File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/daf435c5dead93d62572ded924f56a/.command.log
Size
726 bytes
Task
NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (aih-tih-sc-28eb14-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/0f02a4e67a118e9750227f0537e14d/aih-tih-sc-28eb14-R1_A23YTGFLT4_1.features.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/daf435c5dead93d62572ded924f56a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/daf435c5dead93d62572ded924f56a/.command.run
==> STAGING COMPLETE (3 inputs)

Predicting contamination for 1 sample(s)...
Detection threshold: VAF_p90 < 0.9999
Level estimation: contamination_pct = -215.87 * vaf_p90 + 215.65

  aih-tih-sc-28eb14-R1_A23YTGFLT4_1: vaf_p90=1.000000 -> CLEAN

Output saved to: aih-tih-sc-28eb14-R1_A23YTGFLT4_1.predictions.csv
Summary: 0/1 samples flagged as contaminated