Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/db0390e137cf3062481f869034d2c8/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/3e1262c16b927be54d65eff5af302e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/3e1262c16b927be54d65eff5af302e/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/3522bf601c26992c2b67a12656ce68/aih-tih-sc-01c779-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/d672a47a266010b96e49181ec6830a/aih-tih-sc-01c779-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 262848966
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-01c779-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	262848966
Known Splicing Events:	260209210
Partial Novel Splicing Events:	1489642
Novel Splicing Events:	1038072
Filtered Splicing Events:	112042

Total splicing  Junctions:	538363
Known Splicing Junctions:	263232
Partial Novel Splicing Junctions:	143289
Novel Splicing Junctions:	131842

===================================================================
Create BED file ...
Create Interact file ...