#!/bin/bash -euo pipefail
picard \
-Xmx3276M \
CollectInsertSizeMetrics \
\
--INPUT aih-tih-sc-3377ac-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam \
--OUTPUT aih-tih-sc-3377ac-R1_A23YTGFLT4_1_collectinsertsize.txt \
--Histogram_FILE aih-tih-sc-3377ac-R1_A23YTGFLT4_1_collectinsertsize.pdf
cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:PICARD_COLLECTINSERTSIZEMETRICS":
picard: $(picard CollectInsertSizeMetrics --version 2>&1 | grep -o 'Version:.*' | cut -f2- -d:)
END_VERSIONS