/usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory INFO 2026-06-03 20:40:44 RExecutor Executing R script via command: Rscript /tmp/script17397899069694404774.R ERROR 2026-06-03 20:40:44 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:40:45 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:40:45 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:40:45 ProcessExecutor During startup - Warning messages: ERROR 2026-06-03 20:40:45 ProcessExecutor 1: Setting LC_CTYPE failed, using "C" ERROR 2026-06-03 20:40:45 ProcessExecutor 2: Setting LC_COLLATE failed, using "C" ERROR 2026-06-03 20:40:45 ProcessExecutor 3: Setting LC_TIME failed, using "C" ERROR 2026-06-03 20:40:45 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C" ERROR 2026-06-03 20:40:45 ProcessExecutor 5: Setting LC_MONETARY failed, using "C" ERROR 2026-06-03 20:40:45 ProcessExecutor 6: Setting LC_PAPER failed, using "C" ERROR 2026-06-03 20:40:45 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C" INFO 2026-06-03 20:40:45 ProcessExecutor [1] "Checking if R is installed" ERROR 2026-06-03 20:40:45 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) Jun 03, 2026 8:40:45 PM com.intel.gkl.NativeLibraryLoader load INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so [Wed Jun 03 20:40:45 GMT 2026] CollectInsertSizeMetrics --Histogram_FILE aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1_collectinsertsize.pdf --INPUT aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1_collectinsertsize.txt --DEVIATIONS 10.0 --MINIMUM_PCT 0.05 --METRIC_ACCUMULATION_LEVEL ALL_READS --INCLUDE_DUPLICATES false --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Wed Jun 03 20:40:45 GMT 2026] Executing as ?@nf-aa0c41eada5017059ee947edffec3383-5162d-gbcjq on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0 INFO 2026-06-03 20:40:46 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:01s. Time for last 1,000,000: 1s. Last read position: chr1:1,204,151 INFO 2026-06-03 20:40:47 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 1s. Last read position: chr1:1,752,909 INFO 2026-06-03 20:40:48 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 1s. Last read position: chr1:6,254,605 INFO 2026-06-03 20:40:50 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 1s. Last read position: chr1:8,861,374 INFO 2026-06-03 20:40:51 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 1s. Last read position: chr1:10,272,295 INFO 2026-06-03 20:40:52 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 1s. Last read position: chr1:11,949,838 INFO 2026-06-03 20:40:53 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 1s. Last read position: chr1:15,774,639 INFO 2026-06-03 20:40:54 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 1s. Last read position: chr1:16,938,958 INFO 2026-06-03 20:40:55 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:19,199,653 INFO 2026-06-03 20:40:56 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:21,751,601 INFO 2026-06-03 20:40:57 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 1s. Last read position: chr1:21,876,348 INFO 2026-06-03 20:40:59 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 1s. Last read position: chr1:23,692,626 INFO 2026-06-03 20:41:00 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 1s. Last read position: chr1:25,984,016 INFO 2026-06-03 20:41:01 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:26,863,295 INFO 2026-06-03 20:41:02 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 1s. Last read position: chr1:27,549,014 INFO 2026-06-03 20:41:03 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 1s. Last read position: chr1:30,966,176 INFO 2026-06-03 20:41:04 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:32,224,475 INFO 2026-06-03 20:41:05 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:33,328,887 INFO 2026-06-03 20:41:06 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:36,282,630 INFO 2026-06-03 20:41:07 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 1s. Last read position: chr1:39,353,065 INFO 2026-06-03 20:41:09 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:40,311,135 INFO 2026-06-03 20:41:10 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 1s. Last read position: chr1:42,929,285 INFO 2026-06-03 20:41:11 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:43,438,997 INFO 2026-06-03 20:41:12 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 1s. Last read position: chr1:44,220,245 INFO 2026-06-03 20:41:13 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:46,281,283 INFO 2026-06-03 20:41:14 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:52,606,643 INFO 2026-06-03 20:41:15 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:58,576,270 INFO 2026-06-03 20:41:16 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:62,444,986 INFO 2026-06-03 20:41:18 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:77,154,513 INFO 2026-06-03 20:41:19 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:86,577,902 INFO 2026-06-03 20:41:20 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:89,933,335 INFO 2026-06-03 20:41:21 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:99,916,481 INFO 2026-06-03 20:41:22 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:109,272,858 INFO 2026-06-03 20:41:23 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:112,523,782 INFO 2026-06-03 20:41:24 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:114,510,918 INFO 2026-06-03 20:41:25 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:116,944,677 INFO 2026-06-03 20:41:27 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:119,963,661 INFO 2026-06-03 20:41:28 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:145,926,124 INFO 2026-06-03 20:41:29 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:148,554,350 INFO 2026-06-03 20:41:30 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:149,840,814 INFO 2026-06-03 20:41:31 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:150,266,611 INFO 2026-06-03 20:41:32 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:151,234,315 INFO 2026-06-03 20:41:33 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:152,910,661 INFO 2026-06-03 20:41:34 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:153,056,370 INFO 2026-06-03 20:41:35 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:153,358,289 INFO 2026-06-03 20:41:36 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:153,390,128 INFO 2026-06-03 20:41:37 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:153,936,090 INFO 2026-06-03 20:41:38 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:154,275,153 INFO 2026-06-03 20:41:40 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:155,062,280 INFO 2026-06-03 20:41:41 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:155,747,613 INFO 2026-06-03 20:41:42 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:156,259,055 INFO 2026-06-03 20:41:43 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:159,015,949 INFO 2026-06-03 20:41:44 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:160,999,721 INFO 2026-06-03 20:41:45 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:162,500,155 INFO 2026-06-03 20:41:46 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:169,130,070 INFO 2026-06-03 20:41:47 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:173,485,380 INFO 2026-06-03 20:41:49 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:181,089,616 INFO 2026-06-03 20:41:50 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:183,566,960 INFO 2026-06-03 20:41:51 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:195,142,443 INFO 2026-06-03 20:41:52 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:201,386,829 INFO 2026-06-03 20:41:53 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:203,007,412 INFO 2026-06-03 20:41:54 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:206,477,779 INFO 2026-06-03 20:41:55 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:209,627,456 INFO 2026-06-03 20:41:56 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:219,978,641 INFO 2026-06-03 20:41:57 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:225,411,377 INFO 2026-06-03 20:41:59 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:228,279,216 INFO 2026-06-03 20:42:00 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:234,607,143 INFO 2026-06-03 20:42:01 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:244,856,839 INFO 2026-06-03 20:42:02 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr2:6,851,577 INFO 2026-06-03 20:42:03 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr2:10,797,130 INFO 2026-06-03 20:42:04 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr2:20,202,920 INFO 2026-06-03 20:42:05 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr2:20,205,383 INFO 2026-06-03 20:42:06 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr2:26,034,619 INFO 2026-06-03 20:42:08 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr2:27,576,337 INFO 2026-06-03 20:42:09 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr2:30,958,431 INFO 2026-06-03 20:42:10 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,257 INFO 2026-06-03 20:42:11 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264 INFO 2026-06-03 20:42:12 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406 INFO 2026-06-03 20:42:13 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,407 INFO 2026-06-03 20:42:14 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr2:38,568,161 INFO 2026-06-03 20:42:15 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr2:43,947,331 INFO 2026-06-03 20:42:16 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr2:53,927,410 INFO 2026-06-03 20:42:18 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr2:55,881,685 INFO 2026-06-03 20:42:19 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr2:63,885,708 INFO 2026-06-03 20:42:20 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr2:70,087,942 INFO 2026-06-03 20:42:21 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr2:74,048,121 INFO 2026-06-03 20:42:22 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr2:84,906,590 INFO 2026-06-03 20:42:23 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr2:87,519,314 INFO 2026-06-03 20:42:24 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr2:96,286,372 INFO 2026-06-03 20:42:25 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr2:99,404,635 INFO 2026-06-03 20:42:26 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr2:108,751,263 INFO 2026-06-03 20:42:28 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr2:110,285,650 INFO 2026-06-03 20:42:29 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr2:113,132,891 INFO 2026-06-03 20:42:30 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr2:121,347,141 INFO 2026-06-03 20:42:31 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr2:131,836,142 INFO 2026-06-03 20:42:32 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr2:151,540,349 INFO 2026-06-03 20:42:33 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr2:158,663,281 INFO 2026-06-03 20:42:34 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr2:169,607,126 INFO 2026-06-03 20:42:35 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr2:173,956,011 INFO 2026-06-03 20:42:36 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr2:178,532,889 INFO 2026-06-03 20:42:38 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr2:178,618,411 INFO 2026-06-03 20:42:39 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr2:182,743,649 INFO 2026-06-03 20:42:40 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr2:189,002,308 INFO 2026-06-03 20:42:41 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr2:190,974,836 INFO 2026-06-03 20:42:42 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr2:201,129,839 INFO 2026-06-03 20:42:43 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr2:206,567,249 INFO 2026-06-03 20:42:44 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr2:215,365,515 INFO 2026-06-03 20:42:45 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr2:215,376,522 INFO 2026-06-03 20:42:47 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:215,391,712 INFO 2026-06-03 20:42:48 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:215,409,563 INFO 2026-06-03 20:42:49 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:215,431,849 INFO 2026-06-03 20:42:50 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:217,890,977 INFO 2026-06-03 20:42:51 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:219,250,743 INFO 2026-06-03 20:42:52 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr2:227,536,913 INFO 2026-06-03 20:42:53 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:231,711,406 INFO 2026-06-03 20:42:54 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr2:236,580,986 INFO 2026-06-03 20:42:55 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:239,990,087 INFO 2026-06-03 20:42:57 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:241,584,674 INFO 2026-06-03 20:42:58 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr3:9,793,069 INFO 2026-06-03 20:42:59 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr3:12,840,208 INFO 2026-06-03 20:43:00 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr3:20,183,904 INFO 2026-06-03 20:43:01 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr3:33,855,165 INFO 2026-06-03 20:43:02 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr3:40,462,032 INFO 2026-06-03 20:43:03 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr3:45,095,451 INFO 2026-06-03 20:43:04 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr3:47,006,440 INFO 2026-06-03 20:43:05 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr3:48,260,886 INFO 2026-06-03 20:43:07 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr3:48,575,443 INFO 2026-06-03 20:43:08 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr3:48,694,910 INFO 2026-06-03 20:43:09 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr3:49,358,089 INFO 2026-06-03 20:43:10 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr3:50,187,895 INFO 2026-06-03 20:43:11 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr3:52,232,009 INFO 2026-06-03 20:43:12 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr3:53,228,056 INFO 2026-06-03 20:43:13 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr3:58,123,321 INFO 2026-06-03 20:43:14 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr3:69,180,981 INFO 2026-06-03 20:43:16 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr3:100,310,524 INFO 2026-06-03 20:43:17 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr3:111,953,909 INFO 2026-06-03 20:43:18 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr3:121,691,063 INFO 2026-06-03 20:43:19 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr3:124,763,593 INFO 2026-06-03 20:43:20 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr3:128,726,349 INFO 2026-06-03 20:43:21 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr3:132,666,014 INFO 2026-06-03 20:43:22 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr3:141,876,905 INFO 2026-06-03 20:43:23 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr3:150,603,339 INFO 2026-06-03 20:43:24 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr3:163,026,356 INFO 2026-06-03 20:43:26 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr3:172,752,058 INFO 2026-06-03 20:43:27 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr3:180,988,023 INFO 2026-06-03 20:43:28 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr3:183,987,838 INFO 2026-06-03 20:43:29 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr3:184,315,487 INFO 2026-06-03 20:43:30 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr3:184,711,631 INFO 2026-06-03 20:43:31 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr3:187,043,235 INFO 2026-06-03 20:43:32 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr3:189,867,836 INFO 2026-06-03 20:43:33 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr3:194,138,118 INFO 2026-06-03 20:43:34 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr3:195,749,005 INFO 2026-06-03 20:43:36 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr3:195,779,365 INFO 2026-06-03 20:43:37 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr3:195,780,738 INFO 2026-06-03 20:43:38 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr3:195,781,936 INFO 2026-06-03 20:43:39 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr3:195,783,219 INFO 2026-06-03 20:43:40 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr3:195,784,784 INFO 2026-06-03 20:43:41 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr3:195,786,154 INFO 2026-06-03 20:43:42 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr3:195,788,280 INFO 2026-06-03 20:43:43 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr3:195,971,323 INFO 2026-06-03 20:43:44 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr3:196,814,455 INFO 2026-06-03 20:43:46 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr4:87,331 INFO 2026-06-03 20:43:47 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr4:1,740,825 INFO 2026-06-03 20:43:48 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr4:1,806,553 INFO 2026-06-03 20:43:49 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr4:3,131,682 INFO 2026-06-03 20:43:50 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr4:8,236,277 INFO 2026-06-03 20:43:51 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr4:24,556,338 INFO 2026-06-03 20:43:52 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr4:39,510,511 INFO 2026-06-03 20:43:53 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr4:53,573,888 INFO 2026-06-03 20:43:54 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr4:67,717,259 INFO 2026-06-03 20:43:56 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr4:73,740,683 INFO 2026-06-03 20:43:57 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr4:82,426,085 INFO 2026-06-03 20:43:58 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr4:86,732,748 INFO 2026-06-03 20:43:59 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr4:94,665,930 INFO 2026-06-03 20:44:00 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr4:105,693,433 INFO 2026-06-03 20:44:01 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr4:121,672,598 INFO 2026-06-03 20:44:02 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr4:143,195,733 INFO 2026-06-03 20:44:03 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr4:152,628,468 INFO 2026-06-03 20:44:05 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr4:169,741,955 INFO 2026-06-03 20:44:06 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr4:186,628,235 INFO 2026-06-03 20:44:07 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr5:10,394,769 INFO 2026-06-03 20:44:08 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr5:17,275,396 INFO 2026-06-03 20:44:09 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr5:38,944,955 INFO 2026-06-03 20:44:10 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr5:55,941,302 INFO 2026-06-03 20:44:11 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr5:70,067,114 INFO 2026-06-03 20:44:12 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr5:78,885,698 INFO 2026-06-03 20:44:13 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr5:95,898,582 INFO 2026-06-03 20:44:15 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr5:118,974,092 INFO 2026-06-03 20:44:16 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr5:134,566,436 INFO 2026-06-03 20:44:17 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr5:138,783,217 INFO 2026-06-03 20:44:18 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr5:141,404,509 INFO 2026-06-03 20:44:19 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr5:149,362,577 INFO 2026-06-03 20:44:20 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,237 INFO 2026-06-03 20:44:21 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr5:150,647,991 INFO 2026-06-03 20:44:22 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr5:151,794,183 INFO 2026-06-03 20:44:24 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr5:171,387,966 INFO 2026-06-03 20:44:25 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr5:177,135,138 INFO 2026-06-03 20:44:26 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr5:179,619,286 INFO 2026-06-03 20:44:27 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr5:180,567,902 INFO 2026-06-03 20:44:28 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr6:4,943,700 INFO 2026-06-03 20:44:29 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr6:7,566,448 INFO 2026-06-03 20:44:30 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr6:7,584,591 INFO 2026-06-03 20:44:31 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr6:17,637,226 INFO 2026-06-03 20:44:32 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr6:26,103,957 INFO 2026-06-03 20:44:33 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr6:26,376,815 INFO 2026-06-03 20:44:34 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr6:27,865,337 INFO 2026-06-03 20:44:35 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr6:30,186,038 INFO 2026-06-03 20:44:37 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr6:30,893,414 INFO 2026-06-03 20:44:38 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr6:31,633,377 INFO 2026-06-03 20:44:39 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr6:31,828,722 INFO 2026-06-03 20:44:40 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr6:32,367,924 INFO 2026-06-03 20:44:41 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr6:33,205,652 INFO 2026-06-03 20:44:42 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr6:33,671,170 INFO 2026-06-03 20:44:43 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr6:36,138,377 INFO 2026-06-03 20:44:44 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr6:42,104,570 INFO 2026-06-03 20:44:45 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr6:43,369,067 INFO 2026-06-03 20:44:47 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr6:44,310,259 INFO 2026-06-03 20:44:48 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr6:54,870,190 INFO 2026-06-03 20:44:49 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr6:56,631,316 INFO 2026-06-03 20:44:50 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr6:73,792,771 INFO 2026-06-03 20:44:51 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr6:83,129,153 INFO 2026-06-03 20:44:52 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr6:89,829,909 INFO 2026-06-03 20:44:53 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr6:107,459,131 INFO 2026-06-03 20:44:54 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr6:113,945,395 INFO 2026-06-03 20:44:55 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr6:127,280,275 INFO 2026-06-03 20:44:57 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr6:136,656,305 INFO 2026-06-03 20:44:58 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr6:139,166,804 INFO 2026-06-03 20:44:59 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr6:149,946,521 INFO 2026-06-03 20:45:00 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr6:158,766,892 INFO 2026-06-03 20:45:01 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr6:158,789,293 INFO 2026-06-03 20:45:02 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr6:160,628,251 INFO 2026-06-03 20:45:03 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr6:170,318,666 INFO 2026-06-03 20:45:04 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr7:5,351,910 INFO 2026-06-03 20:45:05 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,538 INFO 2026-06-03 20:45:07 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr7:22,150,409 INFO 2026-06-03 20:45:08 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr7:36,621,709 INFO 2026-06-03 20:45:09 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr7:44,566,032 INFO 2026-06-03 20:45:10 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr7:55,019,219 INFO 2026-06-03 20:45:11 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr7:67,309,595 INFO 2026-06-03 20:45:12 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr7:73,297,215 INFO 2026-06-03 20:45:13 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr7:74,538,677 INFO 2026-06-03 20:45:14 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr7:75,422,869 INFO 2026-06-03 20:45:15 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr7:76,302,826 INFO 2026-06-03 20:45:16 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr7:76,303,043 INFO 2026-06-03 20:45:18 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr7:76,304,074 INFO 2026-06-03 20:45:19 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr7:77,115,872 INFO 2026-06-03 20:45:20 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr7:92,001,053 INFO 2026-06-03 20:45:21 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr7:94,407,850 INFO 2026-06-03 20:45:22 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr7:98,320,068 INFO 2026-06-03 20:45:23 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr7:100,030,330 INFO 2026-06-03 20:45:24 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr7:100,433,332 INFO 2026-06-03 20:45:25 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr7:101,088,005 INFO 2026-06-03 20:45:26 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr7:102,566,723 INFO 2026-06-03 20:45:27 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr7:106,253,088 INFO 2026-06-03 20:45:29 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr7:121,968,062 INFO 2026-06-03 20:45:30 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr7:128,948,286 INFO 2026-06-03 20:45:31 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr7:139,715,941 INFO 2026-06-03 20:45:32 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr7:144,285,738 INFO 2026-06-03 20:45:33 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr7:151,142,407 INFO 2026-06-03 20:45:34 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr8:8,376,700 INFO 2026-06-03 20:45:35 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr8:15,730,684 INFO 2026-06-03 20:45:36 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr8:22,140,622 INFO 2026-06-03 20:45:38 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr8:24,384,525 INFO 2026-06-03 20:45:39 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr8:32,647,937 INFO 2026-06-03 20:45:40 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr8:38,337,317 INFO 2026-06-03 20:45:41 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr8:42,318,599 INFO 2026-06-03 20:45:42 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr8:47,927,233 INFO 2026-06-03 20:45:43 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr8:61,526,023 INFO 2026-06-03 20:45:44 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr8:70,608,077 INFO 2026-06-03 20:45:45 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr8:93,922,169 INFO 2026-06-03 20:45:46 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr8:100,706,912 INFO 2026-06-03 20:45:48 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr8:103,318,634 INFO 2026-06-03 20:45:49 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr8:119,788,433 INFO 2026-06-03 20:45:50 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr8:127,738,561 INFO 2026-06-03 20:45:51 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr8:133,262,126 INFO 2026-06-03 20:45:52 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr8:143,576,756 INFO 2026-06-03 20:45:53 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,327 INFO 2026-06-03 20:45:54 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,514 INFO 2026-06-03 20:45:55 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,634 INFO 2026-06-03 20:45:56 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr8:143,872,503 INFO 2026-06-03 20:45:57 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr8:143,929,818 INFO 2026-06-03 20:45:58 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr8:144,397,796 INFO 2026-06-03 20:45:59 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr9:2,833,376 INFO 2026-06-03 20:46:01 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr9:18,657,647 INFO 2026-06-03 20:46:02 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr9:32,973,494 INFO 2026-06-03 20:46:03 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr9:35,059,597 INFO 2026-06-03 20:46:04 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr9:35,842,418 INFO 2026-06-03 20:46:05 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr9:69,252,865 INFO 2026-06-03 20:46:06 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr9:73,162,820 INFO 2026-06-03 20:46:07 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr9:83,663,880 INFO 2026-06-03 20:46:08 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr9:84,727,937 INFO 2026-06-03 20:46:09 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr9:86,323,535 INFO 2026-06-03 20:46:11 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr9:93,289,561 INFO 2026-06-03 20:46:12 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr9:98,134,803 INFO 2026-06-03 20:46:13 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr9:107,487,444 INFO 2026-06-03 20:46:14 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr9:112,297,878 INFO 2026-06-03 20:46:15 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr9:115,086,455 INFO 2026-06-03 20:46:16 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr9:122,911,279 INFO 2026-06-03 20:46:17 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr9:127,451,280 INFO 2026-06-03 20:46:18 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr9:128,169,094 INFO 2026-06-03 20:46:20 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr9:128,907,464 INFO 2026-06-03 20:46:21 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr9:130,631,997 INFO 2026-06-03 20:46:22 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr9:132,402,237 INFO 2026-06-03 20:46:23 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr9:134,750,807 INFO 2026-06-03 20:46:24 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr9:136,477,106 INFO 2026-06-03 20:46:25 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr9:136,897,186 INFO 2026-06-03 20:46:26 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr9:137,613,748 INFO 2026-06-03 20:46:27 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr10:5,446,746 INFO 2026-06-03 20:46:28 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr10:6,216,755 INFO 2026-06-03 20:46:30 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr10:22,318,957 INFO 2026-06-03 20:46:31 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr10:29,462,331 INFO 2026-06-03 20:46:32 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr10:32,901,520 INFO 2026-06-03 20:46:33 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr10:45,699,083 INFO 2026-06-03 20:46:34 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr10:48,010,303 INFO 2026-06-03 20:46:35 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr10:63,207,903 INFO 2026-06-03 20:46:36 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr10:71,293,436 INFO 2026-06-03 20:46:37 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr10:73,793,591 INFO 2026-06-03 20:46:38 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr10:77,821,218 INFO 2026-06-03 20:46:40 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr10:84,150,121 INFO 2026-06-03 20:46:41 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr10:92,018,851 INFO 2026-06-03 20:46:42 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr10:96,551,313 INFO 2026-06-03 20:46:43 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr10:100,347,507 INFO 2026-06-03 20:46:44 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr10:102,379,575 INFO 2026-06-03 20:46:45 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr10:104,003,105 INFO 2026-06-03 20:46:46 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr10:104,070,502 INFO 2026-06-03 20:46:47 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr10:115,120,185 INFO 2026-06-03 20:46:49 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr10:121,503,891 INFO 2026-06-03 20:46:50 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr10:126,008,440 INFO 2026-06-03 20:46:51 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr10:133,558,899 INFO 2026-06-03 20:46:52 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr11:562,605 INFO 2026-06-03 20:46:53 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr11:993,867 INFO 2026-06-03 20:46:54 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr11:3,001,982 INFO 2026-06-03 20:46:55 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr11:7,620,990 INFO 2026-06-03 20:46:56 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr11:10,764,721 INFO 2026-06-03 20:46:57 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr11:15,384,619 INFO 2026-06-03 20:46:59 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr11:20,388,059 INFO 2026-06-03 20:47:00 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr11:34,651,735 INFO 2026-06-03 20:47:01 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr11:46,378,464 INFO 2026-06-03 20:47:02 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr11:47,723,104 INFO 2026-06-03 20:47:03 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr11:57,795,702 INFO 2026-06-03 20:47:04 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr11:60,902,798 INFO 2026-06-03 20:47:05 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr11:62,146,792 INFO 2026-06-03 20:47:06 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr11:62,525,756 INFO 2026-06-03 20:47:07 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr11:62,559,687 INFO 2026-06-03 20:47:08 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr11:62,824,514 INFO 2026-06-03 20:47:10 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr11:64,286,642 INFO 2026-06-03 20:47:11 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr11:65,110,752 INFO 2026-06-03 20:47:12 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr11:65,579,946 INFO 2026-06-03 20:47:13 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr11:65,856,046 INFO 2026-06-03 20:47:14 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr11:66,643,733 INFO 2026-06-03 20:47:15 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr11:67,435,930 INFO 2026-06-03 20:47:16 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr11:68,411,478 INFO 2026-06-03 20:47:17 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr11:72,015,518 INFO 2026-06-03 20:47:19 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr11:74,949,346 INFO 2026-06-03 20:47:20 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr11:82,850,429 INFO 2026-06-03 20:47:21 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr11:95,184,569 INFO 2026-06-03 20:47:22 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr11:108,052,679 INFO 2026-06-03 20:47:23 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr11:117,229,653 INFO 2026-06-03 20:47:24 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr11:118,627,874 INFO 2026-06-03 20:47:25 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr11:119,664,747 INFO 2026-06-03 20:47:26 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr11:120,137,471 INFO 2026-06-03 20:47:27 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr11:125,595,910 INFO 2026-06-03 20:47:28 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr11:130,189,836 INFO 2026-06-03 20:47:30 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr12:907,922 INFO 2026-06-03 20:47:31 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr12:6,235,490 INFO 2026-06-03 20:47:32 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr12:6,651,141 INFO 2026-06-03 20:47:33 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr12:7,070,336 INFO 2026-06-03 20:47:34 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr12:9,669,721 INFO 2026-06-03 20:47:35 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr12:13,213,532 INFO 2026-06-03 20:47:36 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr12:26,122,717 INFO 2026-06-03 20:47:37 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr12:42,375,045 INFO 2026-06-03 20:47:39 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr12:48,827,771 INFO 2026-06-03 20:47:40 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr12:49,129,549 INFO 2026-06-03 20:47:41 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr12:50,400,916 INFO 2026-06-03 20:47:42 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr12:52,449,776 INFO 2026-06-03 20:47:43 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr12:52,487,922 INFO 2026-06-03 20:47:44 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr12:52,492,976 INFO 2026-06-03 20:47:45 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr12:52,517,956 INFO 2026-06-03 20:47:46 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr12:53,018,863 INFO 2026-06-03 20:47:47 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr12:53,517,167 INFO 2026-06-03 20:47:48 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr12:55,719,149 INFO 2026-06-03 20:47:49 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr12:56,160,069 INFO 2026-06-03 20:47:51 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr12:56,644,825 INFO 2026-06-03 20:47:52 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr12:57,100,003 INFO 2026-06-03 20:47:53 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr12:57,195,015 INFO 2026-06-03 20:47:54 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr12:57,527,863 INFO 2026-06-03 20:47:55 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr12:66,134,419 INFO 2026-06-03 20:47:56 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr12:76,030,715 INFO 2026-06-03 20:47:57 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr12:92,842,545 INFO 2026-06-03 20:47:58 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr12:98,601,379 INFO 2026-06-03 20:48:00 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr12:105,330,881 INFO 2026-06-03 20:48:01 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr12:110,162,951 INFO 2026-06-03 20:48:02 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr12:111,933,825 INFO 2026-06-03 20:48:03 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr12:113,319,005 INFO 2026-06-03 20:48:04 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr12:120,198,958 INFO 2026-06-03 20:48:05 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr12:121,915,899 INFO 2026-06-03 20:48:06 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr12:123,404,918 INFO 2026-06-03 20:48:07 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 1s. Last read position: chr12:130,874,567 INFO 2026-06-03 20:48:08 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 1s. Last read position: chr12:132,801,824 INFO 2026-06-03 20:48:10 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr13:20,192,767 INFO 2026-06-03 20:48:11 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr13:29,535,992 INFO 2026-06-03 20:48:12 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr13:41,192,709 INFO 2026-06-03 20:48:13 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 1s. Last read position: chr13:48,411,994 INFO 2026-06-03 20:48:14 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 1s. Last read position: chr13:77,180,283 INFO 2026-06-03 20:48:15 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr13:108,479,882 INFO 2026-06-03 20:48:16 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 1s. Last read position: chr13:110,511,980 INFO 2026-06-03 20:48:17 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr14:21,022,877 INFO 2026-06-03 20:48:19 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 1s. Last read position: chr14:22,875,557 INFO 2026-06-03 20:48:20 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 1s. Last read position: chr14:24,098,479 INFO 2026-06-03 20:48:21 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 1s. Last read position: chr14:24,311,195 INFO 2026-06-03 20:48:22 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 1s. Last read position: chr14:33,950,451 INFO 2026-06-03 20:48:23 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 1s. Last read position: chr14:45,110,140 INFO 2026-06-03 20:48:24 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 1s. Last read position: chr14:51,701,125 INFO 2026-06-03 20:48:25 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 1s. Last read position: chr14:55,351,434 INFO 2026-06-03 20:48:26 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 1s. Last read position: chr14:63,990,414 INFO 2026-06-03 20:48:27 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 1s. Last read position: chr14:64,743,055 INFO 2026-06-03 20:48:29 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 1s. Last read position: chr14:69,768,162 INFO 2026-06-03 20:48:30 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 1s. Last read position: chr14:73,739,117 INFO 2026-06-03 20:48:31 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 1s. Last read position: chr14:76,778,945 INFO 2026-06-03 20:48:32 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 1s. Last read position: chr14:92,716,211 INFO 2026-06-03 20:48:33 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 1s. Last read position: chr14:102,016,843 INFO 2026-06-03 20:48:34 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 1s. Last read position: chr14:104,884,273 INFO 2026-06-03 20:48:35 