Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/d7c1d3223983082b52b8885f1a9de1/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/d7c1d3223983082b52b8885f1a9de1/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/blacklist_breakpoint_database_2026-04-27.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/62448c1ccf9b95945404551824d745/aih-tih-sc-0754d2-R1_A23YTGFLT4_1.arriba.fusions.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e543dae6-5fea-4720-bfb6-150bf1ff20d4/33/a04540cea7c8abc13163bc03b147d5/arriba_filter_config.yaml
==> STAGING COMPLETE (5 inputs)

  AIH curated blacklist: matched 0 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 16
  Pass (FILTER=PASS): 1 (6.2%)
  Fail (FILTER=FAIL): 15 (93.8%)

Failure reasons (top 15):
  confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 4
  confidence_below_min(low<high): 3
  total_reads_below_min(2.0<8.0): 2
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 2
  confidence_below_min(medium<high): 1
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 1
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 1
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 1

Breakdown by confidence:
  high: 1 pass, 2 fail (total: 3)
  low: 0 pass, 7 fail (total: 7)
  medium: 0 pass, 6 fail (total: 6)
Arriba filter: 16 rows -> 1 PASS; wrote aih-tih-sc-0754d2-R1_A23YTGFLT4_1.arriba.fusions.filtered.tsv and aih-tih-sc-0754d2-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: aih-tih-sc-0754d2-R1_A23YTGFLT4_1.arriba.fusions.filter_summary.txt