:47:24 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 01:49:29s. Time for last 1,000,000: 10s. Last read position: chr19:1,881,264
INFO 2026-06-03 21:47:35 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 01:49:39s. Time for last 1,000,000: 10s. Last read position: chr19:2,639,745
INFO 2026-06-03 21:47:46 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 01:49:50s. Time for last 1,000,000: 10s. Last read position: chr19:4,117,520
INFO 2026-06-03 21:47:55 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 01:49:59s. Time for last 1,000,000: 8s. Last read position: chr19:5,119,831
INFO 2026-06-03 21:48:08 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 01:50:12s. Time for last 1,000,000: 13s. Last read position: chr19:6,222,626
INFO 2026-06-03 21:48:21 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 01:50:25s. Time for last 1,000,000: 12s. Last read position: chr19:7,617,649
INFO 2026-06-03 21:48:31 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 01:50:36s. Time for last 1,000,000: 10s. Last read position: chr19:9,980,680
INFO 2026-06-03 21:48:55 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 01:50:59s. Time for last 1,000,000: 23s. Last read position: chr19:10,678,652
INFO 2026-06-03 21:49:45 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 01:51:49s. Time for last 1,000,000: 50s. Last read position: chr19:11,204,205
INFO 2026-06-03 21:49:57 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 01:52:02s. Time for last 1,000,000: 12s. Last read position: chr19:12,719,138
INFO 2026-06-03 21:50:09 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 01:52:14s. Time for last 1,000,000: 11s. Last read position: chr19:13,906,382
INFO 2026-06-03 21:50:23 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 01:52:27s. Time for last 1,000,000: 13s. Last read position: chr19:14,565,794
INFO 2026-06-03 21:50:31 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 01:52:36s. Time for last 1,000,000: 8s. Last read position: chr19:15,255,308
INFO 2026-06-03 21:50:53 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 01:52:57s. Time for last 1,000,000: 21s. Last read position: chr19:16,198,032
INFO 2026-06-03 21:51:06 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 01:53:11s. Time for last 1,000,000: 13s. Last read position: chr19:17,301,019
INFO 2026-06-03 21:51:14 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 01:53:19s. Time for last 1,000,000: 8s. Last read position: chr19:18,386,179
INFO 2026-06-03 21:51:29 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 01:53:34s. Time for last 1,000,000: 14s. Last read position: chr19:19,194,094
INFO 2026-06-03 21:51:38 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 01:53:43s. Time for last 1,000,000: 8s. Last read position: chr19:29,208,081
INFO 2026-06-03 21:51:45 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 01:53:50s. Time for last 1,000,000: 6s. Last read position: chr19:34,341,996
INFO 2026-06-03 21:52:00 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 01:54:05s. Time for last 1,000,000: 15s. Last read position: chr19:35,267,822
INFO 2026-06-03 21:52:14 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 01:54:19s. Time for last 1,000,000: 13s. Last read position: chr19:35,720,662
INFO 2026-06-03 21:52:30 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 01:54:35s. Time for last 1,000,000: 16s. Last read position: chr19:36,140,045
INFO 2026-06-03 21:52:41 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 01:54:45s. Time for last 1,000,000: 10s. Last read position: chr19:38,387,054
INFO 2026-06-03 21:52:53 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 01:54:58s. Time for last 1,000,000: 12s. Last read position: chr19:39,386,068
INFO 2026-06-03 21:53:08 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 01:55:13s. Time for last 1,000,000: 14s. Last read position: chr19:40,272,804
INFO 2026-06-03 21:53:28 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 01:55:32s. Time for last 1,000,000: 19s. Last read position: chr19:41,895,475
INFO 2026-06-03 21:53:39 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 01:55:44s. Time for last 1,000,000: 11s. Last read position: chr19:42,293,118
INFO 2026-06-03 21:53:49 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 01:55:54s. Time for last 1,000,000: 10s. Last read position: chr19:44,266,855
INFO 2026-06-03 21:53:58 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 01:56:02s. Time for last 1,000,000: 8s. Last read position: chr19:45,348,796
INFO 2026-06-03 21:54:09 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 01:56:13s. Time for last 1,000,000: 10s. Last read position: chr19:45,901,564
INFO 2026-06-03 21:54:19 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 01:56:24s. Time for last 1,000,000: 10s. Last read position: chr19:47,694,463
INFO 2026-06-03 21:54:32 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 01:56:36s. Time for last 1,000,000: 12s. Last read position: chr19:48,799,791
INFO 2026-06-03 21:54:44 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 01:56:48s. Time for last 1,000,000: 11s. Last read position: chr19:49,489,854
INFO 2026-06-03 21:54:53 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 01:56:58s. Time for last 1,000,000: 9s. Last read position: chr19:49,792,994
INFO 2026-06-03 21:55:16 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 01:57:21s. Time for last 1,000,000: 22s. Last read position: chr19:50,309,165
INFO 2026-06-03 21:55:25 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 01:57:30s. Time for last 1,000,000: 9s. Last read position: chr19:53,398,014
INFO 2026-06-03 21:55:36 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 01:57:41s. Time for last 1,000,000: 11s. Last read position: chr19:54,970,003
INFO 2026-06-03 21:55:46 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 01:57:51s. Time for last 1,000,000: 9s. Last read position: chr19:55,616,583
INFO 2026-06-03 21:55:53 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 01:57:57s. Time for last 1,000,000: 6s. Last read position: chr19:57,859,408
INFO 2026-06-03 21:56:02 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 01:58:06s. Time for last 1,000,000: 9s. Last read position: chr20:396,260
INFO 2026-06-03 21:56:15 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 01:58:19s. Time for last 1,000,000: 13s. Last read position: chr20:3,471,055
INFO 2026-06-03 21:56:24 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 01:58:28s. Time for last 1,000,000: 8s. Last read position: chr20:17,614,769
INFO 2026-06-03 21:56:36 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 01:58:41s. Time for last 1,000,000: 12s. Last read position: chr20:25,217,564
INFO 2026-06-03 21:56:49 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 01:58:53s. Time for last 1,000,000: 12s. Last read position: chr20:32,762,665
INFO 2026-06-03 21:57:00 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 01:59:05s. Time for last 1,000,000: 11s. Last read position: chr20:35,280,684
INFO 2026-06-03 21:57:25 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 01:59:29s. Time for last 1,000,000: 24s. Last read position: chr20:36,500,346
INFO 2026-06-03 21:57:35 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 01:59:40s. Time for last 1,000,000: 10s. Last read position: chr20:41,165,014
INFO 2026-06-03 21:57:46 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 01:59:51s. Time for last 1,000,000: 11s. Last read position: chr20:45,327,369
INFO 2026-06-03 21:58:06 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 02:00:11s. Time for last 1,000,000: 20s. Last read position: chr20:48,745,069
INFO 2026-06-03 21:58:16 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 02:00:20s. Time for last 1,000,000: 9s. Last read position: chr20:53,582,473
INFO 2026-06-03 21:58:38 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 02:00:43s. Time for last 1,000,000: 22s. Last read position: chr20:62,139,895
INFO 2026-06-03 21:58:52 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 02:00:57s. Time for last 1,000,000: 13s. Last read position: chr20:62,813,121
INFO 2026-06-03 21:59:01 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 02:01:05s. Time for last 1,000,000: 8s. Last read position: chr20:63,708,779
INFO 2026-06-03 21:59:06 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 02:01:10s. Time for last 1,000,000: 5s. Last read position: chr21:8,213,351
INFO 2026-06-03 21:59:07 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 02:01:12s. Time for last 1,000,000: 1s. Last read position: chr21:8,214,749
INFO 2026-06-03 21:59:08 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 02:01:13s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,905
INFO 2026-06-03 21:59:09 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 02:01:13s. Time for last 1,000,000: 0s. Last read position: chr21:8,260,219
INFO 2026-06-03 21:59:10 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 02:01:15s. Time for last 1,000,000: 1s. Last read position: chr21:8,397,783
INFO 2026-06-03 21:59:12 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 02:01:16s. Time for last 1,000,000: 1s. Last read position: chr21:8,441,932
INFO 2026-06-03 21:59:13 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 02:01:17s. Time for last 1,000,000: 1s. Last read position: chr21:8,442,014
INFO 2026-06-03 21:59:14 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 02:01:19s. Time for last 1,000,000: 1s. Last read position: chr21:14,966,961
INFO 2026-06-03 21:59:25 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 02:01:30s. Time for last 1,000,000: 11s. Last read position: chr21:32,762,122
INFO 2026-06-03 21:59:36 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 02:01:41s. Time for last 1,000,000: 10s. Last read position: chr21:34,792,524
INFO 2026-06-03 22:00:00 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 02:02:04s. Time for last 1,000,000: 23s. Last read position: chr21:41,245,967
INFO 2026-06-03 22:00:37 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 02:02:42s. Time for last 1,000,000: 37s. Last read position: chr21:42,733,413
INFO 2026-06-03 22:00:47 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 02:02:52s. Time for last 1,000,000: 9s. Last read position: chr21:44,326,726
INFO 2026-06-03 22:01:01 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 02:03:05s. Time for last 1,000,000: 13s. Last read position: chr21:46,391,308
INFO 2026-06-03 22:01:14 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 02:03:18s. Time for last 1,000,000: 13s. Last read position: chr22:19,963,624
INFO 2026-06-03 22:01:30 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 02:03:35s. Time for last 1,000,000: 16s. Last read position: chr22:21,970,325
INFO 2026-06-03 22:01:41 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 02:03:46s. Time for last 1,000,000: 11s. Last read position: chr22:25,039,889
INFO 2026-06-03 22:02:01 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 02:04:06s. Time for last 1,000,000: 19s. Last read position: chr22:29,299,622
INFO 2026-06-03 22:02:18 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 02:04:22s. Time for last 1,000,000: 16s. Last read position: chr22:31,125,842
INFO 2026-06-03 22:02:36 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 02:04:41s. Time for last 1,000,000: 18s. Last read position: chr22:36,288,309
INFO 2026-06-03 22:02:46 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 02:04:50s. Time for last 1,000,000: 9s. Last read position: chr22:37,724,775
INFO 2026-06-03 22:02:59 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 02:05:03s. Time for last 1,000,000: 12s. Last read position: chr22:38,699,911
INFO 2026-06-03 22:03:09 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 02:05:13s. Time for last 1,000,000: 10s. Last read position: chr22:40,857,113
INFO 2026-06-03 22:03:21 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 02:05:26s. Time for last 1,000,000: 12s. Last read position: chr22:42,214,151
INFO 2026-06-03 22:03:32 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 02:05:36s. Time for last 1,000,000: 10s. Last read position: chr22:45,550,510
INFO 2026-06-03 22:03:43 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 02:05:47s. Time for last 1,000,000: 10s. Last read position: chr22:50,278,616
INFO 2026-06-03 22:03:58 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 02:06:02s. Time for last 1,000,000: 15s. Last read position: chr22:50,731,054
INFO 2026-06-03 22:04:02 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 02:06:06s. Time for last 1,000,000: 4s. Last read position: chrX:8,466,267
INFO 2026-06-03 22:04:14 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 02:06:18s. Time for last 1,000,000: 11s. Last read position: chrX:24,055,006
INFO 2026-06-03 22:04:43 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 02:06:48s. Time for last 1,000,000: 29s. Last read position: chrX:43,711,917
INFO 2026-06-03 22:04:58 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 02:07:03s. Time for last 1,000,000: 15s. Last read position: chrX:48,698,939
INFO 2026-06-03 22:05:11 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 02:07:16s. Time for last 1,000,000: 13s. Last read position: chrX:52,192,102
INFO 2026-06-03 22:05:28 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 02:07:32s. Time for last 1,000,000: 16s. Last read position: chrX:53,580,985
INFO 2026-06-03 22:05:47 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 02:07:52s. Time for last 1,000,000: 19s. Last read position: chrX:69,616,619
INFO 2026-06-03 22:06:08 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 02:08:13s. Time for last 1,000,000: 21s. Last read position: chrX:74,592,741
INFO 2026-06-03 22:06:21 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 02:08:25s. Time for last 1,000,000: 12s. Last read position: chrX:101,625,207
INFO 2026-06-03 22:06:29 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 02:08:33s. Time for last 1,000,000: 8s. Last read position: chrX:119,930,106
INFO 2026-06-03 22:06:40 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 02:08:45s. Time for last 1,000,000: 11s. Last read position: chrX:147,921,969
INFO 2026-06-03 22:06:51 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 02:08:56s. Time for last 1,000,000: 10s. Last read position: chrX:153,956,719
INFO 2026-06-03 22:07:06 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 02:09:11s. Time for last 1,000,000: 15s. Last read position: chrX:155,051,702
INFO 2026-06-03 22:07:08 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 02:09:12s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,151
INFO 2026-06-03 22:07:09 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 02:09:13s. Time for last 1,000,000: 0s. Last read position: GL000220.1:115,551
INFO 2026-06-03 22:07:09 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 02:09:14s. Time for last 1,000,000: 0s. Last read position: GL000220.1:158,121
INFO 2026-06-03 22:07:10 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 02:09:15s. Time for last 1,000,000: 0s. Last read position: GL000220.1:159,460
INFO 2026-06-03 22:07:11 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 02:09:16s. Time for last 1,000,000: 0s. Last read position: KI270733.1:129,737
INFO 2026-06-03 22:07:12 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 02:09:17s. Time for last 1,000,000: 1s. Last read position: KI270733.1:131,041
INFO 2026-06-03 22:07:13 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 02:09:18s. Time for last 1,000,000: 0s. Last read position: KI270733.1:168,888
INFO 2026-06-03 22:07:14 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 02:09:19s. Time for last 1,000,000: 0s. Last read position: KI270733.1:176,099
INFO 2026-06-03 22:07:15 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 02:09:19s. Time for last 1,000,000: 0s. Last read position: KI270733.1:178,721
INFO 2026-06-03 22:07:16 SinglePassSamProgram Processed 532,000,000 records. Elapsed time: 02:09:20s. Time for last 1,000,000: 0s. Last read position: */*
INFO 2026-06-03 22:07:17 SinglePassSamProgram Processed 533,000,000 records. Elapsed time: 02:09:21s. Time for last 1,000,000: 0s. Last read position: */*
INFO 2026-06-03 22:07:18 SinglePassSamProgram Processed 534,000,000 records. Elapsed time: 02:09:22s. Time for last 1,000,000: 0s. Last read position: */*
[Wed Jun 03 22:07:19 GMT 2026] picard.analysis.CollectRnaSeqMetrics done. Elapsed time: 129.44 minutes.
Runtime.totalMemory()=3113222144