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 1s. Last read position: chr14:105,643,359 INFO 2026-06-03 20:48:36 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,462 INFO 2026-06-03 20:48:37 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,614 INFO 2026-06-03 20:48:38 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 1s. Last read position: chr14:105,770,293 INFO 2026-06-03 20:48:40 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 1s. Last read position: chr15:22,851,765 INFO 2026-06-03 20:48:41 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 1s. Last read position: chr15:28,321,431 INFO 2026-06-03 20:48:42 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 1s. Last read position: chr15:34,341,967 INFO 2026-06-03 20:48:43 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 1s. Last read position: chr15:40,472,065 INFO 2026-06-03 20:48:44 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 1s. Last read position: chr15:41,711,224 INFO 2026-06-03 20:48:45 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 1s. Last read position: chr15:42,728,688 INFO 2026-06-03 20:48:46 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 1s. Last read position: chr15:43,801,730 INFO 2026-06-03 20:48:47 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 1s. Last read position: chr15:48,425,739 INFO 2026-06-03 20:48:48 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 1s. Last read position: chr15:52,383,174 INFO 2026-06-03 20:48:50 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 1s. Last read position: chr15:60,347,546 INFO 2026-06-03 20:48:51 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 1s. Last read position: chr15:64,129,994 INFO 2026-06-03 20:48:52 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 1s. Last read position: chr15:66,501,841 INFO 2026-06-03 20:48:53 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 1s. Last read position: chr15:72,206,854 INFO 2026-06-03 20:48:54 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 1s. Last read position: chr15:74,035,168 INFO 2026-06-03 20:48:55 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 1s. Last read position: chr15:75,617,527 INFO 2026-06-03 20:48:56 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr15:80,749,636 INFO 2026-06-03 20:48:57 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 1s. Last read position: chr15:85,207,028 INFO 2026-06-03 20:48:58 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 1s. Last read position: chr15:90,087,148 INFO 2026-06-03 20:49:00 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 1s. Last read position: chr15:92,937,603 INFO 2026-06-03 20:49:01 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr16:54,018 INFO 2026-06-03 20:49:02 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 1s. Last read position: chr16:1,220,379 INFO 2026-06-03 20:49:03 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr16:2,057,160 INFO 2026-06-03 20:49:04 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 1s. Last read position: chr16:2,757,553 INFO 2026-06-03 20:49:05 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr16:2,975,481 INFO 2026-06-03 20:49:06 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 1s. Last read position: chr16:4,609,678 INFO 2026-06-03 20:49:07 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 1s. Last read position: chr16:4,899,286 INFO 2026-06-03 20:49:08 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr16:14,210,242 INFO 2026-06-03 20:49:10 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr16:15,130,769 INFO 2026-06-03 20:49:11 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr16:16,348,712 INFO 2026-06-03 20:49:12 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr16:18,520,773 INFO 2026-06-03 20:49:13 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr16:21,404,781 INFO 2026-06-03 20:49:14 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr16:21,891,914 INFO 2026-06-03 20:49:15 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr16:23,388,998 INFO 2026-06-03 20:49:16 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr16:28,169,848 INFO 2026-06-03 20:49:17 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr16:29,383,995 INFO 2026-06-03 20:49:18 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr16:29,844,765 INFO 2026-06-03 20:49:19 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr16:30,070,161 INFO 2026-06-03 20:49:20 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr16:30,417,932 INFO 2026-06-03 20:49:21 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr16:30,958,100 INFO 2026-06-03 20:49:23 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr16:31,191,444 INFO 2026-06-03 20:49:24 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr16:51,646,718 INFO 2026-06-03 20:49:25 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr16:57,069,861 INFO 2026-06-03 20:49:26 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr16:58,709,544 INFO 2026-06-03 20:49:27 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr16:67,645,549 INFO 2026-06-03 20:49:28 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr16:68,684,794 INFO 2026-06-03 20:49:29 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr16:69,626,446 INFO 2026-06-03 20:49:30 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr16:71,734,609 INFO 2026-06-03 20:49:32 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr16:75,568,199 INFO 2026-06-03 20:49:33 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr16:85,634,066 INFO 2026-06-03 20:49:34 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr16:88,722,240 INFO 2026-06-03 20:49:35 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr16:89,695,310 INFO 2026-06-03 20:49:36 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr17:1,361,099 INFO 2026-06-03 20:49:37 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr17:1,726,794 INFO 2026-06-03 20:49:38 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr17:3,941,273 INFO 2026-06-03 20:49:39 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr17:4,896,708 INFO 2026-06-03 20:49:40 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr17:7,038,380 INFO 2026-06-03 20:49:42 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr17:7,417,150 INFO 2026-06-03 20:49:43 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr17:7,579,629 INFO 2026-06-03 20:49:44 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr17:8,228,187 INFO 2026-06-03 20:49:45 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr17:15,651,316 INFO 2026-06-03 20:49:46 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr17:17,811,663 INFO 2026-06-03 20:49:47 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr17:18,798,903 INFO 2026-06-03 20:49:48 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr17:27,642,285 INFO 2026-06-03 20:49:49 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr17:28,748,331 INFO 2026-06-03 20:49:50 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr17:30,922,018 INFO 2026-06-03 20:49:52 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr17:35,259,064 INFO 2026-06-03 20:49:53 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr17:36,509,075 INFO 2026-06-03 20:49:54 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr17:38,469,144 INFO 2026-06-03 20:49:55 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr17:39,707,032 INFO 2026-06-03 20:49:56 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr17:40,260,578 INFO 2026-06-03 20:49:57 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr17:41,502,500 INFO 2026-06-03 20:49:58 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr17:41,505,257 INFO 2026-06-03 20:49:59 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr17:41,515,978 INFO 2026-06-03 20:50:00 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr17:41,518,667 INFO 2026-06-03 20:50:01 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr17:41,619,528 INFO 2026-06-03 20:50:02 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr17:41,689,786 INFO 2026-06-03 20:50:04 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr17:41,968,390 INFO 2026-06-03 20:50:05 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr17:42,718,460 INFO 2026-06-03 20:50:06 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr17:44,349,469 INFO 2026-06-03 20:50:07 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr17:45,518,050 INFO 2026-06-03 20:50:08 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr17:47,676,462 INFO 2026-06-03 20:50:09 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr17:50,088,095 INFO 2026-06-03 20:50:10 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,522 INFO 2026-06-03 20:50:11 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,376 INFO 2026-06-03 20:50:13 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,882 INFO 2026-06-03 20:50:14 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,018 INFO 2026-06-03 20:50:15 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,046 INFO 2026-06-03 20:50:16 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,339 INFO 2026-06-03 20:50:17 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,263 INFO 2026-06-03 20:50:18 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr17:51,268,882 INFO 2026-06-03 20:50:20 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr17:59,660,544 INFO 2026-06-03 20:50:21 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr17:61,401,859 INFO 2026-06-03 20:50:22 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr17:64,213,379 INFO 2026-06-03 20:50:23 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr17:68,126,733 INFO 2026-06-03 20:50:24 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr17:75,093,700 INFO 2026-06-03 20:50:25 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr17:75,730,311 INFO 2026-06-03 20:50:26 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr17:75,948,307 INFO 2026-06-03 20:50:27 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr17:76,685,109 INFO 2026-06-03 20:50:29 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr17:80,273,388 INFO 2026-06-03 20:50:30 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr17:81,565,531 INFO 2026-06-03 20:50:31 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr17:82,089,125 INFO 2026-06-03 20:50:32 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr18:2,694,543 INFO 2026-06-03 20:50:33 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr18:12,325,647 INFO 2026-06-03 20:50:34 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr18:26,035,062 INFO 2026-06-03 20:50:35 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr18:31,458,571 INFO 2026-06-03 20:50:36 SinglePassSamProgram Processed 532,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr18:35,683,459 INFO 2026-06-03 20:50:37 SinglePassSamProgram Processed 533,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr18:49,878,965 INFO 2026-06-03 20:50:39 SinglePassSamProgram Processed 534,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr18:58,366,190 INFO 2026-06-03 20:50:40 SinglePassSamProgram Processed 535,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr18:63,344,419 INFO 2026-06-03 20:50:41 SinglePassSamProgram Processed 536,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr18:63,903,081 INFO 2026-06-03 20:50:42 SinglePassSamProgram Processed 537,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr19:580,647 INFO 2026-06-03 20:50:43 SinglePassSamProgram Processed 538,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr19:1,084,279 INFO 2026-06-03 20:50:44 SinglePassSamProgram Processed 539,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr19:1,475,005 INFO 2026-06-03 20:50:45 SinglePassSamProgram Processed 540,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr19:2,123,852 INFO 2026-06-03 20:50:46 SinglePassSamProgram Processed 541,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr19:3,453,819 INFO 2026-06-03 20:50:47 SinglePassSamProgram Processed 542,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr19:4,499,595 INFO 2026-06-03 20:50:49 SinglePassSamProgram Processed 543,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr19:5,679,367 INFO 2026-06-03 20:50:50 SinglePassSamProgram Processed 544,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr19:5,923,222 INFO 2026-06-03 20:50:51 SinglePassSamProgram Processed 545,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr19:7,612,141 INFO 2026-06-03 20:50:52 SinglePassSamProgram Processed 546,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr19:8,939,033 INFO 2026-06-03 20:50:53 SinglePassSamProgram Processed 547,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr19:10,284,198 INFO 2026-06-03 20:50:54 SinglePassSamProgram Processed 548,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr19:10,908,053 INFO 2026-06-03 20:50:55 SinglePassSamProgram Processed 549,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr19:11,925,134 INFO 2026-06-03 20:50:56 SinglePassSamProgram Processed 550,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr19:12,940,620 INFO 2026-06-03 20:50:57 SinglePassSamProgram Processed 551,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr19:14,159,510 INFO 2026-06-03 20:50:59 SinglePassSamProgram Processed 552,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr19:15,161,371 INFO 2026-06-03 20:51:00 SinglePassSamProgram Processed 553,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr19:15,254,152 INFO 2026-06-03 20:51:01 SinglePassSamProgram Processed 554,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr19:16,525,561 INFO 2026-06-03 20:51:02 SinglePassSamProgram Processed 555,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr19:17,861,313 INFO 2026-06-03 20:51:03 SinglePassSamProgram Processed 556,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr19:18,856,032 INFO 2026-06-03 20:51:04 SinglePassSamProgram Processed 557,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr19:31,276,498 INFO 2026-06-03 20:51:05 SinglePassSamProgram Processed 558,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr19:35,116,234 INFO 2026-06-03 20:51:06 SinglePassSamProgram Processed 559,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr19:35,637,162 INFO 2026-06-03 20:51:08 SinglePassSamProgram Processed 560,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr19:38,283,649 INFO 2026-06-03 20:51:09 SinglePassSamProgram Processed 561,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr19:38,845,910 INFO 2026-06-03 20:51:10 SinglePassSamProgram Processed 562,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr19:39,879,749 INFO 2026-06-03 20:51:11 SinglePassSamProgram Processed 563,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr19:40,717,974 INFO 2026-06-03 20:51:12 SinglePassSamProgram Processed 564,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr19:41,762,088 INFO 2026-06-03 20:51:13 SinglePassSamProgram Processed 565,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr19:42,290,311 INFO 2026-06-03 20:51:14 SinglePassSamProgram Processed 566,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr19:43,464,407 INFO 2026-06-03 20:51:15 SinglePassSamProgram Processed 567,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr19:45,069,066 INFO 2026-06-03 20:51:16 SinglePassSamProgram Processed 568,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr19:45,885,176 INFO 2026-06-03 20:51:18 SinglePassSamProgram Processed 569,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr19:47,680,523 INFO 2026-06-03 20:51:19 SinglePassSamProgram Processed 570,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr19:48,873,299 INFO 2026-06-03 20:51:20 SinglePassSamProgram Processed 571,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr19:49,489,860 INFO 2026-06-03 20:51:21 SinglePassSamProgram Processed 572,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr19:49,806,122 INFO 2026-06-03 20:51:22 SinglePassSamProgram Processed 573,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr19:51,341,895 INFO 2026-06-03 20:51:23 SinglePassSamProgram Processed 574,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr19:54,206,399 INFO 2026-06-03 20:51:24 SinglePassSamProgram Processed 575,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr19:55,486,996 INFO 2026-06-03 20:51:25 SinglePassSamProgram Processed 576,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr19:58,387,287 INFO 2026-06-03 20:51:26 SinglePassSamProgram Processed 577,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr20:2,462,740 INFO 2026-06-03 20:51:28 SinglePassSamProgram Processed 578,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr20:5,115,452 INFO 2026-06-03 20:51:29 SinglePassSamProgram Processed 579,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr20:17,968,221 INFO 2026-06-03 20:51:30 SinglePassSamProgram Processed 580,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr20:31,554,747 INFO 2026-06-03 20:51:31 SinglePassSamProgram Processed 581,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr20:34,741,617 INFO 2026-06-03 20:51:32 SinglePassSamProgram Processed 582,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr20:36,188,414 INFO 2026-06-03 20:51:33 SinglePassSamProgram Processed 583,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr20:39,028,486 INFO 2026-06-03 20:51:34 SinglePassSamProgram Processed 584,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr20:45,253,113 INFO 2026-06-03 20:51:35 SinglePassSamProgram Processed 585,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr20:47,210,767 INFO 2026-06-03 20:51:36 SinglePassSamProgram Processed 586,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr20:50,891,365 INFO 2026-06-03 20:51:38 SinglePassSamProgram Processed 587,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr20:58,891,854 INFO 2026-06-03 20:51:39 SinglePassSamProgram Processed 588,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr20:62,315,115 INFO 2026-06-03 20:51:40 SinglePassSamProgram Processed 589,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr20:62,910,917 INFO 2026-06-03 20:51:41 SinglePassSamProgram Processed 590,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr21:5,034,001 INFO 2026-06-03 20:51:42 SinglePassSamProgram Processed 591,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,912 INFO 2026-06-03 20:51:43 SinglePassSamProgram Processed 592,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,570 INFO 2026-06-03 20:51:44 SinglePassSamProgram Processed 593,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr21:29,042,058 INFO 2026-06-03 20:51:45 SinglePassSamProgram Processed 594,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr21:33,552,345 INFO 2026-06-03 20:51:46 SinglePassSamProgram Processed 595,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr21:38,299,373 INFO 2026-06-03 20:51:47 SinglePassSamProgram Processed 596,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr21:43,066,278 INFO 2026-06-03 20:51:49 SinglePassSamProgram Processed 597,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr21:44,234,200 INFO 2026-06-03 20:51:50 SinglePassSamProgram Processed 598,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr21:45,992,012 INFO 2026-06-03 20:51:51 SinglePassSamProgram Processed 599,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr21:46,644,338 INFO 2026-06-03 20:51:52 SinglePassSamProgram Processed 600,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr22:20,141,332 INFO 2026-06-03 20:51:53 SinglePassSamProgram Processed 601,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr22:22,921,418 INFO 2026-06-03 20:51:54 SinglePassSamProgram Processed 602,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr22:24,091,651 INFO 2026-06-03 20:51:55 SinglePassSamProgram Processed 603,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr22:29,278,003 INFO 2026-06-03 20:51:56 SinglePassSamProgram Processed 604,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr22:30,013,439 INFO 2026-06-03 20:51:58 SinglePassSamProgram Processed 605,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr22:32,498,315 INFO 2026-06-03 20:51:59 SinglePassSamProgram Processed 606,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr22:36,288,786 INFO 2026-06-03 20:52:00 SinglePassSamProgram Processed 607,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr22:37,296,010 INFO 2026-06-03 20:52:01 SinglePassSamProgram Processed 608,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr22:37,944,422 INFO 2026-06-03 20:52:02 SinglePassSamProgram Processed 609,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr22:38,962,133 INFO 2026-06-03 20:52:03 SinglePassSamProgram Processed 610,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr22:41,117,727 INFO 2026-06-03 20:52:04 SinglePassSamProgram Processed 611,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr22:41,870,941 INFO 2026-06-03 20:52:05 SinglePassSamProgram Processed 612,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr22:43,168,116 INFO 2026-06-03 20:52:06 SinglePassSamProgram Processed 613,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr22:46,658,184 INFO 2026-06-03 20:52:07 SinglePassSamProgram Processed 614,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr22:50,447,223 INFO 2026-06-03 20:52:09 SinglePassSamProgram Processed 615,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr22:50,579,170 INFO 2026-06-03 20:52:10 SinglePassSamProgram Processed 616,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chrX:9,688,036 INFO 2026-06-03 20:52:11 SinglePassSamProgram Processed 617,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chrX:23,783,864 INFO 2026-06-03 20:52:12 SinglePassSamProgram Processed 618,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chrX:41,170,157 INFO 2026-06-03 20:52:13 SinglePassSamProgram Processed 619,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chrX:47,242,471 INFO 2026-06-03 20:52:14 SinglePassSamProgram Processed 620,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chrX:49,067,510 INFO 2026-06-03 20:52:15 SinglePassSamProgram Processed 621,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chrX:53,552,638 INFO 2026-06-03 20:52:16 SinglePassSamProgram Processed 622,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chrX:68,063,962 INFO 2026-06-03 20:52:18 SinglePassSamProgram Processed 623,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chrX:74,594,372 INFO 2026-06-03 20:52:19 SinglePassSamProgram Processed 624,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chrX:100,676,058 INFO 2026-06-03 20:52:20 SinglePassSamProgram Processed 625,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chrX:118,580,097 INFO 2026-06-03 20:52:21 SinglePassSamProgram Processed 626,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chrX:130,402,000 INFO 2026-06-03 20:52:22 SinglePassSamProgram Processed 627,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chrX:152,700,897 INFO 2026-06-03 20:52:23 SinglePassSamProgram Processed 628,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chrX:153,951,623 INFO 2026-06-03 20:52:24 SinglePassSamProgram Processed 629,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chrX:154,360,559 INFO 2026-06-03 20:52:25 SinglePassSamProgram Processed 630,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chrX:154,562,855 INFO 2026-06-03 20:52:26 SinglePassSamProgram Processed 631,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,153 INFO 2026-06-03 20:52:27 SinglePassSamProgram Processed 632,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: KI270733.1:129,677 INFO 2026-06-03 20:52:29 RExecutor Executing R script via command: Rscript /tmp/script203608454156975086.R /tmp/nxf.XXXXwQxD5P/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1_collectinsertsize.txt /tmp/nxf.XXXXwQxD5P/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1_collectinsertsize.pdf aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam ERROR 2026-06-03 20:52:29 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:52:29 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:52:29 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:52:29 ProcessExecutor During startup - Warning messages: ERROR 2026-06-03 20:52:29 ProcessExecutor 1: Setting LC_CTYPE failed, using "C" ERROR 2026-06-03 20:52:29 ProcessExecutor 2: Setting LC_COLLATE failed, using "C" ERROR 2026-06-03 20:52:29 ProcessExecutor 3: Setting LC_TIME failed, using "C" ERROR 2026-06-03 20:52:29 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C" ERROR 2026-06-03 20:52:29 ProcessExecutor 5: Setting LC_MONETARY failed, using "C" ERROR 2026-06-03 20:52:29 ProcessExecutor 6: Setting LC_PAPER failed, using "C" ERROR 2026-06-03 20:52:29 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C" INFO 2026-06-03 20:52:29 ProcessExecutor null device INFO 2026-06-03 20:52:29 ProcessExecutor 1 ERROR 2026-06-03 20:52:29 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) [Wed Jun 03 20:52:29 GMT 2026] picard.analysis.CollectInsertSizeMetrics done. Elapsed time: 11.74 minutes. Runtime.totalMemory()=205520896