Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/0b99ad1fa39c334c237635b934f8a1/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/da9dd178c5c216644dfa0d72c2ff44/aih-tih-sc-3377ac-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/0b99ad1fa39c334c237635b934f8a1/.command.run ==> STAGING COMPLETE (3 inputs) /usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory INFO 2026-06-03 20:13:50 RExecutor Executing R script via command: Rscript /tmp/script6394600610948841854.R ERROR 2026-06-03 20:13:50 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:13:50 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:13:50 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:13:50 ProcessExecutor During startup - Warning messages: ERROR 2026-06-03 20:13:50 ProcessExecutor 1: Setting LC_CTYPE failed, using "C" ERROR 2026-06-03 20:13:50 ProcessExecutor 2: Setting LC_COLLATE failed, using "C" ERROR 2026-06-03 20:13:50 ProcessExecutor 3: Setting LC_TIME failed, using "C" ERROR 2026-06-03 20:13:50 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C" ERROR 2026-06-03 20:13:50 ProcessExecutor 5: Setting LC_MONETARY failed, using "C" ERROR 2026-06-03 20:13:50 ProcessExecutor 6: Setting LC_PAPER failed, using "C" ERROR 2026-06-03 20:13:50 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C" INFO 2026-06-03 20:13:50 ProcessExecutor [1] "Checking if R is installed" ERROR 2026-06-03 20:13:50 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) Jun 03, 2026 8:13:50 PM com.intel.gkl.NativeLibraryLoader load INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so [Wed Jun 03 20:13:50 GMT 2026] CollectInsertSizeMetrics --Histogram_FILE aih-tih-sc-3377ac-R1_A23YTGFLT4_1_collectinsertsize.pdf --INPUT aih-tih-sc-3377ac-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-3377ac-R1_A23YTGFLT4_1_collectinsertsize.txt --DEVIATIONS 10.0 --MINIMUM_PCT 0.05 --METRIC_ACCUMULATION_LEVEL ALL_READS --INCLUDE_DUPLICATES false --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Wed Jun 03 20:13:51 GMT 2026] Executing as ?@nf-c30b99ad1fa39c334c237635b934f8a1-7af69-7p7xr on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0 INFO 2026-06-03 20:13:52 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:01s. Time for last 1,000,000: 1s. Last read position: chr1:1,295,520 INFO 2026-06-03 20:13:53 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 1s. Last read position: chr1:1,674,675 INFO 2026-06-03 20:13:54 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 1s. Last read position: chr1:6,225,118 INFO 2026-06-03 20:13:56 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 1s. Last read position: chr1:9,263,794 INFO 2026-06-03 20:13:57 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:11,788,662 INFO 2026-06-03 20:13:58 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 1s. Last read position: chr1:15,933,423 INFO 2026-06-03 20:13:59 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 1s. Last read position: chr1:16,986,162 INFO 2026-06-03 20:14:00 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 1s. Last read position: chr1:19,655,324 INFO 2026-06-03 20:14:01 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:21,833,363 INFO 2026-06-03 20:14:02 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:21,872,635 INFO 2026-06-03 20:14:03 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 1s. Last read position: chr1:23,057,552 INFO 2026-06-03 20:14:04 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 1s. Last read position: chr1:25,863,063 INFO 2026-06-03 20:14:05 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 1s. Last read position: chr1:27,547,966 INFO 2026-06-03 20:14:06 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 1s. Last read position: chr1:31,583,221 INFO 2026-06-03 20:14:08 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:32,170,813 INFO 2026-06-03 20:14:09 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 1s. Last read position: chr1:34,794,831 INFO 2026-06-03 20:14:10 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:36,322,601 INFO 2026-06-03 20:14:11 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:39,442,479 INFO 2026-06-03 20:14:12 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:42,205,819 INFO 2026-06-03 20:14:13 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 1s. Last read position: chr1:43,958,809 INFO 2026-06-03 20:14:14 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:47,219,280 INFO 2026-06-03 20:14:15 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 1s. Last read position: chr1:54,616,008 INFO 2026-06-03 20:14:16 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 1s. Last read position: chr1:70,189,259 INFO 2026-06-03 20:14:17 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:89,583,766 INFO 2026-06-03 20:14:18 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 1s. Last read position: chr1:101,786,299 INFO 2026-06-03 20:14:20 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:109,495,165 INFO 2026-06-03 20:14:21 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:113,651,152 INFO 2026-06-03 20:14:22 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:116,984,819 INFO 2026-06-03 20:14:23 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:119,949,090 INFO 2026-06-03 20:14:24 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:120,814,971 INFO 2026-06-03 20:14:25 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:145,912,401 INFO 2026-06-03 20:14:26 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:146,969,528 INFO 2026-06-03 20:14:27 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:148,589,333 INFO 2026-06-03 20:14:28 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:149,488,107 INFO 2026-06-03 20:14:29 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:149,944,514 INFO 2026-06-03 20:14:30 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:150,963,009 INFO 2026-06-03 20:14:32 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:151,760,013 INFO 2026-06-03 20:14:33 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:154,157,638 INFO 2026-06-03 20:14:34 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:154,601,414 INFO 2026-06-03 20:14:35 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:155,236,388 INFO 2026-06-03 20:14:36 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:155,961,672 INFO 2026-06-03 20:14:37 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:156,137,015 INFO 2026-06-03 20:14:38 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:156,700,052 INFO 2026-06-03 20:14:39 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:160,293,166 INFO 2026-06-03 20:14:40 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:162,023,280 INFO 2026-06-03 20:14:41 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:169,992,195 INFO 2026-06-03 20:14:42 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:178,852,752 INFO 2026-06-03 20:14:43 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:183,114,561 INFO 2026-06-03 20:14:45 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:186,335,068 INFO 2026-06-03 20:14:46 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:201,718,707 INFO 2026-06-03 20:14:47 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:203,739,576 INFO 2026-06-03 20:14:48 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:206,685,272 INFO 2026-06-03 20:14:49 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:214,464,736 INFO 2026-06-03 20:14:50 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:225,514,720 INFO 2026-06-03 20:14:51 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:228,321,525 INFO 2026-06-03 20:14:52 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:235,981,728 INFO 2026-06-03 20:14:53 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:246,724,472 INFO 2026-06-03 20:14:55 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr2:9,481,384 INFO 2026-06-03 20:14:56 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr2:20,290,654 INFO 2026-06-03 20:14:57 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr2:27,055,682 INFO 2026-06-03 20:14:58 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr2:28,788,699 INFO 2026-06-03 20:14:59 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264 INFO 2026-06-03 20:15:00 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406 INFO 2026-06-03 20:15:01 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr2:36,537,395 INFO 2026-06-03 20:15:02 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr2:43,700,253 INFO 2026-06-03 20:15:03 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr2:54,631,057 INFO 2026-06-03 20:15:04 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr2:61,482,985 INFO 2026-06-03 20:15:06 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr2:69,829,988 INFO 2026-06-03 20:15:07 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr2:74,047,931 INFO 2026-06-03 20:15:08 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr2:85,363,138 INFO 2026-06-03 20:15:09 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr2:89,580,571 INFO 2026-06-03 20:15:10 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr2:97,267,640 INFO 2026-06-03 20:15:11 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr2:100,007,314 INFO 2026-06-03 20:15:12 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr2:108,746,768 INFO 2026-06-03 20:15:13 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr2:110,567,517 INFO 2026-06-03 20:15:14 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr2:120,222,247 INFO 2026-06-03 20:15:15 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr2:131,126,758 INFO 2026-06-03 20:15:16 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr2:131,629,599 INFO 2026-06-03 20:15:17 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr2:144,400,242 INFO 2026-06-03 20:15:19 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr2:162,005,797 INFO 2026-06-03 20:15:20 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr2:173,913,092 INFO 2026-06-03 20:15:21 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr2:182,926,859 INFO 2026-06-03 20:15:22 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr2:188,991,032 INFO 2026-06-03 20:15:23 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr2:188,996,133 INFO 2026-06-03 20:15:24 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr2:189,002,313 INFO 2026-06-03 20:15:25 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr2:189,008,035 INFO 2026-06-03 20:15:27 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr2:189,045,845 INFO 2026-06-03 20:15:28 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr2:189,564,006 INFO 2026-06-03 20:15:29 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr2:200,903,543 INFO 2026-06-03 20:15:30 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr2:208,355,229 INFO 2026-06-03 20:15:31 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr2:215,364,892 INFO 2026-06-03 20:15:32 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr2:215,371,981 INFO 2026-06-03 20:15:33 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr2:215,373,373 INFO 2026-06-03 20:15:34 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr2:215,376,626 INFO 2026-06-03 20:15:36 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr2:215,382,212 INFO 2026-06-03 20:15:37 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr2:215,386,899 INFO 2026-06-03 20:15:38 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr2:215,397,736 INFO 2026-06-03 20:15:39 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr2:215,407,124 INFO 2026-06-03 20:15:40 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr2:215,409,951 INFO 2026-06-03 20:15:41 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr2:215,422,163 INFO 2026-06-03 20:15:42 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr2:215,428,211 INFO 2026-06-03 20:15:43 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr2:215,434,765 INFO 2026-06-03 20:15:44 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr2:217,804,554 INFO 2026-06-03 20:15:45 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr2:219,210,678 INFO 2026-06-03 20:15:47 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr2:227,330,737 INFO 2026-06-03 20:15:48 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr2:232,681,635 INFO 2026-06-03 20:15:49 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr2:237,340,726 INFO 2026-06-03 20:15:50 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr2:237,357,347 INFO 2026-06-03 20:15:51 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr2:237,371,721 INFO 2026-06-03 20:15:52 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:237,378,692 INFO 2026-06-03 20:15:53 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:237,552,373 INFO 2026-06-03 20:15:54 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:241,239,749 INFO 2026-06-03 20:15:56 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr3:4,983,578 INFO 2026-06-03 20:15:57 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr3:12,585,720 INFO 2026-06-03 20:15:58 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr3:15,053,411 INFO 2026-06-03 20:15:59 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr3:32,756,844 INFO 2026-06-03 20:16:00 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr3:39,411,979 INFO 2026-06-03 20:16:01 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr3:44,997,227 INFO 2026-06-03 20:16:02 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr3:47,848,491 INFO 2026-06-03 20:16:03 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr3:48,772,995 INFO 2026-06-03 20:16:04 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr3:49,132,591 INFO 2026-06-03 20:16:05 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr3:50,185,489 INFO 2026-06-03 20:16:07 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr3:52,352,090 INFO 2026-06-03 20:16:08 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr3:53,858,809 INFO 2026-06-03 20:16:09 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr3:58,138,477 INFO 2026-06-03 20:16:10 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr3:69,085,060 INFO 2026-06-03 20:16:11 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr3:100,196,745 INFO 2026-06-03 20:16:12 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr3:112,639,268 INFO 2026-06-03 20:16:13 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr3:121,697,006 INFO 2026-06-03 20:16:14 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr3:127,005,095 INFO 2026-06-03 20:16:15 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr3:129,464,678 INFO 2026-06-03 20:16:17 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr3:136,002,587 INFO 2026-06-03 20:16:18 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr3:148,834,512 INFO 2026-06-03 20:16:19 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr3:152,445,286 INFO 2026-06-03 20:16:20 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr3:172,307,479 INFO 2026-06-03 20:16:21 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr3:184,303,990 INFO 2026-06-03 20:16:22 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr3:188,609,339 INFO 2026-06-03 20:16:23 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr3:196,248,260 INFO 2026-06-03 20:16:24 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr4:991,295 INFO 2026-06-03 20:16:25 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr4:1,805,404 INFO 2026-06-03 20:16:27 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr4:3,131,725 INFO 2026-06-03 20:16:28 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr4:7,728,396 INFO 2026-06-03 20:16:29 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr4:17,803,476 INFO 2026-06-03 20:16:30 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr4:40,243,580 INFO 2026-06-03 20:16:31 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr4:54,290,472 INFO 2026-06-03 20:16:32 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr4:73,139,739 INFO 2026-06-03 20:16:33 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr4:82,866,845 INFO 2026-06-03 20:16:34 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr4:89,247,853 INFO 2026-06-03 20:16:35 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr4:112,145,657 INFO 2026-06-03 20:16:37 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr4:124,671,468 INFO 2026-06-03 20:16:38 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr4:140,643,771 INFO 2026-06-03 20:16:39 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr4:150,761,817 INFO 2026-06-03 20:16:40 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr4:155,713,481 INFO 2026-06-03 20:16:41 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr4:174,491,249 INFO 2026-06-03 20:16:42 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr5:1,318,290 INFO 2026-06-03 20:16:43 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr5:14,387,527 INFO 2026-06-03 20:16:44 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr5:32,239,115 INFO 2026-06-03 20:16:45 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr5:42,719,097 INFO 2026-06-03 20:16:46 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr5:62,363,693 INFO 2026-06-03 20:16:48 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr5:71,199,793 INFO 2026-06-03 20:16:49 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr5:78,984,971 INFO 2026-06-03 20:16:50 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr5:83,519,524 INFO 2026-06-03 20:16:51 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr5:93,722,540 INFO 2026-06-03 20:16:52 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr5:113,101,871 INFO 2026-06-03 20:16:53 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr5:132,486,613 INFO 2026-06-03 20:16:54 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr5:136,153,701 INFO 2026-06-03 20:16:55 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr5:139,389,804 INFO 2026-06-03 20:16:56 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr5:141,404,702 INFO 2026-06-03 20:16:58 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr5:147,405,635 INFO 2026-06-03 20:16:59 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr5:150,121,247 INFO 2026-06-03 20:17:00 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr5:150,135,654 INFO 2026-06-03 20:17:01 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr5:150,406,285 INFO 2026-06-03 20:17:02 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr5:151,663,484 INFO 2026-06-03 20:17:03 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr5:157,787,932 INFO 2026-06-03 20:17:04 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr5:171,400,196 INFO 2026-06-03 20:17:05 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr5:176,348,250 INFO 2026-06-03 20:17:06 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr5:178,119,614 INFO 2026-06-03 20:17:08 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr5:179,769,053 INFO 2026-06-03 20:17:09 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr5:180,571,305 INFO 2026-06-03 20:17:10 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr6:7,182,014 INFO 2026-06-03 20:17:11 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr6:10,749,268 INFO 2026-06-03 20:17:12 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr6:25,600,377 INFO 2026-06-03 20:17:13 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr6:27,807,759 INFO 2026-06-03 20:17:14 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr6:30,552,644 INFO 2026-06-03 20:17:15 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr6:31,530,824 INFO 2026-06-03 20:17:16 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr6:31,792,415 INFO 2026-06-03 20:17:17 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr6:31,829,055 INFO 2026-06-03 20:17:18 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr6:32,049,368 INFO 2026-06-03 20:17:19 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr6:32,115,843 INFO 2026-06-03 20:17:20 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr6:33,085,130 INFO 2026-06-03 20:17:21 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr6:33,443,417 INFO 2026-06-03 20:17:23 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr6:36,972,774 INFO 2026-06-03 20:17:24 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr6:43,058,138 INFO 2026-06-03 20:17:25 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr6:44,253,508 INFO 2026-06-03 20:17:26 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr6:56,628,072 INFO 2026-06-03 20:17:27 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr6:75,134,842 INFO 2026-06-03 20:17:28 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr6:82,231,821 INFO 2026-06-03 20:17:29 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr6:100,805,862 INFO 2026-06-03 20:17:30 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr6:112,139,813 INFO 2026-06-03 20:17:31 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr6:121,447,578 INFO 2026-06-03 20:17:32 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr6:135,181,433 INFO 2026-06-03 20:17:34 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr6:139,373,900 INFO 2026-06-03 20:17:35 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr6:151,351,938 INFO 2026-06-03 20:17:36 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr6:152,094,389 INFO 2026-06-03 20:17:37 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr6:158,766,907 INFO 2026-06-03 20:17:38 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr6:159,256,564 INFO 2026-06-03 20:17:39 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr6:169,225,247 INFO 2026-06-03 20:17:40 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr7:1,437,566 INFO 2026-06-03 20:17:41 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr7:5,307,896 INFO 2026-06-03 20:17:42 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr7:5,527,782 INFO 2026-06-03 20:17:43 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr7:6,402,003 INFO 2026-06-03 20:17:45 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr7:23,254,287 INFO 2026-06-03 20:17:46 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr7:32,974,680 INFO 2026-06-03 20:17:47 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr7:43,647,586 INFO 2026-06-03 20:17:48 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr7:44,113,597 INFO 2026-06-03 20:17:49 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr7:51,316,585 INFO 2026-06-03 20:17:50 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr7:70,789,956 INFO 2026-06-03 20:17:51 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr7:73,831,517 INFO 2026-06-03 20:17:52 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr7:74,736,576 INFO 2026-06-03 20:17:53 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr7:75,882,067 INFO 2026-06-03 20:17:54 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr7:76,441,875 INFO 2026-06-03 20:17:55 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr7:91,941,032 INFO 2026-06-03 20:17:57 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr7:94,400,272 INFO 2026-06-03 20:17:58 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr7:94,408,782 INFO 2026-06-03 20:17:59 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr7:94,413,928 INFO 2026-06-03 20:18:00 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr7:94,422,976 INFO 2026-06-03 20:18:01 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr7:94,428,310 INFO 2026-06-03 20:18:02 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr7:99,450,337 INFO 2026-06-03 20:18:03 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr7:100,433,338 INFO 2026-06-03 20:18:04 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr7:101,234,363 INFO 2026-06-03 20:18:05 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr7:102,682,078 INFO 2026-06-03 20:18:07 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr7:108,346,673 INFO 2026-06-03 20:18:08 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr7:128,074,614 INFO 2026-06-03 20:18:09 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr7:134,867,708 INFO 2026-06-03 20:18:10 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr7:139,573,028 INFO 2026-06-03 20:18:11 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr7:144,268,791 INFO 2026-06-03 20:18:12 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr7:151,062,019 INFO 2026-06-03 20:18:13 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr7:155,803,465 INFO 2026-06-03 20:18:14 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr8:13,100,070 INFO 2026-06-03 20:18:15 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr8:22,614,090 INFO 2026-06-03 20:18:16 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr8:29,072,222 INFO 2026-06-03 20:18:18 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr8:37,697,488 INFO 2026-06-03 20:18:19 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr8:37,862,878 INFO 2026-06-03 20:18:20 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr8:38,414,216 INFO 2026-06-03 20:18:21 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr8:38,827,179 INFO 2026-06-03 20:18:22 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr8:43,159,007 INFO 2026-06-03 20:18:23 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr8:54,010,459 INFO 2026-06-03 20:18:24 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr8:66,634,590 INFO 2026-06-03 20:18:25 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr8:70,159,505 INFO 2026-06-03 20:18:26 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr8:85,215,025 INFO 2026-06-03 20:18:27 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr8:94,832,008 INFO 2026-06-03 20:18:28 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr8:100,151,403 INFO 2026-06-03 20:18:30 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr8:102,304,153 INFO 2026-06-03 20:18:31 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr8:113,436,746 INFO 2026-06-03 20:18:32 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr8:119,416,808 INFO 2026-06-03 20:18:33 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr8:124,549,784 INFO 2026-06-03 20:18:34 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr8:140,451,148 INFO 2026-06-03 20:18:35 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr8:143,574,842 INFO 2026-06-03 20:18:36 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr8:143,808,724 INFO 2026-06-03 20:18:37 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,331 INFO 2026-06-03 20:18:38 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,190 INFO 2026-06-03 20:18:39 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 0s. Last read position: chr8:143,866,327 INFO 2026-06-03 20:18:40 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr8:143,921,367 INFO 2026-06-03 20:18:41 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr8:143,984,927 INFO 2026-06-03 20:18:42 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr8:144,321,398 INFO 2026-06-03 20:18:44 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr8:144,506,710 INFO 2026-06-03 20:18:45 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr9:2,047,276 INFO 2026-06-03 20:18:46 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr9:16,435,690 INFO 2026-06-03 20:18:47 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr9:33,933,547 INFO 2026-06-03 20:18:48 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr9:35,720,040 INFO 2026-06-03 20:18:49 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr9:69,517,144 INFO 2026-06-03 20:18:50 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr9:87,727,638 INFO 2026-06-03 20:18:51 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr9:93,110,623 INFO 2026-06-03 20:18:52 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr9:98,989,227 INFO 2026-06-03 20:18:53 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr9:110,408,436 INFO 2026-06-03 20:18:54 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr9:115,021,104 INFO 2026-06-03 20:18:56 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr9:121,118,453 INFO 2026-06-03 20:18:57 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr9:124,326,382 INFO 2026-06-03 20:18:58 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr9:127,509,048 INFO 2026-06-03 20:18:59 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr9:128,326,333 INFO 2026-06-03 20:19:00 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr9:128,970,791 INFO 2026-06-03 20:19:01 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr9:130,835,386 INFO 2026-06-03 20:19:02 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr9:132,327,725 INFO 2026-06-03 20:19:03 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr9:134,417,189 INFO 2026-06-03 20:19:04 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr9:134,796,853 INFO 2026-06-03 20:19:06 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr9:136,338,628 INFO 2026-06-03 20:19:07 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr9:136,808,277 INFO 2026-06-03 20:19:08 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr9:137,199,572 INFO 2026-06-03 20:19:09 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr10:3,143,440 INFO 2026-06-03 20:19:10 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr10:11,165,541 INFO 2026-06-03 20:19:11 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr10:20,211,708 INFO 2026-06-03 20:19:12 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr10:29,550,697 INFO 2026-06-03 20:19:13 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr10:32,912,049 INFO 2026-06-03 20:19:14 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr10:37,177,688 INFO 2026-06-03 20:19:16 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr10:37,337,918 INFO 2026-06-03 20:19:17 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr10:46,109,625 INFO 2026-06-03 20:19:18 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr10:59,906,285 INFO 2026-06-03 20:19:19 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr10:70,404,371 INFO 2026-06-03 20:19:20 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr10:73,773,542 INFO 2026-06-03 20:19:21 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr10:77,821,205 INFO 2026-06-03 20:19:22 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr10:87,009,252 INFO 2026-06-03 20:19:23 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr10:94,593,499 INFO 2026-06-03 20:19:24 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr10:101,611,353 INFO 2026-06-03 20:19:26 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr10:109,877,805 INFO 2026-06-03 20:19:27 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr10:119,080,633 INFO 2026-06-03 20:19:28 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr10:122,415,906 INFO 2026-06-03 20:19:29 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr10:127,031,734 INFO 2026-06-03 20:19:30 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr11:431,989 INFO 2026-06-03 20:19:31 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr11:1,759,610 INFO 2026-06-03 20:19:32 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr11:6,479,243 INFO 2026-06-03 20:19:33 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr11:9,473,992 INFO 2026-06-03 20:19:34 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr11:13,707,921 INFO 2026-06-03 20:19:35 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr11:32,932,944 INFO 2026-06-03 20:19:37 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr11:44,909,716 INFO 2026-06-03 20:19:38 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr11:46,778,230 INFO 2026-06-03 20:19:39 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr11:57,327,748 INFO 2026-06-03 20:19:40 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr11:60,922,036 INFO 2026-06-03 20:19:41 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr11:62,518,045 INFO 2026-06-03 20:19:42 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr11:62,526,978 INFO 2026-06-03 20:19:43 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr11:62,567,460 INFO 2026-06-03 20:19:44 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr11:63,763,571 INFO 2026-06-03 20:19:45 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr11:64,778,245 INFO 2026-06-03 20:19:46 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr11:65,504,954 INFO 2026-06-03 20:19:47 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr11:65,646,961 INFO 2026-06-03 20:19:49 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr11:66,061,892 INFO 2026-06-03 20:19:50 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr11:66,696,387 INFO 2026-06-03 20:19:51 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr11:67,612,447 INFO 2026-06-03 20:19:52 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr11:68,939,540 INFO 2026-06-03 20:19:53 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr11:70,124,393 INFO 2026-06-03 20:19:54 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr11:72,584,238 INFO 2026-06-03 20:19:55 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr11:75,571,993 INFO 2026-06-03 20:19:56 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr11:86,808,492 INFO 2026-06-03 20:19:57 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr11:108,479,485 INFO 2026-06-03 20:19:58 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr11:118,607,654 INFO 2026-06-03 20:19:59 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr11:120,226,980 INFO 2026-06-03 20:20:01 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr11:128,462,350 INFO 2026-06-03 20:20:02 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr12:753,732 INFO 2026-06-03 20:20:03 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr12:2,797,747 INFO 2026-06-03 20:20:04 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr12:6,052,688 INFO 2026-06-03 20:20:05 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr12:6,521,012 INFO 2026-06-03 20:20:06 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr12:6,750,741 INFO 2026-06-03 20:20:07 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr12:6,936,901 INFO 2026-06-03 20:20:08 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr12:7,090,132 INFO 2026-06-03 20:20:09 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr12:9,154,599 INFO 2026-06-03 20:20:11 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr12:14,882,996 INFO 2026-06-03 20:20:12 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr12:29,400,253 INFO 2026-06-03 20:20:13 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr12:47,797,437 INFO 2026-06-03 20:20:14 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr12:49,102,159 INFO 2026-06-03 20:20:15 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr12:50,087,420 INFO 2026-06-03 20:20:16 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr12:53,039,239 INFO 2026-06-03 20:20:17 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr12:53,534,625 INFO 2026-06-03 20:20:18 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr12:55,696,984 INFO 2026-06-03 20:20:19 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr12:56,174,685 INFO 2026-06-03 20:20:20 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr12:57,092,869 INFO 2026-06-03 20:20:21 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr12:57,178,582 INFO 2026-06-03 20:20:23 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr12:57,489,026 INFO 2026-06-03 20:20:24 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr12:64,721,689 INFO 2026-06-03 20:20:25 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr12:76,849,416 INFO 2026-06-03 20:20:26 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr12:94,149,126 INFO 2026-06-03 20:20:27 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr12:104,080,758 INFO 2026-06-03 20:20:28 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr12:110,281,830 INFO 2026-06-03 20:20:29 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr12:112,970,069 INFO 2026-06-03 20:20:30 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr12:118,246,327 INFO 2026-06-03 20:20:31 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr12:121,494,485 INFO 2026-06-03 20:20:33 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr12:123,610,021 INFO 2026-06-03 20:20:34 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr12:124,912,290 INFO 2026-06-03 20:20:35 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr12:132,729,775 INFO 2026-06-03 20:20:36 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr13:20,961,588 INFO 2026-06-03 20:20:37 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr13:32,265,478 INFO 2026-06-03 20:20:38 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr13:37,579,028 INFO 2026-06-03 20:20:39 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr13:40,560,701 INFO 2026-06-03 20:20:40 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr13:49,090,342 INFO 2026-06-03 20:20:41 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr13:80,336,785 INFO 2026-06-03 20:20:42 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr13:106,567,616 INFO 2026-06-03 20:20:44 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr13:110,484,905 INFO 2026-06-03 20:20:45 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr13:113,520,722 INFO 2026-06-03 20:20:46 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr14:21,369,281 INFO 2026-06-03 20:20:47 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr14:23,064,392 INFO 2026-06-03 20:20:48 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr14:24,214,338 INFO 2026-06-03 20:20:49 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr14:31,380,510 INFO 2026-06-03 20:20:50 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr14:45,118,045 INFO 2026-06-03 20:20:51 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr14:52,708,798 INFO 2026-06-03 20:20:52 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr14:63,954,797 INFO 2026-06-03 20:20:53 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr14:68,879,003 INFO 2026-06-03 20:20:54 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr14:73,569,479 INFO 2026-06-03 20:20:56 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr14:74,829,259 INFO 2026-06-03 20:20:57 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr14:88,469,525 INFO 2026-06-03 20:20:58 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr14:94,079,683 INFO 2026-06-03 20:20:59 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr14:100,141,744 INFO 2026-06-03 20:21:00 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr14:102,085,841 INFO 2026-06-03 20:21:01 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr14:104,770,396 INFO 2026-06-03 20:21:02 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr14:105,458,340 INFO 2026-06-03 20:21:03 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr15:28,658,755 INFO 2026-06-03 20:21:04 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr15:39,589,047 INFO 2026-06-03 20:21:05 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr15:41,742,538 INFO 2026-06-03 20:21:06 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr15:43,526,346 INFO 2026-06-03 20:21:08 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr15:45,368,115 INFO 2026-06-03 20:21:09 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr15:50,575,103 INFO 2026-06-03 20:21:10 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr15:58,679,161 INFO 2026-06-03 20:21:11 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr15:63,674,359 INFO 2026-06-03 20:21:12 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr15:65,198,136 INFO 2026-06-03 20:21:13 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 1s. Last read position: chr15:68,218,604 INFO 2026-06-03 20:21:14 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 1s. Last read position: chr15:71,771,097 INFO 2026-06-03 20:21:15 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr15:74,033,261 INFO 2026-06-03 20:21:16 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 1s. Last read position: chr15:75,677,867 INFO 2026-06-03 20:21:17 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr15:82,240,448 INFO 2026-06-03 20:21:19 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr15:88,516,926 INFO 2026-06-03 20:21:20 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 1s. Last read position: chr15:90,944,998 INFO 2026-06-03 20:21:21 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr15:101,177,869 INFO 2026-06-03 20:21:22 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 1s. Last read position: chr16:426,486 INFO 2026-06-03 20:21:23 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr16:687,088 INFO 2026-06-03 20:21:24 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 1s. Last read position: chr16:1,434,391 INFO 2026-06-03 20:21:25 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 1s. Last read position: chr16:1,777,088 INFO 2026-06-03 20:21:26 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 1s. Last read position: chr16:2,093,625 INFO 2026-06-03 20:21:27 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 1s. Last read position: chr16:2,277,602 INFO 2026-06-03 20:21:28 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 1s. Last read position: chr16:2,762,777 INFO 2026-06-03 20:21:29 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 1s. Last read position: chr16:2,896,494 INFO 2026-06-03 20:21:30 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 1s. Last read position: chr16:3,744,895 INFO 2026-06-03 20:21:32 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 1s. Last read position: chr16:4,795,844 INFO 2026-06-03 20:21:33 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 1s. Last read position: chr16:11,756,275 INFO 2026-06-03 20:21:34 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 1s. Last read position: chr16:14,555,696 INFO 2026-06-03 20:21:35 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 1s. Last read position: chr16:14,950,241 INFO 2026-06-03 20:21:36 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 1s. Last read position: chr16:15,756,344 INFO 2026-06-03 20:21:37 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 1s. Last read position: chr16:16,340,352 INFO 2026-06-03 20:21:38 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 1s. Last read position: chr16:18,345,910 INFO 2026-06-03 20:21:39 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 1s. Last read position: chr16:18,500,991 INFO 2026-06-03 20:21:40 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 1s. Last read position: chr16:20,737,171 INFO 2026-06-03 20:21:41 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 1s. Last read position: chr16:21,456,386 INFO 2026-06-03 20:21:42 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 1s. Last read position: chr16:21,888,617 INFO 2026-06-03 20:21:43 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 1s. Last read position: chr16:22,534,012 INFO 2026-06-03 20:21:44 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 1s. Last read position: chr16:24,930,852 INFO 2026-06-03 20:21:45 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 1s. Last read position: chr16:28,482,326 INFO 2026-06-03 20:21:47 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 1s. Last read position: chr16:28,873,218 INFO 2026-06-03 20:21:48 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 1s. Last read position: chr16:29,483,839 INFO 2026-06-03 20:21:49 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 1s. Last read position: chr16:29,813,429 INFO 2026-06-03 20:21:50 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 1s. Last read position: chr16:30,094,821 INFO 2026-06-03 20:21:51 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 1s. Last read position: chr16:30,359,635 INFO 2026-06-03 20:21:52 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 1s. Last read position: chr16:30,737,863 INFO 2026-06-03 20:21:53 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 1s. Last read position: chr16:31,183,912 INFO 2026-06-03 20:21:54 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 1s. Last read position: chr16:46,957,069 INFO 2026-06-03 20:21:55 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 1s. Last read position: chr16:55,488,651 INFO 2026-06-03 20:21:56 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 1s. Last read position: chr16:64,998,791 INFO 2026-06-03 20:21:57 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 1s. Last read position: chr16:67,685,546 INFO 2026-06-03 20:21:58 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 1s. Last read position: chr16:69,677,278 INFO 2026-06-03 20:21:59 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 1s. Last read position: chr16:72,797,345 INFO 2026-06-03 20:22:01 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 1s. Last read position: chr16:84,350,520 INFO 2026-06-03 20:22:02 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr16:88,434,206 INFO 2026-06-03 20:22:03 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 1s. Last read position: chr16:89,561,237 INFO 2026-06-03 20:22:04 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 1s. Last read position: chr17:1,364,980 INFO 2026-06-03 20:22:05 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 1s. Last read position: chr17:2,057,352 INFO 2026-06-03 20:22:06 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr17:4,550,089 INFO 2026-06-03 20:22:07 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr17:5,450,273 INFO 2026-06-03 20:22:08 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 1s. Last read position: chr17:7,417,402 INFO 2026-06-03 20:22:09 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr17:7,848,456 INFO 2026-06-03 20:22:10 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 1s. Last read position: chr17:8,888,429 INFO 2026-06-03 20:22:11 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr17:16,382,477 INFO 2026-06-03 20:22:12 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 1s. Last read position: chr17:17,848,823 INFO 2026-06-03 20:22:14 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr17:21,021,116 INFO 2026-06-03 20:22:15 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr17:28,912,558 INFO 2026-06-03 20:22:16 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr17:31,988,456 INFO 2026-06-03 20:22:17 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr17:36,381,723 INFO 2026-06-03 20:22:18 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr17:38,762,462 INFO 2026-06-03 20:22:19 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr17:39,716,554 INFO 2026-06-03 20:22:20 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr17:40,356,117 INFO 2026-06-03 20:22:21 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr17:41,813,064 INFO 2026-06-03 20:22:22 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr17:42,543,816 INFO 2026-06-03 20:22:23 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr17:44,145,203 INFO 2026-06-03 20:22:25 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr17:45,501,858 INFO 2026-06-03 20:22:26 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr17:47,591,964 INFO 2026-06-03 20:22:27 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,420 INFO 2026-06-03 20:22:28 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,821 INFO 2026-06-03 20:22:29 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,409 INFO 2026-06-03 20:22:30 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,803 INFO 2026-06-03 20:22:31 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,014 INFO 2026-06-03 20:22:32 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,093 INFO 2026-06-03 20:22:33 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,881 INFO 2026-06-03 20:22:34 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,950 INFO 2026-06-03 20:22:36 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,102 INFO 2026-06-03 20:22:37 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,569 INFO 2026-06-03 20:22:38 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,758 INFO 2026-06-03 20:22:39 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,925 INFO 2026-06-03 20:22:40 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,214 INFO 2026-06-03 20:22:41 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,426 INFO 2026-06-03 20:22:42 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,510 INFO 2026-06-03 20:22:44 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,701 INFO 2026-06-03 20:22:45 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,005 INFO 2026-06-03 20:22:46 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,041 INFO 2026-06-03 20:22:47 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,330 INFO 2026-06-03 20:22:48 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,545 INFO 2026-06-03 20:22:49 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,886 INFO 2026-06-03 20:22:51 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,419 INFO 2026-06-03 20:22:52 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,818 INFO 2026-06-03 20:22:53 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,993 INFO 2026-06-03 20:22:54 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,649 INFO 2026-06-03 20:22:55 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,682 INFO 2026-06-03 20:22:57 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,005 INFO 2026-06-03 20:22:58 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,954 INFO 2026-06-03 20:22:59 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,012 INFO 2026-06-03 20:23:00 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,138 INFO 2026-06-03 20:23:01 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,391 INFO 2026-06-03 20:23:02 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,597 INFO 2026-06-03 20:23:03 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,744 INFO 2026-06-03 20:23:05 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,051 INFO 2026-06-03 20:23:06 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,283 INFO 2026-06-03 20:23:07 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,563 INFO 2026-06-03 20:23:08 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,600 INFO 2026-06-03 20:23:09 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,954 INFO 2026-06-03 20:23:10 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,159 INFO 2026-06-03 20:23:12 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,185 INFO 2026-06-03 20:23:13 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,344 INFO 2026-06-03 20:23:14 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,517 INFO 2026-06-03 20:23:15 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,009 INFO 2026-06-03 20:23:16 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,052 INFO 2026-06-03 20:23:18 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,734 INFO 2026-06-03 20:23:19 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,767 INFO 2026-06-03 20:23:20 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr17:50,198,180 INFO 2026-06-03 20:23:21 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,226 INFO 2026-06-03 20:23:22 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,266 INFO 2026-06-03 20:23:23 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,433 INFO 2026-06-03 20:23:25 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,765 INFO 2026-06-03 20:23:26 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr17:50,201,412 INFO 2026-06-03 20:23:27 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr17:55,411,360 INFO 2026-06-03 20:23:28 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr17:59,674,803 INFO 2026-06-03 20:23:29 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr17:62,664,814 INFO 2026-06-03 20:23:30 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr17:64,213,690 INFO 2026-06-03 20:23:31 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr17:68,251,923 INFO 2026-06-03 20:23:32 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr17:74,749,047 INFO 2026-06-03 20:23:33 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr17:75,613,106 INFO 2026-06-03 20:23:34 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr17:76,387,481 INFO 2026-06-03 20:23:35 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr17:78,891,880 INFO 2026-06-03 20:23:37 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr17:80,347,953 INFO 2026-06-03 20:23:38 SinglePassSamProgram Processed 532,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr17:81,684,030 INFO 2026-06-03 20:23:39 SinglePassSamProgram Processed 533,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr17:82,080,148 INFO 2026-06-03 20:23:40 SinglePassSamProgram Processed 534,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr17:82,735,724 INFO 2026-06-03 20:23:41 SinglePassSamProgram Processed 535,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr18:9,208,789 INFO 2026-06-03 20:23:42 SinglePassSamProgram Processed 536,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr18:23,257,241 INFO 2026-06-03 20:23:43 SinglePassSamProgram Processed 537,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr18:36,030,816 INFO 2026-06-03 20:23:44 SinglePassSamProgram Processed 538,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr18:47,028,242 INFO 2026-06-03 20:23:45 SinglePassSamProgram Processed 539,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr18:58,316,006 INFO 2026-06-03 20:23:46 SinglePassSamProgram Processed 540,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr18:75,208,914 INFO 2026-06-03 20:23:47 SinglePassSamProgram Processed 541,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr19:746,754 INFO 2026-06-03 20:23:49 SinglePassSamProgram Processed 542,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr19:1,149,399 INFO 2026-06-03 20:23:50 SinglePassSamProgram Processed 543,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr19:1,816,067 INFO 2026-06-03 20:23:51 SinglePassSamProgram Processed 544,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr19:2,477,080 INFO 2026-06-03 20:23:52 SinglePassSamProgram Processed 545,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr19:4,037,412 INFO 2026-06-03 20:23:53 SinglePassSamProgram Processed 546,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr19:5,047,648 INFO 2026-06-03 20:23:54 SinglePassSamProgram Processed 547,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr19:5,921,221 INFO 2026-06-03 20:23:55 SinglePassSamProgram Processed 548,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr19:7,637,152 INFO 2026-06-03 20:23:56 SinglePassSamProgram Processed 549,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr19:9,157,372 INFO 2026-06-03 20:23:57 SinglePassSamProgram Processed 550,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr19:10,114,629 INFO 2026-06-03 20:23:58 SinglePassSamProgram Processed 551,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr19:10,921,407 INFO 2026-06-03 20:24:00 SinglePassSamProgram Processed 552,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr19:11,666,172 INFO 2026-06-03 20:24:01 SinglePassSamProgram Processed 553,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr19:13,025,090 INFO 2026-06-03 20:24:02 SinglePassSamProgram Processed 554,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr19:14,469,340 INFO 2026-06-03 20:24:03 SinglePassSamProgram Processed 555,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr19:15,187,128 INFO 2026-06-03 20:24:04 SinglePassSamProgram Processed 556,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr19:15,564,092 INFO 2026-06-03 20:24:05 SinglePassSamProgram Processed 557,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr19:17,338,195 INFO 2026-06-03 20:24:06 SinglePassSamProgram Processed 558,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr19:18,537,601 INFO 2026-06-03 20:24:07 SinglePassSamProgram Processed 559,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr19:19,320,913 INFO 2026-06-03 20:24:08 SinglePassSamProgram Processed 560,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr19:33,207,142 INFO 2026-06-03 20:24:09 SinglePassSamProgram Processed 561,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr19:35,720,296 INFO 2026-06-03 20:24:10 SinglePassSamProgram Processed 562,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr19:38,164,815 INFO 2026-06-03 20:24:11 SinglePassSamProgram Processed 563,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr19:39,383,735 INFO 2026-06-03 20:24:13 SinglePassSamProgram Processed 564,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr19:40,370,164 INFO 2026-06-03 20:24:14 SinglePassSamProgram Processed 565,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr19:41,506,166 INFO 2026-06-03 20:24:15 SinglePassSamProgram Processed 566,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr19:42,293,182 INFO 2026-06-03 20:24:16 SinglePassSamProgram Processed 567,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr19:44,846,501 INFO 2026-06-03 20:24:17 SinglePassSamProgram Processed 568,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr19:45,768,496 INFO 2026-06-03 20:24:18 SinglePassSamProgram Processed 569,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr19:47,270,507 INFO 2026-06-03 20:24:19 SinglePassSamProgram Processed 570,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr19:48,629,542 INFO 2026-06-03 20:24:20 SinglePassSamProgram Processed 571,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr19:49,490,547 INFO 2026-06-03 20:24:21 SinglePassSamProgram Processed 572,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr19:49,782,568 INFO 2026-06-03 20:24:22 SinglePassSamProgram Processed 573,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr19:52,066,486 INFO 2026-06-03 20:24:23 SinglePassSamProgram Processed 574,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr19:54,252,878 INFO 2026-06-03 20:24:25 SinglePassSamProgram Processed 575,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr19:55,499,957 INFO 2026-06-03 20:24:26 SinglePassSamProgram Processed 576,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr19:57,779,618 INFO 2026-06-03 20:24:27 SinglePassSamProgram Processed 577,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr19:58,456,331 INFO 2026-06-03 20:24:28 SinglePassSamProgram Processed 578,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr20:2,794,595 INFO 2026-06-03 20:24:29 SinglePassSamProgram Processed 579,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr20:5,586,200 INFO 2026-06-03 20:24:30 SinglePassSamProgram Processed 580,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr20:20,524,483 INFO 2026-06-03 20:24:31 SinglePassSamProgram Processed 581,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr20:32,433,567 INFO 2026-06-03 20:24:32 SinglePassSamProgram Processed 582,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr20:35,548,510 INFO 2026-06-03 20:24:33 SinglePassSamProgram Processed 583,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr20:37,402,835 INFO 2026-06-03 20:24:34 SinglePassSamProgram Processed 584,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr20:44,715,334 INFO 2026-06-03 20:24:35 SinglePassSamProgram Processed 585,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr20:45,960,456 INFO 2026-06-03 20:24:36 SinglePassSamProgram Processed 586,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr20:48,679,360 INFO 2026-06-03 20:24:38 SinglePassSamProgram Processed 587,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr20:53,256,383 INFO 2026-06-03 20:24:39 SinglePassSamProgram Processed 588,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr20:59,030,304 INFO 2026-06-03 20:24:40 SinglePassSamProgram Processed 589,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr20:62,910,919 INFO 2026-06-03 20:24:41 SinglePassSamProgram Processed 590,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr20:64,016,736 INFO 2026-06-03 20:24:42 SinglePassSamProgram Processed 591,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr21:8,214,753 INFO 2026-06-03 20:24:43 SinglePassSamProgram Processed 592,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,913 INFO 2026-06-03 20:24:44 SinglePassSamProgram Processed 593,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 0s. Last read position: chr21:8,397,772 INFO 2026-06-03 20:24:45 SinglePassSamProgram Processed 594,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr21:8,441,949 INFO 2026-06-03 20:24:46 SinglePassSamProgram Processed 595,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,563 INFO 2026-06-03 20:24:47 SinglePassSamProgram Processed 596,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr21:29,065,046 INFO 2026-06-03 20:24:48 SinglePassSamProgram Processed 597,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr21:34,670,666 INFO 2026-06-03 20:24:49 SinglePassSamProgram Processed 598,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr21:41,168,144 INFO 2026-06-03 20:24:50 SinglePassSamProgram Processed 599,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr21:44,438,991 INFO 2026-06-03 20:24:51 SinglePassSamProgram Processed 600,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr21:45,510,096 INFO 2026-06-03 20:24:53 SinglePassSamProgram Processed 601,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr21:45,990,410 INFO 2026-06-03 20:24:54 SinglePassSamProgram Processed 602,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr21:45,997,433 INFO 2026-06-03 20:24:55 SinglePassSamProgram Processed 603,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr21:46,003,480 INFO 2026-06-03 20:24:56 SinglePassSamProgram Processed 604,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr21:46,116,028 INFO 2026-06-03 20:24:57 SinglePassSamProgram Processed 605,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr21:46,125,293 INFO 2026-06-03 20:24:58 SinglePassSamProgram Processed 606,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr21:46,658,756 INFO 2026-06-03 20:24:59 SinglePassSamProgram Processed 607,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr22:20,149,218 INFO 2026-06-03 20:25:00 SinglePassSamProgram Processed 608,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr22:21,958,540 INFO 2026-06-03 20:25:01 SinglePassSamProgram Processed 609,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr22:23,825,347 INFO 2026-06-03 20:25:02 SinglePassSamProgram Processed 610,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr22:28,795,540 INFO 2026-06-03 20:25:04 SinglePassSamProgram Processed 611,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr22:29,555,908 INFO 2026-06-03 20:25:05 SinglePassSamProgram Processed 612,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr22:33,274,538 INFO 2026-06-03 20:25:06 SinglePassSamProgram Processed 613,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr22:37,126,841 INFO 2026-06-03 20:25:07 SinglePassSamProgram Processed 614,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr22:38,736,333 INFO 2026-06-03 20:25:08 SinglePassSamProgram Processed 615,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr22:41,178,161 INFO 2026-06-03 20:25:09 SinglePassSamProgram Processed 616,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr22:42,887,918 INFO 2026-06-03 20:25:10 SinglePassSamProgram Processed 617,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr22:46,268,005 INFO 2026-06-03 20:25:11 SinglePassSamProgram Processed 618,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr22:46,464,184 INFO 2026-06-03 20:25:12 SinglePassSamProgram Processed 619,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr22:49,913,497 INFO 2026-06-03 20:25:13 SinglePassSamProgram Processed 620,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr22:50,456,502 INFO 2026-06-03 20:25:14 SinglePassSamProgram Processed 621,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chrX:1,389,480 INFO 2026-06-03 20:25:16 SinglePassSamProgram Processed 622,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chrX:3,320,305 INFO 2026-06-03 20:25:17 SinglePassSamProgram Processed 623,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chrX:10,128,586 INFO 2026-06-03 20:25:18 SinglePassSamProgram Processed 624,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chrX:24,210,778 INFO 2026-06-03 20:25:19 SinglePassSamProgram Processed 625,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chrX:46,472,748 INFO 2026-06-03 20:25:20 SinglePassSamProgram Processed 626,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chrX:49,034,134 INFO 2026-06-03 20:25:21 SinglePassSamProgram Processed 627,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chrX:53,589,775 INFO 2026-06-03 20:25:22 SinglePassSamProgram Processed 628,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chrX:67,545,182 INFO 2026-06-03 20:25:23 SinglePassSamProgram Processed 629,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chrX:72,273,273 INFO 2026-06-03 20:25:24 SinglePassSamProgram Processed 630,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chrX:101,109,573 INFO 2026-06-03 20:25:25 SinglePassSamProgram Processed 631,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chrX:119,618,646 INFO 2026-06-03 20:25:26 SinglePassSamProgram Processed 632,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chrX:136,878,989 INFO 2026-06-03 20:25:27 SinglePassSamProgram Processed 633,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chrX:153,950,333 INFO 2026-06-03 20:25:29 SinglePassSamProgram Processed 634,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chrX:154,399,346 INFO 2026-06-03 20:25:30 SinglePassSamProgram Processed 635,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: GL000220.1:107,740 INFO 2026-06-03 20:25:31 SinglePassSamProgram Processed 636,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 0s. Last read position: GL000220.1:115,559 INFO 2026-06-03 20:25:32 SinglePassSamProgram Processed 637,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 0s. Last read position: GL000220.1:158,140 INFO 2026-06-03 20:25:33 SinglePassSamProgram Processed 638,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: KI270714.1:29,883 INFO 2026-06-03 20:25:34 SinglePassSamProgram Processed 639,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: KI270733.1:132,405 INFO 2026-06-03 20:25:35 SinglePassSamProgram Processed 640,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: KI270733.1:176,099 INFO 2026-06-03 20:25:36 RExecutor Executing R script via command: Rscript /tmp/script13085230722200655585.R /tmp/nxf.XXXXNyTAKt/aih-tih-sc-3377ac-R1_A23YTGFLT4_1_collectinsertsize.txt /tmp/nxf.XXXXNyTAKt/aih-tih-sc-3377ac-R1_A23YTGFLT4_1_collectinsertsize.pdf aih-tih-sc-3377ac-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam ERROR 2026-06-03 20:25:36 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:25:36 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:25:36 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) ERROR 2026-06-03 20:25:36 ProcessExecutor During startup - Warning messages: ERROR 2026-06-03 20:25:36 ProcessExecutor 1: Setting LC_CTYPE failed, using "C" ERROR 2026-06-03 20:25:36 ProcessExecutor 2: Setting LC_COLLATE failed, using "C" ERROR 2026-06-03 20:25:36 ProcessExecutor 3: Setting LC_TIME failed, using "C" ERROR 2026-06-03 20:25:36 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C" ERROR 2026-06-03 20:25:36 ProcessExecutor 5: Setting LC_MONETARY failed, using "C" ERROR 2026-06-03 20:25:36 ProcessExecutor 6: Setting LC_PAPER failed, using "C" ERROR 2026-06-03 20:25:36 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C" INFO 2026-06-03 20:25:36 ProcessExecutor null device INFO 2026-06-03 20:25:36 ProcessExecutor 1 ERROR 2026-06-03 20:25:36 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) [Wed Jun 03 20:25:36 GMT 2026] picard.analysis.CollectInsertSizeMetrics done. Elapsed time: 11.76 minutes. Runtime.totalMemory()=423624704