File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/96f357a45fdea56e7638e05082bc73/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-31d31f-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e543dae6-5fea-4720-bfb6-150bf1ff20d4/82/1bfcba5045fc10a52ca200a4890a9a/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/96f357a45fdea56e7638e05082bc73/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/e9e47413de61e313250436f60f68b5/aih-tih-sc-31d31f-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/96f357a45fdea56e7638e05082bc73/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/34f0d32d0c61dc0b6ae9340848011c/aih-tih-sc-31d31f-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...

  0%|          | 0/2 [00:00<?, ?it/s]STX16--NPEPL1
arriba
TVP23C--CDRT4
arriba

Processing STX16--NPEPL1:   0%|          | 0/2 [00:00<?, ?it/s]
Processing STX16--NPEPL1:  50%|█████     | 1/2 [00:00<00:00,  9.21it/s]
Processing TVP23C--CDRT4:  50%|█████     | 1/2 [00:00<00:00,  9.21it/s]
Processing TVP23C--CDRT4: 100%|██████████| 2/2 [00:00<00:00,  9.42it/s]
Processing TVP23C--CDRT4: 100%|██████████| 2/2 [00:00<00:00,  9.38it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory