File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/9dcb630cedddd4e37635327e61eb00/.command.log
Size
3.0 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-5b8b4a-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/fa91eb5ba115ddb590bc9d22717cb3/aih-tih-sc-5b8b4a-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e543dae6-5fea-4720-bfb6-150bf1ff20d4/82/1bfcba5045fc10a52ca200a4890a9a/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/9dcb630cedddd4e37635327e61eb00/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/a238eeeed44667f86321cdb8eec64b/aih-tih-sc-5b8b4a-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/9dcb630cedddd4e37635327e61eb00/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
AC007663.1--ESS2
starfusion
arriba
CMTR1--AIF1
starfusion
arriba
AC013268.1--MALL
starfusion
PDCD6--LRRC14B
starfusion
TLK2--AC240565.1
starfusion
AL079338.1--LRRC41
starfusion
TVP23C--CDRT4
arriba
STX16--NPEPL1
arriba
PDCD6--PLEKHG4B
arriba
KLRC4--KLRK1
arriba

  0%|          | 0/10 [00:00<?, ?it/s]
Processing AC007663.1--ESS2:   0%|          | 0/10 [00:00<?, ?it/s]
Processing AC007663.1--ESS2:  10%|█         | 1/10 [00:00<00:00,  9.01it/s]
Processing CMTR1--AIF1:  10%|█         | 1/10 [00:00<00:00,  9.01it/s]     
Processing CMTR1--AIF1:  20%|██        | 2/10 [00:00<00:00,  9.27it/s]
Processing AC013268.1--MALL:  20%|██        | 2/10 [00:00<00:00,  9.27it/s]
Processing AC013268.1--MALL:  30%|███       | 3/10 [00:00<00:00,  9.36it/s]
Processing PDCD6--LRRC14B:  30%|███       | 3/10 [00:00<00:00,  9.36it/s]  
Processing PDCD6--LRRC14B:  40%|████      | 4/10 [00:00<00:00,  9.40it/s]
Processing TLK2--AC240565.1:  40%|████      | 4/10 [00:00<00:00,  9.40it/s]
Processing TLK2--AC240565.1:  50%|█████     | 5/10 [00:00<00:00,  9.33it/s]
Processing AL079338.1--LRRC41:  50%|█████     | 5/10 [00:00<00:00,  9.33it/s]
Processing AL079338.1--LRRC41:  60%|██████    | 6/10 [00:00<00:00,  9.38it/s]
Processing TVP23C--CDRT4:  60%|██████    | 6/10 [00:00<00:00,  9.38it/s]     
Processing TVP23C--CDRT4:  70%|███████   | 7/10 [00:00<00:00,  9.41it/s]
Processing STX16--NPEPL1:  70%|███████   | 7/10 [00:00<00:00,  9.41it/s]
Processing STX16--NPEPL1:  80%|████████  | 8/10 [00:00<00:00,  9.43it/s]
Processing PDCD6--PLEKHG4B:  80%|████████  | 8/10 [00:00<00:00,  9.43it/s]
Processing PDCD6--PLEKHG4B:  90%|█████████ | 9/10 [00:00<00:00,  9.45it/s]
Processing KLRC4--KLRK1:  90%|█████████ | 9/10 [00:00<00:00,  9.45it/s]   
Processing KLRC4--KLRK1: 100%|██████████| 10/10 [00:01<00:00,  9.44it/s]
Processing KLRC4--KLRK1: 100%|██████████| 10/10 [00:01<00:00,  9.39it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory