File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/1318a03d07528052c7feadcc25c1fc/.command.log
Size
1.7 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-3282fd-R1_A23YTGFLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/0a7fa37b7121542e9229a7eafff754/aih-tih-sc-3282fd-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e543dae6-5fea-4720-bfb6-150bf1ff20d4/82/1bfcba5045fc10a52ca200a4890a9a/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/1318a03d07528052c7feadcc25c1fc/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/1318a03d07528052c7feadcc25c1fc/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/bbae0cc2fedf29ac604b7365ce550e/aih-tih-sc-3282fd-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
NOS1AP--CD244
starfusion
arriba
MTPAP--ANKRD26
starfusion
arriba
TVP23C--CDRT4
arriba

  0%|          | 0/3 [00:00<?, ?it/s]
Processing NOS1AP--CD244:   0%|          | 0/3 [00:00<?, ?it/s]
Processing NOS1AP--CD244:  33%|███▎      | 1/3 [00:00<00:00,  9.05it/s]
Processing MTPAP--ANKRD26:  33%|███▎      | 1/3 [00:00<00:00,  9.05it/s]
Processing MTPAP--ANKRD26:  67%|██████▋   | 2/3 [00:00<00:00,  9.34it/s]
Processing TVP23C--CDRT4:  67%|██████▋   | 2/3 [00:00<00:00,  9.34it/s] 
Processing TVP23C--CDRT4: 100%|██████████| 3/3 [00:00<00:00,  9.44it/s]
Processing TVP23C--CDRT4: 100%|██████████| 3/3 [00:00<00:00,  9.38it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory