File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/6a35dba8fd379a114c1094ffc9ae07/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 03 20:56:20
                             Started mapping on |	Jun 03 21:03:04
                                    Finished on |	Jun 03 21:46:04
       Mapping speed, Million of reads per hour |	355.54

                          Number of input reads |	254805325
                      Average input read length |	219
                                    UNIQUE READS:
                   Uniquely mapped reads number |	241252292
                        Uniquely mapped reads % |	94.68%
                          Average mapped length |	218.46
                       Number of splices: Total |	212221300
            Number of splices: Annotated (sjdb) |	208552237
                       Number of splices: GT/AG |	209298058
                       Number of splices: GC/AG |	1460871
                       Number of splices: AT/AC |	174147
               Number of splices: Non-canonical |	1288224
                      Mismatch rate per base, % |	0.32%
                         Deletion rate per base |	0.04%
                        Deletion average length |	2.17
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.72
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	10785412
             % of reads mapped to multiple loci |	4.23%
        Number of reads mapped to too many loci |	617160
             % of reads mapped to too many loci |	0.24%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1688124
                 % of reads unmapped: too short |	0.66%
                Number of reads unmapped: other |	462337
                     % of reads unmapped: other |	0.18%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%