File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/02062d8bc7626e40e1b009cb96ea9f/.command.log
Size
2.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-49909d-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/eaf0d224f0a52f66042885fb91af20/aih-tih-sc-49909d-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e543dae6-5fea-4720-bfb6-150bf1ff20d4/82/1bfcba5045fc10a52ca200a4890a9a/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/02062d8bc7626e40e1b009cb96ea9f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/02062d8bc7626e40e1b009cb96ea9f/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/15f0daabda049580e2e196e839e425/aih-tih-sc-49909d-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
TLK2--AL669831.1
starfusion
STX16--NPEPL1
starfusion
arriba
ANKLE2--GOLGA3
starfusion
TVP23C--CDRT4
arriba
KLRC4--KLRK1
arriba
AC004921.2--FKBP15
arriba
PTPN12--FKBP15
arriba

  0%|          | 0/7 [00:00<?, ?it/s]
Processing TLK2--AL669831.1:   0%|          | 0/7 [00:00<?, ?it/s]
Processing TLK2--AL669831.1:  14%|█▍        | 1/7 [00:00<00:00,  9.07it/s]
Processing STX16--NPEPL1:  14%|█▍        | 1/7 [00:00<00:00,  9.07it/s]   
Processing STX16--NPEPL1:  29%|██▊       | 2/7 [00:00<00:00,  9.34it/s]
Processing ANKLE2--GOLGA3:  29%|██▊       | 2/7 [00:00<00:00,  9.34it/s]
Processing ANKLE2--GOLGA3:  43%|████▎     | 3/7 [00:00<00:00,  9.33it/s]
Processing TVP23C--CDRT4:  43%|████▎     | 3/7 [00:00<00:00,  9.33it/s] 
Processing TVP23C--CDRT4:  57%|█████▋    | 4/7 [00:00<00:00,  9.40it/s]
Processing KLRC4--KLRK1:  57%|█████▋    | 4/7 [00:00<00:00,  9.40it/s] 
Processing KLRC4--KLRK1:  71%|███████▏  | 5/7 [00:00<00:00,  9.46it/s]
Processing AC004921.2--FKBP15:  71%|███████▏  | 5/7 [00:00<00:00,  9.46it/s]
Processing AC004921.2--FKBP15:  86%|████████▌ | 6/7 [00:00<00:00,  9.48it/s]
Processing PTPN12--FKBP15:  86%|████████▌ | 6/7 [00:00<00:00,  9.48it/s]    
Processing PTPN12--FKBP15: 100%|██████████| 7/7 [00:00<00:00,  9.49it/s]
Processing PTPN12--FKBP15: 100%|██████████| 7/7 [00:00<00:00,  9.42it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory