File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/5d1941924ca6357844f8ff078144b5/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 03 23:27:23
                             Started mapping on |	Jun 03 23:33:51
                                    Finished on |	Jun 04 01:46:29
       Mapping speed, Million of reads per hour |	131.46

                          Number of input reads |	290592443
                      Average input read length |	218
                                    UNIQUE READS:
                   Uniquely mapped reads number |	276748558
                        Uniquely mapped reads % |	95.24%
                          Average mapped length |	217.87
                       Number of splices: Total |	221459772
            Number of splices: Annotated (sjdb) |	217230999
                       Number of splices: GT/AG |	218442888
                       Number of splices: GC/AG |	1555635
                       Number of splices: AT/AC |	142909
               Number of splices: Non-canonical |	1318340
                      Mismatch rate per base, % |	0.39%
                         Deletion rate per base |	0.03%
                        Deletion average length |	2.12
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.58
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	10220290
             % of reads mapped to multiple loci |	3.52%
        Number of reads mapped to too many loci |	650678
             % of reads mapped to too many loci |	0.22%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2115185
                 % of reads unmapped: too short |	0.73%
                Number of reads unmapped: other |	857732
                     % of reads unmapped: other |	0.30%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%