File Info
- Filename
- aih-tih-sc-5b8b4a-R1_A23YTGFLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/9dcb630cedddd4e37635327e61eb00/aih-tih-sc-5b8b4a-R1_A23YTGFLT4_1.fusions.csv
- Size
- 2.2 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-5b8b4a-R1_A23YTGFLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| AC007663.1--ESS2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr22:20309388#chr22:19142894,reading-frame: .,type: inversion,split_reads1: 6,split_reads2: 44,discordant_mates: 0,coverage1: 151,coverage2: 1312,confidence: high | position: chr22:20309388:+#chr22:19142894:-,junction_reads: 65,spanning_reads: 0,ffmp: 0.1589 | |
| CMTR1--AIF1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr6:37446449#chr6:31615521,reading-frame: out-of-frame,type: duplication,split_reads1: 17,split_reads2: 35,discordant_mates: 0,coverage1: 953,coverage2: 1449,confidence: high | position: chr6:37446449:+#chr6:31615521:+,junction_reads: 55,spanning_reads: 0,ffmp: 0.1855 | |
| AC013268.1--MALL | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr2:109947845:+#chr2:110091770:-,junction_reads: 29,spanning_reads: 0,ffmp: 0.0489 | ||
| PDCD6--LRRC14B | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:272772:+#chr5:194708:+,junction_reads: 23,spanning_reads: 0,ffmp: 0.0776 | ||
| TLK2--AC240565.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126:+#chr17:106864:-,junction_reads: 12,spanning_reads: 0,ffmp: 0.0117 | ||
| AL079338.1--LRRC41 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr20:15985503:-#chr1:46298370:-,junction_reads: 11,spanning_reads: 0,ffmp: 0.0371 | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 64,split_reads2: 91,discordant_mates: 1,coverage1: 1110,coverage2: 519,confidence: high | |
| STX16--NPEPL1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr20:58673711#chr20:58691724,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 34,split_reads2: 38,discordant_mates: 0,coverage1: 1881,coverage2: 485,confidence: high | ||
| PDCD6--PLEKHG4B | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:272772#chr5:188583,reading-frame: out-of-frame,type: duplication,split_reads1: 28,split_reads2: 15,discordant_mates: 0,coverage1: 4266,coverage2: 49,confidence: high | ||
| KLRC4--KLRK1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:10407636#chr12:10388875,reading-frame: stop-codon,type: deletion/read-through,split_reads1: 19,split_reads2: 18,discordant_mates: 1,coverage1: 323,coverage2: 591,confidence: high |
11 rows